mRNA_P-wetherbeei_contig58972.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig58972.1.1
Unique NamemRNA_P-wetherbeei_contig58972.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig58972.1.1 vs. uniprot
Match: UPI0018C51249 (ABC transporter permease n=1 Tax=Aestuariivirga litoralis TaxID=2650924 RepID=UPI0018C51249)

HSP 1 Score: 232 bits (591), Expect = 3.730e-74
Identity = 117/143 (81.82%), Postives = 130/143 (90.91%), Query Frame = 1
Query:    4 INLIIILALLDATRVFRLSRAVALNSAVMDYVESARLRGEGMGWIVFREIVPNILPPLITEFGLRFCFVFLTISALSFLGVGIQPPTADWGSMVAESKSLISFGRPA------PLYPAAAIALLTVAVNFVVDWFLHKTSGLR 414
            +NL+IILALLD+TRVFRL+RAVALNSAVMDYVESARLRGE   WIVFREI+PNILPPLITEFGLRFCFVFLTI+ALSFLGVG+QPPTADWGSMVAE+K+LI++   A      P YPA+AIALLTVAVNFVVDWFLHKTSGL+
Sbjct:  157 VNLVIILALLDSTRVFRLARAVALNSAVMDYVESARLRGERTPWIVFREILPNILPPLITEFGLRFCFVFLTIAALSFLGVGVQPPTADWGSMVAENKTLINYPAQAFPYIRVPFYPASAIALLTVAVNFVVDWFLHKTSGLK 299          
BLAST of mRNA_P-wetherbeei_contig58972.1.1 vs. uniprot
Match: A0A7Y2BQS6_9HYPH (ABC transporter permease n=1 Tax=Hyphomicrobiales bacterium TaxID=1909294 RepID=A0A7Y2BQS6_9HYPH)

HSP 1 Score: 232 bits (591), Expect = 5.370e-74
Identity = 111/139 (79.86%), Postives = 127/139 (91.37%), Query Frame = 1
Query:    7 NLIIILALLDATRVFRLSRAVALNSAVMDYVESARLRGEGMGWIVFREIVPNILPPLITEFGLRFCFVFLTISALSFLGVGIQPPTADWGSMVAESKSLISFGRPAPLYPAAAIALLTVAVNFVVDWFLHKTSGLRDGH 423
            NLIII+A+LDATRVFRLSRAVA+N  VMDYVE+A+LRGEG+ WI+ +EI+PNI+PPL+ EFGLRFCFVFLTISALSFLGVGIQPPTADWGSMV E+ +LI++G   PL+PA AIALLTVAVNFVVDWFLHKTSGLRD H
Sbjct:  173 NLIIIIAVLDATRVFRLSRAVAMNVVVMDYVEAAKLRGEGLMWIMRKEIIPNIMPPLVAEFGLRFCFVFLTISALSFLGVGIQPPTADWGSMVRENATLITYGSATPLFPAGAIALLTVAVNFVVDWFLHKTSGLRDEH 311          
BLAST of mRNA_P-wetherbeei_contig58972.1.1 vs. uniprot
Match: A0A2W2C966_9HYPH (ABC transporter permease n=1 Tax=Aestuariivirga litoralis TaxID=2650924 RepID=A0A2W2C966_9HYPH)

HSP 1 Score: 231 bits (590), Expect = 5.450e-74
Identity = 115/144 (79.86%), Postives = 129/144 (89.58%), Query Frame = 1
Query:    4 INLIIILALLDATRVFRLSRAVALNSAVMDYVESARLRGEGMGWIVFREIVPNILPPLITEFGLRFCFVFLTISALSFLGVGIQPPTADWGSMVAESKSLISFGR------PAPLYPAAAIALLTVAVNFVVDWFLHKTSGLRD 417
            INL++ILALLD+TRVFRL+RA ALN  VMDYVE+A+LRGE MGWI+F+E++PNILP LITEFGLRFCFVFLTI+ALSFLGVGIQPPTADWGSMVAESK+LI+F        PAP YPA AIALLTVA+NFVVDWFLHKTSGLRD
Sbjct:  155 INLVLILALLDSTRVFRLARATALNVVVMDYVEAAKLRGEKMGWIIFKEVLPNILPVLITEFGLRFCFVFLTIAALSFLGVGIQPPTADWGSMVAESKTLITFPVRTFPWIPAPFYPAMAIALLTVAINFVVDWFLHKTSGLRD 298          
BLAST of mRNA_P-wetherbeei_contig58972.1.1 vs. uniprot
Match: A0A847ZX65_9HYPH (ABC transporter permease n=1 Tax=Phyllobacteriaceae bacterium TaxID=1871068 RepID=A0A847ZX65_9HYPH)

HSP 1 Score: 231 bits (589), Expect = 6.420e-74
Identity = 117/137 (85.40%), Postives = 125/137 (91.24%), Query Frame = 1
Query:    7 NLIIILALLDATRVFRLSRAVALNSAVMDYVESARLRGEGMGWIVFREIVPNILPPLITEFGLRFCFVFLTISALSFLGVGIQPPTADWGSMVAESKSLISFGRPAPLYPAAAIALLTVAVNFVVDWFLHKTSGLRD 417
            NLI ILALLD+TRVFRL+R  AL+ AV D+VE+ARLRGEGM W+VFREIVPNILP LI EFGLRF FVFLTISALSFLGVGIQPPTADWGSMVAESK+LI+FGRP PL PAAAIALLTVAVNFVVDWFL KTSGLRD
Sbjct:  156 NLIFILALLDSTRVFRLARNTALSVAVQDFVEAARLRGEGMLWVVFREIVPNILPTLIAEFGLRFSFVFLTISALSFLGVGIQPPTADWGSMVAESKTLITFGRPQPLIPAAAIALLTVAVNFVVDWFLQKTSGLRD 292          
BLAST of mRNA_P-wetherbeei_contig58972.1.1 vs. uniprot
Match: A0A6L7N353_9GAMM (ABC transporter permease n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A6L7N353_9GAMM)

HSP 1 Score: 226 bits (577), Expect = 3.520e-72
Identity = 104/140 (74.29%), Postives = 126/140 (90.00%), Query Frame = 1
Query:    4 INLIIILALLDATRVFRLSRAVALNSAVMDYVESARLRGEGMGWIVFREIVPNILPPLITEFGLRFCFVFLTISALSFLGVGIQPPTADWGSMVAESKSLISFGRPAPLYPAAAIALLTVAVNFVVDWFLHKTSGLRDGH 423
            +NLIII+ +LD+TRVFR++RAV+LN  VMD++ESARLRGEG+GWI  REI+PNI+PPL+ EFGLRFCFVFLTISALSFLG+GIQPPTADWGSMV ++ +LI++G   PL PAAAIA+LT+ VNFVVDWFLHKTSGL+D H
Sbjct:  149 VNLIIIIGVLDSTRVFRIARAVSLNVVVMDFIESARLRGEGLGWITLREILPNIMPPLVAEFGLRFCFVFLTISALSFLGLGIQPPTADWGSMVRDTSTLITYGELVPLLPAAAIAILTIGVNFVVDWFLHKTSGLKDEH 288          
BLAST of mRNA_P-wetherbeei_contig58972.1.1 vs. uniprot
Match: A0A848YH89_9HYPH (ABC transporter permease n=1 Tax=Hyphomicrobiales bacterium TaxID=1909294 RepID=A0A848YH89_9HYPH)

HSP 1 Score: 226 bits (576), Expect = 7.420e-72
Identity = 109/139 (78.42%), Postives = 124/139 (89.21%), Query Frame = 1
Query:    7 NLIIILALLDATRVFRLSRAVALNSAVMDYVESARLRGEGMGWIVFREIVPNILPPLITEFGLRFCFVFLTISALSFLGVGIQPPTADWGSMVAESKSLISFGRPAPLYPAAAIALLTVAVNFVVDWFLHKTSGLRDGH 423
            NLIII+ALLD+TRVFRL RAV +N AVMD+VE A+LRGEG+ WI+FREI+PNILPPL+ EFGLRFCFVFL I+ALSFLGVGIQPPTADWGSMV ++ +LI++G   PL PAAAIALLTV VNFVVDWFLHKTSGLRD H
Sbjct:  163 NLIIIIALLDSTRVFRLCRAVGMNVAVMDFVEVAKLRGEGLSWIMFREILPNILPPLVVEFGLRFCFVFLLIAALSFLGVGIQPPTADWGSMVRDNATLITYGDITPLLPAAAIALLTVGVNFVVDWFLHKTSGLRDDH 301          
BLAST of mRNA_P-wetherbeei_contig58972.1.1 vs. uniprot
Match: A0A7S8HE27_9HYPH (ABC transporter permease n=1 Tax=Kaustia mangrovi TaxID=2593653 RepID=A0A7S8HE27_9HYPH)

HSP 1 Score: 223 bits (569), Expect = 3.730e-71
Identity = 107/138 (77.54%), Postives = 125/138 (90.58%), Query Frame = 1
Query:   10 LIIILALLDATRVFRLSRAVALNSAVMDYVESARLRGEGMGWIVFREIVPNILPPLITEFGLRFCFVFLTISALSFLGVGIQPPTADWGSMVAESKSLISFGRPAPLYPAAAIALLTVAVNFVVDWFLHKTSGLRDGH 423
            LII++A+LD+TRVFRL+RAV +N AVMD+VE+ARLRGEG+GWI+ REI+PNILPPL+ EFGLRFCFVFL ISALSFLG+GIQPPTADWGSMV ++ +LI++G   PL PA AIALLTVAVNFVVDWFLHKTSGLRD H
Sbjct:  137 LIIVIAVLDSTRVFRLARAVGMNVAVMDFVEAARLRGEGLGWIMGREILPNILPPLVAEFGLRFCFVFLLISALSFLGLGIQPPTADWGSMVRDNATLITYGDITPLLPAGAIALLTVAVNFVVDWFLHKTSGLRDEH 274          
BLAST of mRNA_P-wetherbeei_contig58972.1.1 vs. uniprot
Match: UPI0009A1CE72 (ABC transporter permease n=1 Tax=Pseudomonas sp. CC6-YY-74 TaxID=1930532 RepID=UPI0009A1CE72)

HSP 1 Score: 224 bits (571), Expect = 5.910e-71
Identity = 108/138 (78.26%), Postives = 125/138 (90.58%), Query Frame = 1
Query:   10 LIIILALLDATRVFRLSRAVALNSAVMDYVESARLRGEGMGWIVFREIVPNILPPLITEFGLRFCFVFLTISALSFLGVGIQPPTADWGSMVAESKSLISFGRPAPLYPAAAIALLTVAVNFVVDWFLHKTSGLRDGH 423
            LI I+A+LD+TRVFRL+RAVA N AV+D+VE+AR+RGEG+GWI+FREI+PNILPPL+ EFGLRFCFVFL ISALSFLG+GIQPPTADWGSMV ++ +LIS+G   PL PAAAIALLTV VNFVVDWFLHKTSGLRD H
Sbjct:  175 LIAIIAVLDSTRVFRLTRAVATNVAVLDFVEAARIRGEGVGWIMFREILPNILPPLVAEFGLRFCFVFLFISALSFLGLGIQPPTADWGSMVRDNATLISYGDITPLLPAAAIALLTVGVNFVVDWFLHKTSGLRDEH 312          
BLAST of mRNA_P-wetherbeei_contig58972.1.1 vs. uniprot
Match: A0A327JMJ0_9HYPH (ABC transporter permease n=1 Tax=Rhodobium orientis TaxID=34017 RepID=A0A327JMJ0_9HYPH)

HSP 1 Score: 222 bits (566), Expect = 6.250e-71
Identity = 104/138 (75.36%), Postives = 126/138 (91.30%), Query Frame = 1
Query:    4 INLIIILALLDATRVFRLSRAVALNSAVMDYVESARLRGEGMGWIVFREIVPNILPPLITEFGLRFCFVFLTISALSFLGVGIQPPTADWGSMVAESKSLISFGRPAPLYPAAAIALLTVAVNFVVDWFLHKTSGLRD 417
            +NLI+++A+LD+TRV+RLSRAVA+N  VMDYVE+A+LRGEG+GW++ REI+PNI  PLI EFGLRFCFVFLTISALSFLG+GIQPPTADWGSMV ++ +LI+FG P PL PAAAIALLTVAVNFVVDW LH++SGL+D
Sbjct:  120 VNLILVIAVLDSTRVYRLSRAVAMNVVVMDYVEAAKLRGEGLGWLIRREILPNITAPLIAEFGLRFCFVFLTISALSFLGLGIQPPTADWGSMVRDNATLITFGDPTPLMPAAAIALLTVAVNFVVDWMLHRSSGLKD 257          
BLAST of mRNA_P-wetherbeei_contig58972.1.1 vs. uniprot
Match: A0A1T4XKL3_9GAMM (Peptide/nickel transport system permease protein n=2 Tax=Thiothrix TaxID=1030 RepID=A0A1T4XKL3_9GAMM)

HSP 1 Score: 223 bits (569), Expect = 8.790e-71
Identity = 104/137 (75.91%), Postives = 124/137 (90.51%), Query Frame = 1
Query:   10 LIIILALLDATRVFRLSRAVALNSAVMDYVESARLRGEGMGWIVFREIVPNILPPLITEFGLRFCFVFLTISALSFLGVGIQPPTADWGSMVAESKSLISFGRPAPLYPAAAIALLTVAVNFVVDWFLHKTSGLRDG 420
            LIII+A+LD+TRVFRL+RAV+LN  VMDYVE+ARLRGEG+GWI  RE++PNI+PPL+ EFGLRFCFVFLTI+ALSFLG+GIQPPTADWGSMV ++ +LIS+G   PL PA AIALLT+ VNF+VDWFLHKTSGL+DG
Sbjct:  165 LIIIIAVLDSTRVFRLARAVSLNVVVMDYVEAARLRGEGLGWITLREVLPNIMPPLVAEFGLRFCFVFLTIAALSFLGLGIQPPTADWGSMVRDNATLISYGDITPLLPAGAIALLTIGVNFIVDWFLHKTSGLKDG 301          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig58972.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI0018C512493.730e-7481.82ABC transporter permease n=1 Tax=Aestuariivirga li... [more]
A0A7Y2BQS6_9HYPH5.370e-7479.86ABC transporter permease n=1 Tax=Hyphomicrobiales ... [more]
A0A2W2C966_9HYPH5.450e-7479.86ABC transporter permease n=1 Tax=Aestuariivirga li... [more]
A0A847ZX65_9HYPH6.420e-7485.40ABC transporter permease n=1 Tax=Phyllobacteriacea... [more]
A0A6L7N353_9GAMM3.520e-7274.29ABC transporter permease n=1 Tax=Gammaproteobacter... [more]
A0A848YH89_9HYPH7.420e-7278.42ABC transporter permease n=1 Tax=Hyphomicrobiales ... [more]
A0A7S8HE27_9HYPH3.730e-7177.54ABC transporter permease n=1 Tax=Kaustia mangrovi ... [more]
UPI0009A1CE725.910e-7178.26ABC transporter permease n=1 Tax=Pseudomonas sp. C... [more]
A0A327JMJ0_9HYPH6.250e-7175.36ABC transporter permease n=1 Tax=Rhodobium orienti... [more]
A0A1T4XKL3_9GAMM8.790e-7175.91Peptide/nickel transport system permease protein n... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig58972contigP-wetherbeei_contig58972:77..502 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog1547437.LL06_09300
PFAMsBPD_transp_1,OppC_N
Model size426
Max annot lvl28211|Alphaproteobacteria
KEGG koko:K02034
KEGG TC3.A.1.5
KEGG Pathwayko02024,map02024
KEGG ModuleM00239
Hectar predicted targeting categorysignal anchor
Exons1
Evalue6.55e-71
EggNOG OGsCOG1173@1|root,COG1173@2|Bacteria,1MU0P@1224|Proteobacteria,2TSX5@28211|Alphaproteobacteria,43MW9@69277|Phyllobacteriaceae
DescriptionBinding-protein-dependent transport system inner membrane component
Cds size426
COG categoryP
BRITEko00000,ko00001,ko00002,ko02000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186871.9166508-CDS-P-wetherbeei_contig58972:76..5021683186871.9166508-CDS-P-wetherbeei_contig58972:76..502Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig58972 77..502 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig58972.1.1prot_P-wetherbeei_contig58972.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig58972 77..502 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig58972.1.1

>prot_P-wetherbeei_contig58972.1.1 ID=prot_P-wetherbeei_contig58972.1.1|Name=mRNA_P-wetherbeei_contig58972.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=142bp
LINLIIILALLDATRVFRLSRAVALNSAVMDYVESARLRGEGMGWIVFRE
IVPNILPPLITEFGLRFCFVFLTISALSFLGVGIQPPTADWGSMVAESKS
LISFGRPAPLYPAAAIALLTVAVNFVVDWFLHKTSGLRDGH*
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mRNA from alignment at P-wetherbeei_contig58972:77..502-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig58972.1.1 ID=mRNA_P-wetherbeei_contig58972.1.1|Name=mRNA_P-wetherbeei_contig58972.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=426bp|location=Sequence derived from alignment at P-wetherbeei_contig58972:77..502- (Phaeothamnion wetherbeei SAG_119_79)
CTCATCAATCTTATCATCATTCTGGCCTTGCTCGACGCCACCCGCGTCTT CCGCCTGTCCCGTGCCGTGGCCCTGAATTCCGCGGTGATGGATTATGTCG AATCCGCCAGGCTGCGTGGTGAAGGCATGGGCTGGATTGTTTTCCGGGAG ATCGTGCCCAACATCCTGCCGCCGCTGATTACCGAATTTGGCCTGCGCTT CTGTTTCGTGTTCCTTACCATTTCCGCCCTCTCCTTCCTTGGTGTCGGCA TTCAGCCGCCCACCGCCGATTGGGGTTCCATGGTGGCTGAAAGCAAGTCG CTGATCAGCTTCGGCAGGCCAGCACCGCTCTATCCCGCCGCGGCCATAGC ACTTCTCACCGTTGCGGTGAATTTCGTAGTTGATTGGTTCCTCCATAAAA CAAGTGGGCTTCGCGATGGTCACTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig58972:77..502-

>mRNA_P-wetherbeei_contig58972.1.1 ID=mRNA_P-wetherbeei_contig58972.1.1|Name=mRNA_P-wetherbeei_contig58972.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=426bp|location=Sequence derived from alignment at P-wetherbeei_contig58972:77..502- (Phaeothamnion wetherbeei SAG_119_79)
CTCATCAATCTTATCATCATTCTGGCCTTGCTCGACGCCACCCGCGTCTT
CCGCCTGTCCCGTGCCGTGGCCCTGAATTCCGCGGTGATGGATTATGTCG
AATCCGCCAGGCTGCGTGGTGAAGGCATGGGCTGGATTGTTTTCCGGGAG
ATCGTGCCCAACATCCTGCCGCCGCTGATTACCGAATTTGGCCTGCGCTT
CTGTTTCGTGTTCCTTACCATTTCCGCCCTCTCCTTCCTTGGTGTCGGCA
TTCAGCCGCCCACCGCCGATTGGGGTTCCATGGTGGCTGAAAGCAAGTCG
CTGATCAGCTTCGGCAGGCCAGCACCGCTCTATCCCGCCGCGGCCATAGC
ACTTCTCACCGTTGCGGTGAATTTCGTAGTTGATTGGTTCCTCCATAAAA
CAAGTGGGCTTCGCGATGGTCACTGA
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