mRNA_P-wetherbeei_contig58946.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig58946.1.1
Unique NamemRNA_P-wetherbeei_contig58946.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig58946.1.1 vs. uniprot
Match: A0A0S8B706_9PROT (ABC transporter ATP-binding protein n=1 Tax=Betaproteobacteria bacterium SG8_39 TaxID=1703390 RepID=A0A0S8B706_9PROT)

HSP 1 Score: 263 bits (673), Expect = 9.130e-87
Identity = 132/166 (79.52%), Postives = 149/166 (89.76%), Query Frame = 1
Query:    1 KGQITYAGNEIAGWAPDRIVRTGISHVPEGREVFPLLSVEDNLKMGAYTRSDRDGVARDTETVYGYFPILKERARQDAGLLSGGQQQMLAIARALLSAPKVMLLDEPSLGLSPLLTKEIFEIIVRINRERGTTILLVEQNAQMALKTADFGYVLEVGRIVMEDTCA 498
            KGQ+   G EI G APD++VR G+ HVPEGREVFPLLSVEDNL+MGAYTR D DGVA+D E V+GYFP+L+ERA+Q+AG LSGGQQQMLAIARALL+ P++ML+DEPSLGLSP LTKEIFEIIVRINRERGTTILLVEQNA MALK AD+GYVLEVGRIVMED+CA
Sbjct:   59 KGQVKLRGVEIQGRAPDQVVRAGVVHVPEGREVFPLLSVEDNLRMGAYTRRDPDGVAQDLEAVFGYFPVLRERAQQEAGQLSGGQQQMLAIARALLAKPQLMLMDEPSLGLSPKLTKEIFEIIVRINRERGTTILLVEQNAHMALKIADWGYVLEVGRIVMEDSCA 224          
BLAST of mRNA_P-wetherbeei_contig58946.1.1 vs. uniprot
Match: A0A2S5T573_9BURK (ABC transporter ATP-binding protein n=1 Tax=Schlegelella thermodepolymerans TaxID=215580 RepID=A0A2S5T573_9BURK)

HSP 1 Score: 261 bits (666), Expect = 1.210e-85
Identity = 133/166 (80.12%), Postives = 145/166 (87.35%), Query Frame = 1
Query:    1 KGQITYAGNEIAGWAPDRIVRTGISHVPEGREVFPLLSVEDNLKMGAYTRSDRDGVARDTETVYGYFPILKERARQDAGLLSGGQQQMLAIARALLSAPKVMLLDEPSLGLSPLLTKEIFEIIVRINRERGTTILLVEQNAQMALKTADFGYVLEVGRIVMEDTCA 498
            KG+I Y G  I G  P  IVR GISHVPEGREVFPLLSV DNL MGAYTRSDRD VARD E VYGYFPILKERA+Q+AGLLSGGQQQMLAI+RAL++ P+++LLDEPSLGLSP LTKEIFEI+VRINRERGTTIL+VEQNA MAL  AD+GYVLE GRIVMEDTCA
Sbjct:   63 KGEILYDGRSIVGEDPSVIVRRGISHVPEGREVFPLLSVRDNLLMGAYTRSDRDAVARDLEMVYGYFPILKERAQQNAGLLSGGQQQMLAISRALMADPQIVLLDEPSLGLSPKLTKEIFEIVVRINRERGTTILVVEQNANMALNAADYGYVLENGRIVMEDTCA 228          
BLAST of mRNA_P-wetherbeei_contig58946.1.1 vs. uniprot
Match: A0A5C6U3R6_9BURK (ABC transporter ATP-binding protein n=2 Tax=Burkholderiales genera incertae sedis TaxID=224471 RepID=A0A5C6U3R6_9BURK)

HSP 1 Score: 259 bits (661), Expect = 5.890e-85
Identity = 129/165 (78.18%), Postives = 145/165 (87.88%), Query Frame = 1
Query:    1 KGQITYAGNEIAGWAPDRIVRTGISHVPEGREVFPLLSVEDNLKMGAYTRSDRDGVARDTETVYGYFPILKERARQDAGLLSGGQQQMLAIARALLSAPKVMLLDEPSLGLSPLLTKEIFEIIVRINRERGTTILLVEQNAQMALKTADFGYVLEVGRIVMEDTC 495
            KG +T+ G +I    P  IV+ G+SHVPEGREVFPLLSV DNL MGAYTR DRDGVARD ETVYGYFPIL+ERA+QDAGLLSGGQQQMLAI+RAL++AP+VMLLDEPSLGLSP LT+EIFEI++RINRERGTT+LLVEQNA MAL  AD GYVLE GRIVMED+C
Sbjct:   58 KGTVTFKGEDITAKDPALIVQRGLSHVPEGREVFPLLSVHDNLLMGAYTRKDRDGVARDIETVYGYFPILRERAKQDAGLLSGGQQQMLAISRALMAAPEVMLLDEPSLGLSPRLTREIFEIVIRINRERGTTLLLVEQNANMALNVADHGYVLENGRIVMEDSC 222          
BLAST of mRNA_P-wetherbeei_contig58946.1.1 vs. uniprot
Match: A0A1F3YIA0_9PROT (ABC transporter ATP-binding protein n=3 Tax=Bacteria TaxID=2 RepID=A0A1F3YIA0_9PROT)

HSP 1 Score: 258 bits (659), Expect = 1.230e-84
Identity = 131/165 (79.39%), Postives = 145/165 (87.88%), Query Frame = 1
Query:    1 KGQITYAGNEIAGWAPDRIVRTGISHVPEGREVFPLLSVEDNLKMGAYTRSDRDGVARDTETVYGYFPILKERARQDAGLLSGGQQQMLAIARALLSAPKVMLLDEPSLGLSPLLTKEIFEIIVRINRERGTTILLVEQNAQMALKTADFGYVLEVGRIVMEDTC 495
            KGQI +   EI    PD IVR GI HVPEGREVF LL+VE+NL+MGAYTRSD DG+A D ETVYGYFPIL+ERARQ+AG LSGGQQQMLAI+RALLS PK+ML+DEPSLGLSPLLT+EIF IIVRINRE+GTTILLVEQNA MAL+ AD+GYVLEVGRIVMEDTC
Sbjct:   59 KGQIRFESEEIQKRDPDWIVRRGIGHVPEGREVFALLTVEENLRMGAYTRSDADGIASDIETVYGYFPILRERARQEAGKLSGGQQQMLAISRALLSRPKLMLMDEPSLGLSPLLTQEIFRIIVRINREKGTTILLVEQNANMALEVADYGYVLEVGRIVMEDTC 223          
BLAST of mRNA_P-wetherbeei_contig58946.1.1 vs. uniprot
Match: A0A536VP64_9PROT (ABC transporter ATP-binding protein n=2 Tax=Proteobacteria TaxID=1224 RepID=A0A536VP64_9PROT)

HSP 1 Score: 258 bits (658), Expect = 1.800e-84
Identity = 129/166 (77.71%), Postives = 145/166 (87.35%), Query Frame = 1
Query:    1 KGQITYAGNEIAGWAPDRIVRTGISHVPEGREVFPLLSVEDNLKMGAYTRSDRDGVARDTETVYGYFPILKERARQDAGLLSGGQQQMLAIARALLSAPKVMLLDEPSLGLSPLLTKEIFEIIVRINRERGTTILLVEQNAQMALKTADFGYVLEVGRIVMEDTCA 498
            KG I + G +I    P  IV++G+SHVPEGREVFPLLSV DNL MGAYTR DRDGVARD ETV+GYFPIL+ERA QDAGLLSGGQQQMLAI+RAL++AP++MLLDEPSLGLSP LT+EIFEI+VRINRERGTTILLVEQNA MAL  +D+GYVLE GRIVMED CA
Sbjct:   60 KGSIEFRGRDITARDPAEIVQSGLSHVPEGREVFPLLSVRDNLMMGAYTRHDRDGVARDVETVFGYFPILRERAAQDAGLLSGGQQQMLAISRALMAAPQLMLLDEPSLGLSPKLTREIFEIVVRINRERGTTILLVEQNANMALNASDYGYVLENGRIVMEDDCA 225          
BLAST of mRNA_P-wetherbeei_contig58946.1.1 vs. uniprot
Match: A0A363TXQ8_9BRAD (ABC transporter ATP-binding protein n=1 Tax=Bradyrhizobiaceae bacterium TaxID=2072420 RepID=A0A363TXQ8_9BRAD)

HSP 1 Score: 257 bits (657), Expect = 2.390e-84
Identity = 131/166 (78.92%), Postives = 145/166 (87.35%), Query Frame = 1
Query:    1 KGQITYAGNEIAGWAPDRIVRTGISHVPEGREVFPLLSVEDNLKMGAYTRSDRDGVARDTETVYGYFPILKERARQDAGLLSGGQQQMLAIARALLSAPKVMLLDEPSLGLSPLLTKEIFEIIVRINRERGTTILLVEQNAQMALKTADFGYVLEVGRIVMEDTCA 498
            KGQ+ + G EI G APDRIVR G+  VPEGREVFPLLSVEDNL+MGAYTR D DGVA+D   V+GYFPIL+ERARQ+AG LSGGQQQMLAIARALL+ P V+L+DEPSLGLSP LTKEIF+II+RINRERG TILLVEQNA MALK AD+GYVLEVGRIVMEDT A
Sbjct:   58 KGQVKFRGEEIQGRAPDRIVRAGLVQVPEGREVFPLLSVEDNLRMGAYTRRDADGVAQDLAMVFGYFPILRERARQEAGQLSGGQQQMLAIARALLARPSVVLMDEPSLGLSPKLTKEIFDIILRINRERGVTILLVEQNAHMALKVADYGYVLEVGRIVMEDTGA 223          
BLAST of mRNA_P-wetherbeei_contig58946.1.1 vs. uniprot
Match: A0A0F0FL82_9BURK (ABC transporter ATP-binding protein n=6 Tax=Burkholderiaceae TaxID=119060 RepID=A0A0F0FL82_9BURK)

HSP 1 Score: 257 bits (657), Expect = 2.810e-84
Identity = 129/166 (77.71%), Postives = 144/166 (86.75%), Query Frame = 1
Query:    1 KGQITYAGNEIAGWAPDRIVRTGISHVPEGREVFPLLSVEDNLKMGAYTRSDRDGVARDTETVYGYFPILKERARQDAGLLSGGQQQMLAIARALLSAPKVMLLDEPSLGLSPLLTKEIFEIIVRINRERGTTILLVEQNAQMALKTADFGYVLEVGRIVMEDTCA 498
            +G I + G  IA   P +IVR G+SHVPEGREVFPLLSV DNL MGAYTR DRDGVARD E VYGYFP+L+ERA QDAGLLSGGQQQMLAI+RAL++AP+++LLDEPSLGLSP LTK+IFEI+VRINRERGTTILLVEQNA MAL  AD+GYVLE GRIV EDTCA
Sbjct:   63 RGSIAFKGESIAAMDPAQIVRRGLSHVPEGREVFPLLSVRDNLLMGAYTRRDRDGVARDMEAVYGYFPVLRERAGQDAGLLSGGQQQMLAISRALMAAPELILLDEPSLGLSPKLTKDIFEIVVRINRERGTTILLVEQNANMALNAADYGYVLENGRIVAEDTCA 228          
BLAST of mRNA_P-wetherbeei_contig58946.1.1 vs. uniprot
Match: A0A0C4YMW2_9BURK (Branched-chain amino acid transport ATP-binding protein LivF n=6 Tax=Cupriavidus basilensis TaxID=68895 RepID=A0A0C4YMW2_9BURK)

HSP 1 Score: 256 bits (655), Expect = 7.590e-84
Identity = 129/166 (77.71%), Postives = 144/166 (86.75%), Query Frame = 1
Query:    1 KGQITYAGNEIAGWAPDRIVRTGISHVPEGREVFPLLSVEDNLKMGAYTRSDRDGVARDTETVYGYFPILKERARQDAGLLSGGQQQMLAIARALLSAPKVMLLDEPSLGLSPLLTKEIFEIIVRINRERGTTILLVEQNAQMALKTADFGYVLEVGRIVMEDTCA 498
            +G IT+ G  IA   P +IVR G+SHVPEGREVFPLLSV DNL MGAYTR DRDGVARD E VY YFP+L+ERA QDAGLLSGGQQQMLAI+RAL++AP+++LLDEPSLGLSP LTK+IFEI+VRINRERGTTILLVEQNA MAL  AD+GYVLE GRIV EDTCA
Sbjct:   72 RGSITFKGESIAAMDPAQIVRRGLSHVPEGREVFPLLSVRDNLLMGAYTRRDRDGVARDMEMVYDYFPVLRERAAQDAGLLSGGQQQMLAISRALMAAPELILLDEPSLGLSPKLTKDIFEIVVRINRERGTTILLVEQNANMALNAADYGYVLENGRIVAEDTCA 237          
BLAST of mRNA_P-wetherbeei_contig58946.1.1 vs. uniprot
Match: UPI000785C7CC (ABC transporter ATP-binding protein n=1 Tax=Variovorax paradoxus TaxID=34073 RepID=UPI000785C7CC)

HSP 1 Score: 256 bits (653), Expect = 1.000e-83
Identity = 129/166 (77.71%), Postives = 142/166 (85.54%), Query Frame = 1
Query:    1 KGQITYAGNEIAGWAPDRIVRTGISHVPEGREVFPLLSVEDNLKMGAYTRSDRDGVARDTETVYGYFPILKERARQDAGLLSGGQQQMLAIARALLSAPKVMLLDEPSLGLSPLLTKEIFEIIVRINRERGTTILLVEQNAQMALKTADFGYVLEVGRIVMEDTCA 498
            KG I++ G +I    P  +VR G+SHVPEGREVFPLLSV DNL MGAYTR DRDGVARD ETV+GYFPIL+ERAR DAGLLSGGQQQMLAIARA+L+ P ++LLDEPSLGLSP LTKEIFEI+VRINRERGTTILLVEQNA MAL  AD GYVLE GRIVMED C+
Sbjct:   59 KGSISFRGEDITAREPSEVVRLGLSHVPEGREVFPLLSVHDNLLMGAYTRKDRDGVARDMETVFGYFPILRERARIDAGLLSGGQQQMLAIARAILAGPALILLDEPSLGLSPKLTKEIFEIVVRINRERGTTILLVEQNANMALNVADHGYVLENGRIVMEDRCS 224          
BLAST of mRNA_P-wetherbeei_contig58946.1.1 vs. uniprot
Match: A0A1D9GUA6_9BURK (ABC transporter ATP-binding protein n=2 Tax=Burkholderiaceae TaxID=119060 RepID=A0A1D9GUA6_9BURK)

HSP 1 Score: 256 bits (653), Expect = 1.630e-83
Identity = 128/165 (77.58%), Postives = 142/165 (86.06%), Query Frame = 1
Query:    4 GQITYAGNEIAGWAPDRIVRTGISHVPEGREVFPLLSVEDNLKMGAYTRSDRDGVARDTETVYGYFPILKERARQDAGLLSGGQQQMLAIARALLSAPKVMLLDEPSLGLSPLLTKEIFEIIVRINRERGTTILLVEQNAQMALKTADFGYVLEVGRIVMEDTCA 498
            G + + G +I G  P RIVR G+ HVPEGREVFPLLSV DNL MGAYTR DRDGVARD ETVYGYFPIL+ERA Q AGLLSGGQQQMLAI+RAL+ AP+++LLDEPSLGLSP LT+EIFEI+VRINRERGTTILLVEQNA MAL  AD+GYVLE GRIV ED+CA
Sbjct:   75 GSVRFRGEDITGHDPARIVRRGLCHVPEGREVFPLLSVRDNLMMGAYTRHDRDGVARDLETVYGYFPILRERAGQHAGLLSGGQQQMLAISRALMGAPELVLLDEPSLGLSPKLTREIFEIVVRINRERGTTILLVEQNANMALNVADYGYVLETGRIVAEDSCA 239          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig58946.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0S8B706_9PROT9.130e-8779.52ABC transporter ATP-binding protein n=1 Tax=Betapr... [more]
A0A2S5T573_9BURK1.210e-8580.12ABC transporter ATP-binding protein n=1 Tax=Schleg... [more]
A0A5C6U3R6_9BURK5.890e-8578.18ABC transporter ATP-binding protein n=2 Tax=Burkho... [more]
A0A1F3YIA0_9PROT1.230e-8479.39ABC transporter ATP-binding protein n=3 Tax=Bacter... [more]
A0A536VP64_9PROT1.800e-8477.71ABC transporter ATP-binding protein n=2 Tax=Proteo... [more]
A0A363TXQ8_9BRAD2.390e-8478.92ABC transporter ATP-binding protein n=1 Tax=Bradyr... [more]
A0A0F0FL82_9BURK2.810e-8477.71ABC transporter ATP-binding protein n=6 Tax=Burkho... [more]
A0A0C4YMW2_9BURK7.590e-8477.71Branched-chain amino acid transport ATP-binding pr... [more]
UPI000785C7CC1.000e-8377.71ABC transporter ATP-binding protein n=1 Tax=Variov... [more]
A0A1D9GUA6_9BURK1.630e-8377.58ABC transporter ATP-binding protein n=2 Tax=Burkho... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig58946contigP-wetherbeei_contig58946:1..498 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog614083.AWQR01000001_gene3116
PFAMsABC_tran
Model size498
Max annot lvl28216|Betaproteobacteria
KEGG koko:K01996
KEGG TC3.A.1.4
KEGG Pathwayko02010,ko02024,map02010,map02024
KEGG ModuleM00237
Hectar predicted targeting categoryother localisation
Exons1
Evalue7.45e-85
EggNOG OGsCOG0410@1|root,COG0410@2|Bacteria,1MVVC@1224|Proteobacteria,2VJNC@28216|Betaproteobacteria,4ABEP@80864|Comamonadaceae
DescriptionAAA domain, putative AbiEii toxin, Type IV TA system
Cds size498
COG categoryE
BRITEko00000,ko00001,ko00002,ko02000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186871.6341462-CDS-P-wetherbeei_contig58946:0..4981683186871.6341462-CDS-P-wetherbeei_contig58946:0..498Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig58946 1..498 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig58946.1.1prot_P-wetherbeei_contig58946.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig58946 1..498 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig58946.1.1

>prot_P-wetherbeei_contig58946.1.1 ID=prot_P-wetherbeei_contig58946.1.1|Name=mRNA_P-wetherbeei_contig58946.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=166bp
KGQITYAGNEIAGWAPDRIVRTGISHVPEGREVFPLLSVEDNLKMGAYTR
SDRDGVARDTETVYGYFPILKERARQDAGLLSGGQQQMLAIARALLSAPK
VMLLDEPSLGLSPLLTKEIFEIIVRINRERGTTILLVEQNAQMALKTADF
GYVLEVGRIVMEDTCA
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mRNA from alignment at P-wetherbeei_contig58946:1..498+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig58946.1.1 ID=mRNA_P-wetherbeei_contig58946.1.1|Name=mRNA_P-wetherbeei_contig58946.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=498bp|location=Sequence derived from alignment at P-wetherbeei_contig58946:1..498+ (Phaeothamnion wetherbeei SAG_119_79)
AAGGGGCAGATCACCTATGCCGGCAACGAGATCGCGGGCTGGGCGCCTGA CCGCATCGTGCGCACCGGCATCAGCCACGTGCCGGAAGGGCGCGAGGTGT TTCCGCTCTTGTCGGTGGAAGACAACCTCAAGATGGGCGCCTACACCCGC AGCGACCGCGACGGGGTGGCGCGTGACACCGAAACTGTCTATGGCTACTT TCCAATCCTGAAAGAGCGGGCCAGGCAGGACGCGGGCCTGCTTTCCGGTG GCCAGCAGCAGATGCTGGCCATCGCGCGCGCACTGCTTTCCGCACCGAAG GTGATGCTCCTCGACGAGCCCTCGCTGGGCTTGTCGCCCTTGCTGACGAA AGAAATCTTCGAGATCATCGTGCGCATCAACCGCGAGCGCGGTACCACCA TCCTGCTGGTGGAGCAGAACGCGCAAATGGCGCTCAAGACGGCCGATTTC GGCTATGTGCTCGAAGTCGGGCGCATCGTCATGGAAGACACCTGCGCG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig58946:1..498+

>mRNA_P-wetherbeei_contig58946.1.1 ID=mRNA_P-wetherbeei_contig58946.1.1|Name=mRNA_P-wetherbeei_contig58946.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=498bp|location=Sequence derived from alignment at P-wetherbeei_contig58946:1..498+ (Phaeothamnion wetherbeei SAG_119_79)
AAGGGGCAGATCACCTATGCCGGCAACGAGATCGCGGGCTGGGCGCCTGA
CCGCATCGTGCGCACCGGCATCAGCCACGTGCCGGAAGGGCGCGAGGTGT
TTCCGCTCTTGTCGGTGGAAGACAACCTCAAGATGGGCGCCTACACCCGC
AGCGACCGCGACGGGGTGGCGCGTGACACCGAAACTGTCTATGGCTACTT
TCCAATCCTGAAAGAGCGGGCCAGGCAGGACGCGGGCCTGCTTTCCGGTG
GCCAGCAGCAGATGCTGGCCATCGCGCGCGCACTGCTTTCCGCACCGAAG
GTGATGCTCCTCGACGAGCCCTCGCTGGGCTTGTCGCCCTTGCTGACGAA
AGAAATCTTCGAGATCATCGTGCGCATCAACCGCGAGCGCGGTACCACCA
TCCTGCTGGTGGAGCAGAACGCGCAAATGGCGCTCAAGACGGCCGATTTC
GGCTATGTGCTCGAAGTCGGGCGCATCGTCATGGAAGACACCTGCGCG
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