mRNA_P-wetherbeei_contig58941.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_P-wetherbeei_contig58941.1.1
Unique Name	mRNA_P-wetherbeei_contig58941.1.1
Type	mRNA
Organism	Phaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)

Homology

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BLAST of mRNA_P-wetherbeei_contig58941.1.1 vs. uniprot
Match: A0A7V3XC12_9BACT (YncE family protein n=1 Tax=bacterium TaxID=1869227 RepID=A0A7V3XC12_9BACT)

HSP 1 Score: 79.0 bits (193), Expect = 4.840e-16
Identity = 38/55 (69.09%), Postives = 45/55 (81.82%), Query Frame = 1

Query:    4 VGTRSPAQLLVLDTTTGRIVATLASVGDADDIFYDRNAARIYVSGGEGFVYVFEQ 168
            VG R PA+L+VLDT +GR+VA L SVGDADDIFY+    RIY+SGGEGF+ VFEQ
Sbjct:  225 VGFRKPAKLIVLDTESGRVVANLDSVGDADDIFYEATHKRIYMSGGEGFIDVFEQ 279

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BLAST of mRNA_P-wetherbeei_contig58941.1.1 vs. uniprot
Match: A0A2V5TY40_9BACT (Uncharacterized protein n=1 Tax=Verrucomicrobia bacterium TaxID=2026799 RepID=A0A2V5TY40_9BACT)

HSP 1 Score: 77.0 bits (188), Expect = 1.790e-15
Identity = 37/55 (67.27%), Postives = 43/55 (78.18%), Query Frame = 1

Query:    4 VGTRSPAQLLVLDTTTGRIVATLASVGDADDIFYDRNAARIYVSGGEGFVYVFEQ 168
            VG R+PA+L VLDT +GR+V+ L  VGD DD+FYD N  RIYVSGGEGFV V EQ
Sbjct:  188 VGCRNPARLAVLDTASGRVVSNLPIVGDTDDLFYDANRKRIYVSGGEGFVDVIEQ 242

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BLAST of mRNA_P-wetherbeei_contig58941.1.1 vs. uniprot
Match: A0A2V9JR50_9BACT (Uncharacterized protein n=1 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A2V9JR50_9BACT)

HSP 1 Score: 74.7 bits (182), Expect = 1.850e-14
Identity = 35/56 (62.50%), Postives = 46/56 (82.14%), Query Frame = 1

Query:    1 LVGTRSPAQLLVLDTTTGRIVATLASVGDADDIFYDRNAARIYVSGGEGFVYVFEQ 168
            LV TR PA+LLVLD+ TG++VA+ ++VGDADD+FYD    R+Y+SGGEGF+ VF Q
Sbjct:  224 LVVTRRPARLLVLDSQTGKLVASESAVGDADDVFYDAALKRVYISGGEGFIDVFGQ 279

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BLAST of mRNA_P-wetherbeei_contig58941.1.1 vs. uniprot
Match: A0A2V8ZCC3_9BACT (Uncharacterized protein n=1 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A2V8ZCC3_9BACT)

HSP 1 Score: 74.3 bits (181), Expect = 2.390e-14
Identity = 35/55 (63.64%), Postives = 45/55 (81.82%), Query Frame = 1

Query:    4 VGTRSPAQLLVLDTTTGRIVATLASVGDADDIFYDRNAARIYVSGGEGFVYVFEQ 168
            V TR PA+LLV+DT +G+IV TL++VGD DD+FYD++  RIY SGGEG + VFEQ
Sbjct:  223 VVTRYPARLLVIDTGSGKIVQTLSAVGDCDDVFYDQSRKRIYASGGEGAISVFEQ 277

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BLAST of mRNA_P-wetherbeei_contig58941.1.1 vs. uniprot
Match: A0A534U024_9DELT (YncE family protein n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A534U024_9DELT)

HSP 1 Score: 73.6 bits (179), Expect = 4.220e-14
Identity = 32/55 (58.18%), Postives = 44/55 (80.00%), Query Frame = 1

Query:    4 VGTRSPAQLLVLDTTTGRIVATLASVGDADDIFYDRNAARIYVSGGEGFVYVFEQ 168
            VG R PA+++V DT +G++VA L S GDADDIFYD +  R+Y+SGGEGF+ +F+Q
Sbjct:  211 VGFRKPAKIIVFDTESGKMVADLDSAGDADDIFYDSSRRRVYISGGEGFLSIFQQ 265

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BLAST of mRNA_P-wetherbeei_contig58941.1.1 vs. uniprot
Match: A0A2V8PQ68_9BACT (Uncharacterized protein n=1 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A2V8PQ68_9BACT)

HSP 1 Score: 73.6 bits (179), Expect = 4.580e-14
Identity = 34/55 (61.82%), Postives = 45/55 (81.82%), Query Frame = 1

Query:    4 VGTRSPAQLLVLDTTTGRIVATLASVGDADDIFYDRNAARIYVSGGEGFVYVFEQ 168
            V TR PA+LLV+DT++G+ V TL++VGD DD+FYD++  RIY SGGEG + VFEQ
Sbjct:  223 VVTRLPARLLVMDTSSGKTVQTLSAVGDCDDVFYDQSRKRIYASGGEGAISVFEQ 277

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BLAST of mRNA_P-wetherbeei_contig58941.1.1 vs. uniprot
Match: A0A2V9L1A5_9BACT (Uncharacterized protein n=1 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A2V9L1A5_9BACT)

HSP 1 Score: 73.2 bits (178), Expect = 6.420e-14
Identity = 34/56 (60.71%), Postives = 44/56 (78.57%), Query Frame = 1

Query:    1 LVGTRSPAQLLVLDTTTGRIVATLASVGDADDIFYDRNAARIYVSGGEGFVYVFEQ 168
            LV TR PA  +VLD+ TG+ VA+ ++VGDADD+FYD    RIY+SGGEGF+ +FEQ
Sbjct:  224 LVVTRRPAHFIVLDSQTGKPVASQSAVGDADDVFYDAARKRIYISGGEGFIDIFEQ 279

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BLAST of mRNA_P-wetherbeei_contig58941.1.1 vs. uniprot
Match: A0A2V8ZHX3_9BACT (Uncharacterized protein n=1 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A2V8ZHX3_9BACT)

HSP 1 Score: 72.8 bits (177), Expect = 8.550e-14
Identity = 34/55 (61.82%), Postives = 44/55 (80.00%), Query Frame = 1

Query:    4 VGTRSPAQLLVLDTTTGRIVATLASVGDADDIFYDRNAARIYVSGGEGFVYVFEQ 168
            V TR PA+LL +DT +G+IV TL++VGD DD+FYD++  RIY SGGEG + VFEQ
Sbjct:  219 VVTRLPARLLAIDTGSGKIVQTLSAVGDCDDVFYDQSRKRIYASGGEGAISVFEQ 273

[Close]

BLAST of mRNA_P-wetherbeei_contig58941.1.1 vs. uniprot
Match: A0A2V9L118_9BACT (Uncharacterized protein n=1 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A2V9L118_9BACT)

HSP 1 Score: 72.8 bits (177), Expect = 8.880e-14
Identity = 34/56 (60.71%), Postives = 44/56 (78.57%), Query Frame = 1

Query:    1 LVGTRSPAQLLVLDTTTGRIVATLASVGDADDIFYDRNAARIYVSGGEGFVYVFEQ 168
            LV TR PA+L+VLDT +G+ VA+  +VGDADD FYD    R+Y+SGGEGFV +F+Q
Sbjct:  224 LVVTRKPARLIVLDTQSGKAVASQPAVGDADDAFYDAARKRVYISGGEGFVDIFDQ 279

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BLAST of mRNA_P-wetherbeei_contig58941.1.1 vs. uniprot
Match: A0A2U1RHZ3_9BACT (Uncharacterized protein n=1 Tax=candidate division NC10 bacterium TaxID=2072417 RepID=A0A2U1RHZ3_9BACT)

HSP 1 Score: 72.4 bits (176), Expect = 1.280e-13
Identity = 36/55 (65.45%), Postives = 40/55 (72.73%), Query Frame = 1

Query:    4 VGTRSPAQLLVLDTTTGRIVATLASVGDADDIFYDRNAARIYVSGGEGFVYVFEQ 168
            VG R PA LLV DT +G+ VA L S  DADDIFYD    RIY+SGGEGF+ VFEQ
Sbjct:  233 VGCRRPATLLVFDTESGKTVARLDSTADADDIFYDAARGRIYLSGGEGFIEVFEQ 287

The following BLAST results are available for this feature:

BLAST of mRNA_P-wetherbeei_contig58941.1.1 vs. uniprot

BLAST of mRNA_P-wetherbeei_contig58941.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A7V3XC12_9BACT	4.840e-16	69.09	YncE family protein n=1 Tax=bacterium TaxID=186922...	[more]
A0A2V5TY40_9BACT	1.790e-15	67.27	Uncharacterized protein n=1 Tax=Verrucomicrobia ba...	[more]
A0A2V9JR50_9BACT	1.850e-14	62.50	Uncharacterized protein n=1 Tax=Acidobacteria bact...	[more]
A0A2V8ZCC3_9BACT	2.390e-14	63.64	Uncharacterized protein n=1 Tax=Acidobacteria bact...	[more]
A0A534U024_9DELT	4.220e-14	58.18	YncE family protein n=1 Tax=Deltaproteobacteria ba...	[more]
A0A2V8PQ68_9BACT	4.580e-14	61.82	Uncharacterized protein n=1 Tax=Acidobacteria bact...	[more]
A0A2V9L1A5_9BACT	6.420e-14	60.71	Uncharacterized protein n=1 Tax=Acidobacteria bact...	[more]
A0A2V8ZHX3_9BACT	8.550e-14	61.82	Uncharacterized protein n=1 Tax=Acidobacteria bact...	[more]
A0A2V9L118_9BACT	8.880e-14	60.71	Uncharacterized protein n=1 Tax=Acidobacteria bact...	[more]
A0A2U1RHZ3_9BACT	1.280e-13	65.45	Uncharacterized protein n=1 Tax=candidate division...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
P-wetherbeei_contig58941	contig	P-wetherbeei_contig58941:331..498 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.0	2022-07-08

Properties


Property Name	Value
Stop	0
Start	0
Seed ortholog	929713.NIASO_01735
Model size	168
Max annot lvl	2\|Bacteria
Hectar predicted targeting category	no signal peptide or anchor
Exons	1
Evalue	2.42e-11
EggNOG OGs	COG3391@1\|root,COG3391@2\|Bacteria
Description	amine dehydrogenase activity
Cds size	168
COG category	CO

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1683186871.6096222-CDS-P-wetherbeei_contig58941:330..498	1683186871.6096222-CDS-P-wetherbeei_contig58941:330..498	Phaeothamnion wetherbeei SAG_119_79	CDS	P-wetherbeei_contig58941 331..498 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_P-wetherbeei_contig58941.1.1	prot_P-wetherbeei_contig58941.1.1	Phaeothamnion wetherbeei SAG_119_79	polypeptide	P-wetherbeei_contig58941 331..498 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at P-wetherbeei_contig58941:331..498+
coding sequence from alignment at P-wetherbeei_contig58941:331..498+

protein sequence of mRNA_P-wetherbeei_contig58941.1.1

>prot_P-wetherbeei_contig58941.1.1 ID=prot_P-wetherbeei_contig58941.1.1|Name=mRNA_P-wetherbeei_contig58941.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=56bp
LVGTRSPAQLLVLDTTTGRIVATLASVGDADDIFYDRNAARIYVSGGEGF
VYVFEQ

mRNA from alignment at P-wetherbeei_contig58941:331..498+

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_P-wetherbeei_contig58941.1.1 ID=mRNA_P-wetherbeei_contig58941.1.1|Name=mRNA_P-wetherbeei_contig58941.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=168bp|location=Sequence derived from alignment at P-wetherbeei_contig58941:331..498+ (Phaeothamnion wetherbeei SAG_119_79)
TTGGTGGGTACGCGCAGTCCCGCGCAGTTGCTTGTGCTCGACACGACGAC
CGGCCGCATTGTCGCCACCCTGGCGAGCGTGGGCGATGCGGACGATATTT
TCTACGACCGGAACGCTGCACGGATTTATGTTTCCGGTGGCGAAGGATTC
GTCTATGTTTTCGAGCAA

Coding sequence (CDS) from alignment at P-wetherbeei_contig58941:331..498+

>mRNA_P-wetherbeei_contig58941.1.1 ID=mRNA_P-wetherbeei_contig58941.1.1|Name=mRNA_P-wetherbeei_contig58941.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=168bp|location=Sequence derived from alignment at P-wetherbeei_contig58941:331..498+ (Phaeothamnion wetherbeei SAG_119_79)
TTGGTGGGTACGCGCAGTCCCGCGCAGTTGCTTGTGCTCGACACGACGAC
CGGCCGCATTGTCGCCACCCTGGCGAGCGTGGGCGATGCGGACGATATTT
TCTACGACCGGAACGCTGCACGGATTTATGTTTCCGGTGGCGAAGGATTC
GTCTATGTTTTCGAGCAA