mRNA_P-wetherbeei_contig58929.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig58929.1.1
Unique NamemRNA_P-wetherbeei_contig58929.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig58929.1.1 vs. uniprot
Match: A0A1F3A934_9PROT (Ammonia monooxygenase n=2 Tax=Alphaproteobacteria TaxID=28211 RepID=A0A1F3A934_9PROT)

HSP 1 Score: 246 bits (629), Expect = 8.060e-79
Identity = 136/156 (87.18%), Postives = 140/156 (89.74%), Query Frame = 1
Query:   31 TTALWCISLGAASVMTFMAEAYGADIRLVALMQYLRIFLVAGIAALVARMFGVSTSYGAAAIVWFPEVHWLPLAETLALAIVGPLIARVLNIPAGAFLVPMVVGIGLTHFDLMTIELPTWLLAASYALVGWNVGLRFTRPLLVHAALALPRILVCT 498
            TTALW IS GAASVMTFMAEAYGADIRLVALMQYLRIFLVAGIAALVAR+FGVS+SYGAAAIVWFPEVH LPLAETLALAIVGP IA V  IPAGAFLVPMV GI L H   MTIELP WLLAASYALVGWN+GLRFTRPLLVHAA ALPRI+ CT
Sbjct:  112 TTALWGISPGAASVMTFMAEAYGADIRLVALMQYLRIFLVAGIAALVARLFGVSSSYGAAAIVWFPEVHALPLAETLALAIVGPAIAWVARIPAGAFLVPMVAGIVLAHLGWMTIELPAWLLAASYALVGWNIGLRFTRPLLVHAARALPRIVACT 267          
BLAST of mRNA_P-wetherbeei_contig58929.1.1 vs. uniprot
Match: A0A537NAA1_9PROT (AbrB family transcriptional regulator n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A537NAA1_9PROT)

HSP 1 Score: 214 bits (544), Expect = 6.000e-66
Identity = 114/155 (73.55%), Postives = 130/155 (83.87%), Query Frame = 1
Query:   31 TTALWCISLGAASVMTFMAEAYGADIRLVALMQYLRIFLVAGIAALVARMFGVSTSYGAAAIVWFPEVHWLPLAETLALAIVGPLIARVLNIPAGAFLVPMVVGIGLTHFDLMTIELPTWLLAASYALVGWNVGLRFTRPLLVHAALALPRILVC 495
            TTALW  S GAASVMT MAE+YGAD+RLVA MQY R+ LVA +AALV R+FGV+ ++  AAIVWFP V  L   ETLALA++GPL+AR LNIPAGAFLVPM+ GI LTH  LM+IELPTWLLAASYALVGWNVGLRF+RPLL+HAA ALPR+L C
Sbjct:  112 TTALWGTSPGAASVMTIMAESYGADVRLVAFMQYGRVVLVAVVAALVTRLFGVNPAHAPAAIVWFPPVDGLAFGETLALAVIGPLVARRLNIPAGAFLVPMIAGIVLTHLGLMSIELPTWLLAASYALVGWNVGLRFSRPLLIHAARALPRVLAC 266          
BLAST of mRNA_P-wetherbeei_contig58929.1.1 vs. uniprot
Match: A0A6A7MAB6_9PROT (AbrB family transcriptional regulator (Fragment) n=1 Tax=Rhodospirillales bacterium TaxID=2026786 RepID=A0A6A7MAB6_9PROT)

HSP 1 Score: 209 bits (533), Expect = 1.040e-64
Identity = 116/156 (74.36%), Postives = 128/156 (82.05%), Query Frame = 1
Query:   31 TTALWCISLGAASVMTFMAEAYGADIRLVALMQYLRIFLVAGIAALVARMFGVSTSYGAAAIVWFPEVHWLPLAETLALAIVGPLIARVLNIPAGAFLVPMVVGIGLTHFDLMTIELPTWLLAASYALVGWNVGLRFTRPLLVHAALALPRILVCT 498
            TTALW  S GAASVMT MAE YGAD RLVA MQYLR+ LVA IAA+VAR+FGV+    A  IVWFP+V W+PLAETLALAI+GPLIA+ L IPAGAFLVP+V+GI LTHF L+ IELPTWLLAASYA VGWNVGLRFTRPLL+HA  ALP I   T
Sbjct:   81 TTALWGTSAGAASVMTIMAEHYGADPRLVAFMQYLRVVLVAVIAAIVARLFGVAPVQAAHGIVWFPDVAWVPLAETLALAIIGPLIAQRLRIPAGAFLVPLVLGIVLTHFGLIRIELPTWLLAASYAFVGWNVGLRFTRPLLIHALKALPVIFGAT 236          
BLAST of mRNA_P-wetherbeei_contig58929.1.1 vs. uniprot
Match: A0A512N1Z4_9HYPH (Ammonia monooxygenase n=2 Tax=Alphaproteobacteria TaxID=28211 RepID=A0A512N1Z4_9HYPH)

HSP 1 Score: 210 bits (535), Expect = 1.650e-64
Identity = 117/156 (75.00%), Postives = 127/156 (81.41%), Query Frame = 1
Query:   31 TTALWCISLGAASVMTFMAEAYGADIRLVALMQYLRIFLVAGIAALVARMFGVSTSYGAAAIVWFPEVHWLPLAETLALAIVGPLIARVLNIPAGAFLVPMVVGIGLTHFDLMTIELPTWLLAASYALVGWNVGLRFTRPLLVHAALALPRILVCT 498
            TTALW  S GAASVMT MAE YGAD RLVA MQYLR+ LVA IAALVAR+FGV+ S+ A  IVWFP V W+PL ETLALAI GP+IAR L IPAGAFLVP+V+GI LTHF L+ IELPTWLLAASYA VGWNVGLRFTRPLL+HA  ALP I   T
Sbjct:  120 TTALWGTSAGAASVMTIMAEHYGADPRLVAFMQYLRVVLVAAIAALVARLFGVAPSHAAHDIVWFPIVAWVPLGETLALAIAGPIIARWLRIPAGAFLVPLVLGIVLTHFGLVRIELPTWLLAASYAFVGWNVGLRFTRPLLIHALKALPVIFGAT 275          
BLAST of mRNA_P-wetherbeei_contig58929.1.1 vs. uniprot
Match: A0A521LPR4_9HYPH (AbrB family transcriptional regulator n=1 Tax=Reyranella sp. TaxID=1929291 RepID=A0A521LPR4_9HYPH)

HSP 1 Score: 206 bits (524), Expect = 6.350e-63
Identity = 111/155 (71.61%), Postives = 127/155 (81.94%), Query Frame = 1
Query:   31 TTALWCISLGAASVMTFMAEAYGADIRLVALMQYLRIFLVAGIAALVARMFGVSTSYGAAAIVWFPEVHWLPLAETLALAIVGPLIARVLNIPAGAFLVPMVVGIGLTHFDLMTIELPTWLLAASYALVGWNVGLRFTRPLLVHAALALPRILVC 495
            +TALW +S GAASVMT+MAEAY AD+R+VA MQYLR+ LVA +AALVAR+FGV ++    AIVWFPEV WLPL ETLALAI GP IAR L IPAGAFLVP+V+GI ++H  L+ +ELPTWLLAASYALVGWNVGLRFTR LLVH    LP IL C
Sbjct:  116 STALWGVSPGAASVMTYMAEAYNADMRMVAFMQYLRVVLVAAVAALVARLFGVHSTQAPDAIVWFPEVAWLPLGETLALAIAGPWIARFLKIPAGAFLVPLVLGILVSHVGLVRLELPTWLLAASYALVGWNVGLRFTRALLVHVLRQLPGILAC 270          
BLAST of mRNA_P-wetherbeei_contig58929.1.1 vs. uniprot
Match: A0A1T4TFR0_9HYPH (Uncharacterized protein n=1 Tax=Enhydrobacter aerosaccus TaxID=225324 RepID=A0A1T4TFR0_9HYPH)

HSP 1 Score: 205 bits (521), Expect = 1.400e-62
Identity = 111/156 (71.15%), Postives = 128/156 (82.05%), Query Frame = 1
Query:   31 TTALWCISLGAASVMTFMAEAYGADIRLVALMQYLRIFLVAGIAALVARMFGVSTSYGAAAIVWFPEVHWLPLAETLALAIVGPLIARVLNIPAGAFLVPMVVGIGLTHFDLMTIELPTWLLAASYALVGWNVGLRFTRPLLVHAALALPRILVCT 498
            TTALW  S GAAS+MT MAE YGAD+RLVA MQY R+  VAG+AALVA  F  +T++ A AIVWFP V WL LAET+ALAIVGP +AR+L IPAGAFLVPMV+GI L HF LM IELPTWLLA +YALVGWN+GLRFT+PLL+HAA +LP I+V T
Sbjct:  105 TTALWGSSPGAASIMTLMAEEYGADVRLVAFMQYFRVLAVAGMAALVAHFFAANTAH-APAIVWFPPVDWLALAETVALAIVGPYLARLLRIPAGAFLVPMVIGIVLAHFGLMKIELPTWLLAGAYALVGWNIGLRFTKPLLIHAARSLPVIVVFT 259          
BLAST of mRNA_P-wetherbeei_contig58929.1.1 vs. uniprot
Match: A0A1Q3KS68_9PROT (Ammonia monooxygenase n=3 Tax=Alphaproteobacteria TaxID=28211 RepID=A0A1Q3KS68_9PROT)

HSP 1 Score: 197 bits (500), Expect = 2.660e-59
Identity = 103/155 (66.45%), Postives = 123/155 (79.35%), Query Frame = 1
Query:   31 TTALWCISLGAASVMTFMAEAYGADIRLVALMQYLRIFLVAGIAALVARMFGVSTSYGAAAIVWFPEVHWLPLAETLALAIVGPLIARVLNIPAGAFLVPMVVGIGLTHFDLMTIELPTWLLAASYALVGWNVGLRFTRPLLVHAALALPRILVC 495
            TTALW IS GAASVMT M+E+YGADIRLVA MQYLR+ +VAG+AALVA++FGV+  +G  AI WFP+ +WL   ETL +AIVGPLIARVL IPAGA LVP+V+ I L H   MT+ELP W LA S+A +GWNVGLRFTRPLL++ A  LPR + C
Sbjct:  115 TTALWGISPGAASVMTVMSESYGADIRLVAFMQYLRVVMVAGVAALVAKVFGVTAPHGGDAIAWFPDANWLSFGETLVVAIVGPLIARVLRIPAGAMLVPLVLCIVLAHVGWMTVELPPWALAVSFAFIGWNVGLRFTRPLLLYVARMLPRAIAC 269          
BLAST of mRNA_P-wetherbeei_contig58929.1.1 vs. uniprot
Match: A0A259MLW4_9PROT (Ammonia monooxygenase n=3 Tax=Alphaproteobacteria TaxID=28211 RepID=A0A259MLW4_9PROT)

HSP 1 Score: 193 bits (491), Expect = 3.590e-58
Identity = 106/155 (68.39%), Postives = 123/155 (79.35%), Query Frame = 1
Query:   31 TTALWCISLGAASVMTFMAEAYGADIRLVALMQYLRIFLVAGIAALVARMFGVSTSYGAAAIVWFPEVHWLPLAETLALAIVGPLIARVLNIPAGAFLVPMVVGIGLTHFDLMTIELPTWLLAASYALVGWNVGLRFTRPLLVHAALALPRILVC 495
            TTALW +S GAASVMT+MAEAYGAD+R+VA MQYLR+ +VA +AA VAR FG ++ +   AIVWFPEV W+PL ETLALA VG  +AR L+IPAGAFLVP+V GI LTH   + +ELPTWLLA  YALVGWNVGLRFTR LLVH    LP IL+C
Sbjct:   98 TTALWGVSPGAASVMTYMAEAYGADMRMVAFMQYLRVVMVAAVAAGVARYFGGASQHAPDAIVWFPEVAWVPLLETLALAGVGSWLARRLSIPAGAFLVPLVGGIVLTHMGWLRLELPTWLLAGCYALVGWNVGLRFTRALLVHVLRQLPGILLC 252          
BLAST of mRNA_P-wetherbeei_contig58929.1.1 vs. uniprot
Match: UPI001E605661 (AbrB family transcriptional regulator n=1 Tax=Reyranella sp. MMS21-HV4-11 TaxID=2849149 RepID=UPI001E605661)

HSP 1 Score: 193 bits (490), Expect = 5.810e-58
Identity = 104/155 (67.10%), Postives = 121/155 (78.06%), Query Frame = 1
Query:   31 TTALWCISLGAASVMTFMAEAYGADIRLVALMQYLRIFLVAGIAALVARMFGVSTSYGAAAIVWFPEVHWLPLAETLALAIVGPLIARVLNIPAGAFLVPMVVGIGLTHFDLMTIELPTWLLAASYALVGWNVGLRFTRPLLVHAALALPRILVC 495
            TTALW +S GAASVMT+MAEAYGAD+R+VA MQYLR+ +VA +AA VAR FG +  +   AIVWFPEV WLPL ET+ALA VG  +ARV  IPAGAFL+P+V GI LTH  L+ +ELPTWLLA  YALVGWNVGLRFT  LL+H    LP IL+C
Sbjct:  103 TTALWGVSPGAASVMTYMAEAYGADMRMVAFMQYLRVVMVAVVAAAVARFFGAAPQHAPDAIVWFPEVAWLPLVETVALAGVGSWLARVFRIPAGAFLLPLVGGIVLTHLGLLRLELPTWLLAGCYALVGWNVGLRFTGALLIHVLHQLPGILLC 257          
BLAST of mRNA_P-wetherbeei_contig58929.1.1 vs. uniprot
Match: UPI001E614435 (AbrB family transcriptional regulator n=1 Tax=Reyranella aquatilis TaxID=2035356 RepID=UPI001E614435)

HSP 1 Score: 188 bits (478), Expect = 5.210e-56
Identity = 104/155 (67.10%), Postives = 121/155 (78.06%), Query Frame = 1
Query:   31 TTALWCISLGAASVMTFMAEAYGADIRLVALMQYLRIFLVAGIAALVARMFGVSTSYGAAAIVWFPEVHWLPLAETLALAIVGPLIARVLNIPAGAFLVPMVVGIGLTHFDLMTIELPTWLLAASYALVGWNVGLRFTRPLLVHAALALPRILVC 495
            TTALW +S GAASVMT+MAEAYGAD+R+VA MQYLR+ +VAG+AA VAR FG ++ +   AIVWFP+V WLPL ET+A+A VG  +AR L IPAGAFLVP+V GI LTH   + IELPTWLLA  YALVGWNVGLRFTR LL +    LP IL C
Sbjct:  116 TTALWGVSPGAASVMTYMAEAYGADMRMVAFMQYLRVVMVAGVAAGVARYFGGASQHAPDAIVWFPDVAWLPLLETVAMAGVGSWLARRLGIPAGAFLVPLVGGIVLTHLGWLRIELPTWLLAGCYALVGWNVGLRFTRALLGYVLRQLPGILFC 270          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig58929.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A1F3A934_9PROT8.060e-7987.18Ammonia monooxygenase n=2 Tax=Alphaproteobacteria ... [more]
A0A537NAA1_9PROT6.000e-6673.55AbrB family transcriptional regulator n=1 Tax=Alph... [more]
A0A6A7MAB6_9PROT1.040e-6474.36AbrB family transcriptional regulator (Fragment) n... [more]
A0A512N1Z4_9HYPH1.650e-6475.00Ammonia monooxygenase n=2 Tax=Alphaproteobacteria ... [more]
A0A521LPR4_9HYPH6.350e-6371.61AbrB family transcriptional regulator n=1 Tax=Reyr... [more]
A0A1T4TFR0_9HYPH1.400e-6271.15Uncharacterized protein n=1 Tax=Enhydrobacter aero... [more]
A0A1Q3KS68_9PROT2.660e-5966.45Ammonia monooxygenase n=3 Tax=Alphaproteobacteria ... [more]
A0A259MLW4_9PROT3.590e-5868.39Ammonia monooxygenase n=3 Tax=Alphaproteobacteria ... [more]
UPI001E6056615.810e-5867.10AbrB family transcriptional regulator n=1 Tax=Reyr... [more]
UPI001E6144355.210e-5667.10AbrB family transcriptional regulator n=1 Tax=Reyr... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig58929contigP-wetherbeei_contig58929:2..499 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog1205680.CAKO01000002_gene2881
PFAMsAbrB
Model size498
Max annot lvl204441|Rhodospirillales
KEGG koko:K07120
Hectar predicted targeting categorysignal peptide
Exons1
Evalue1e-61
EggNOG OGsCOG3180@1|root,COG3180@2|Bacteria,1MUFS@1224|Proteobacteria,2TUUX@28211|Alphaproteobacteria,2JPYG@204441|Rhodospirillales
DescriptionTransition state regulatory protein AbrB
Cds size495
COG categoryS
BRITEko00000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186871.5692894-CDS-P-wetherbeei_contig58929:1..4961683186871.5692894-CDS-P-wetherbeei_contig58929:1..496Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig58929 2..496 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186871.5812738-UTR-P-wetherbeei_contig58929:496..4991683186871.5812738-UTR-P-wetherbeei_contig58929:496..499Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig58929 497..499 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig58929.1.1prot_P-wetherbeei_contig58929.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig58929 2..496 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig58929.1.1

>prot_P-wetherbeei_contig58929.1.1 ID=prot_P-wetherbeei_contig58929.1.1|Name=mRNA_P-wetherbeei_contig58929.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=165bp
MMLLIMLLCTTALWCISLGAASVMTFMAEAYGADIRLVALMQYLRIFLVA
GIAALVARMFGVSTSYGAAAIVWFPEVHWLPLAETLALAIVGPLIARVLN
IPAGAFLVPMVVGIGLTHFDLMTIELPTWLLAASYALVGWNVGLRFTRPL
LVHAALALPRILVCT
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mRNA from alignment at P-wetherbeei_contig58929:2..499-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig58929.1.1 ID=mRNA_P-wetherbeei_contig58929.1.1|Name=mRNA_P-wetherbeei_contig58929.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=498bp|location=Sequence derived from alignment at P-wetherbeei_contig58929:2..499- (Phaeothamnion wetherbeei SAG_119_79)
CTGATGATGCTTCTAATTATGCTTCTCTGCACCACTGCGCTGTGGTGCAT CAGCCTGGGCGCCGCCTCGGTCATGACTTTCATGGCCGAGGCCTACGGCG CCGACATCAGGCTGGTGGCGCTGATGCAGTATCTTCGTATCTTCCTGGTG GCGGGGATCGCGGCCCTTGTGGCGCGGATGTTTGGCGTCAGTACGTCCTA TGGTGCGGCGGCAATCGTGTGGTTTCCCGAGGTCCACTGGCTGCCGCTGG CTGAGACGCTGGCGCTCGCCATCGTGGGACCTCTGATCGCGCGCGTCCTC AACATTCCCGCCGGCGCCTTCCTGGTGCCGATGGTCGTGGGCATCGGCCT CACGCATTTCGACCTTATGACGATCGAGCTGCCGACCTGGCTGCTGGCCG CCAGCTACGCGCTGGTCGGCTGGAACGTCGGGCTGCGCTTCACGCGGCCG TTGCTCGTCCATGCCGCGCTGGCGCTGCCGCGCATCCTCGTCTGCACC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig58929:2..499-

>mRNA_P-wetherbeei_contig58929.1.1 ID=mRNA_P-wetherbeei_contig58929.1.1|Name=mRNA_P-wetherbeei_contig58929.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=495bp|location=Sequence derived from alignment at P-wetherbeei_contig58929:2..499- (Phaeothamnion wetherbeei SAG_119_79)
ATGATGCTTCTAATTATGCTTCTCTGCACCACTGCGCTGTGGTGCATCAG
CCTGGGCGCCGCCTCGGTCATGACTTTCATGGCCGAGGCCTACGGCGCCG
ACATCAGGCTGGTGGCGCTGATGCAGTATCTTCGTATCTTCCTGGTGGCG
GGGATCGCGGCCCTTGTGGCGCGGATGTTTGGCGTCAGTACGTCCTATGG
TGCGGCGGCAATCGTGTGGTTTCCCGAGGTCCACTGGCTGCCGCTGGCTG
AGACGCTGGCGCTCGCCATCGTGGGACCTCTGATCGCGCGCGTCCTCAAC
ATTCCCGCCGGCGCCTTCCTGGTGCCGATGGTCGTGGGCATCGGCCTCAC
GCATTTCGACCTTATGACGATCGAGCTGCCGACCTGGCTGCTGGCCGCCA
GCTACGCGCTGGTCGGCTGGAACGTCGGGCTGCGCTTCACGCGGCCGTTG
CTCGTCCATGCCGCGCTGGCGCTGCCGCGCATCCTCGTCTGCACC
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