mRNA_P-wetherbeei_contig58927.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig58927.1.1
Unique NamemRNA_P-wetherbeei_contig58927.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig58927.1.1 vs. uniprot
Match: A0A455UZ80_9GAMM (DnaA_N domain-containing protein n=1 Tax=Halomonas axialensis TaxID=115555 RepID=A0A455UZ80_9GAMM)

HSP 1 Score: 93.6 bits (231), Expect = 1.390e-22
Identity = 48/86 (55.81%), Postives = 60/86 (69.77%), Query Frame = 1
Query:    1 SIWQQCLIQLERELTAQQFNTWIRPLQAIELEQG-LEILAPNRFVLDWIRDKYGSRIRAILDQLAGASDLKVSMGIGSVAAAKPEP 255
            ++WQQCL  L+ EL +QQFNTWIRPLQA E E   L +LAPNRFV DW+ DKY  RI  ++ +LA +   KVS+ +GS  AA P P
Sbjct:    4 ALWQQCLDYLQDELNSQQFNTWIRPLQAEEGESNELRLLAPNRFVRDWVSDKYAKRISELMRELAPSKPPKVSLTVGSRRAAAPAP 89          
BLAST of mRNA_P-wetherbeei_contig58927.1.1 vs. uniprot
Match: A0A523P3D0_9PROT (Chromosomal replication initiator protein DnaA n=1 Tax=Proteobacteria bacterium TaxID=1977087 RepID=A0A523P3D0_9PROT)

HSP 1 Score: 98.2 bits (243), Expect = 3.120e-22
Identity = 43/77 (55.84%), Postives = 58/77 (75.32%), Query Frame = 1
Query:    1 SIWQQCLIQLERELTAQQFNTWIRPLQAIELEQGLEILAPNRFVLDWIRDKYGSRIRAILDQLAGASDLKVSMGIGS 231
            ++WQ+CL  LE E+TAQQ+NTWIRPL  IE    LE+LAPNRFVLDWIRDKY +RI  +L +L+    + +S+ +G+
Sbjct:    4 AVWQKCLKHLEAEMTAQQYNTWIRPLHVIEKSNELELLAPNRFVLDWIRDKYSARIETLLAELSPNQPVSISLSVGT 80          
BLAST of mRNA_P-wetherbeei_contig58927.1.1 vs. uniprot
Match: A0A352KHY1_9GAMM (Chromosomal replication initiator protein DnaA (Fragment) n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A352KHY1_9GAMM)

HSP 1 Score: 92.4 bits (228), Expect = 1.330e-21
Identity = 43/77 (55.84%), Postives = 57/77 (74.03%), Query Frame = 1
Query:    1 SIWQQCLIQLERELTAQQFNTWIRPLQAIELEQGLEILAPNRFVLDWIRDKYGSRIRAILDQLAGASDLKVSMGIGS 231
            ++W QCL +LEREL++QQFNTWIRPLQ +E +  L++ APNRFVLDWI D+Y  RI  ILD +   +  K+S  +GS
Sbjct:    4 NVWHQCLQRLERELSSQQFNTWIRPLQVVEDDGDLKLYAPNRFVLDWINDQYLERITEILDFVTNGAPPKLSAEVGS 80          
BLAST of mRNA_P-wetherbeei_contig58927.1.1 vs. uniprot
Match: W1N7W2_9GAMM (Chromosomal replication initiator protein DnaA n=180 Tax=root TaxID=1 RepID=W1N7W2_9GAMM)

HSP 1 Score: 94.7 bits (234), Expect = 6.830e-21
Identity = 47/85 (55.29%), Postives = 59/85 (69.41%), Query Frame = 1
Query:    1 SIWQQCLIQLERELTAQQFNTWIRPLQAIELEQGLEILAPNRFVLDWIRDKYGSRIRAILDQLAGASDLKVSMGIGSVAAAKPEP 255
            ++WQQCL  L+ EL++QQFNTWIRPLQA E    L +LAPNRFV DW+ DKY  RI  ++ +LA A   KV + +GS  AA P P
Sbjct:    4 ALWQQCLETLQDELSSQQFNTWIRPLQAEEEANQLRLLAPNRFVRDWVNDKYAKRISELMRELAPAKPPKVLLVVGSRRAAAPAP 88          
BLAST of mRNA_P-wetherbeei_contig58927.1.1 vs. uniprot
Match: A0A1I4QZR9_ECTMO (Chromosomal replication initiator protein DnaA n=3 Tax=Ectothiorhodospira mobilis TaxID=195064 RepID=A0A1I4QZR9_ECTMO)

HSP 1 Score: 93.2 bits (230), Expect = 2.190e-20
Identity = 41/77 (53.25%), Postives = 58/77 (75.32%), Query Frame = 1
Query:    1 SIWQQCLIQLERELTAQQFNTWIRPLQAIELEQGLEILAPNRFVLDWIRDKYGSRIRAILDQLAGASDLKVSMGIGS 231
            ++WQQC+ +LE EL+ QQ NTWIRPL A+E E  L +LAPNRFVLDW++D +  RI  ++ + AG  D++VS+ +GS
Sbjct:    5 ALWQQCVARLESELSEQQLNTWIRPLHAVEEEGVLRLLAPNRFVLDWVKDHFFQRIGQVVTETAGHDDVRVSLEVGS 81          
BLAST of mRNA_P-wetherbeei_contig58927.1.1 vs. uniprot
Match: A0A7C5TRT1_9GAMM (Chromosomal replication initiator protein DnaA n=2 Tax=Chromatiales bacterium TaxID=2026725 RepID=A0A7C5TRT1_9GAMM)

HSP 1 Score: 92.8 bits (229), Expect = 3.730e-20
Identity = 45/82 (54.88%), Postives = 60/82 (73.17%), Query Frame = 1
Query:    4 IWQQCLIQLERELTAQQFNTWIRPLQAIELEQGLEILAPNRFVLDWIRDKYGSRIRAILDQLAGASDLKVSMGIGSVAAAKP 249
            +W+ C+ +LE ELT QQFNTWIRPLQA+E    L +LAPNRFVLDW+RD +  RI  I+DQ  G  +L++ + +GS A+A P
Sbjct:  116 VWKHCVSRLEGELTEQQFNTWIRPLQAVENGSTLRLLAPNRFVLDWVRDHFLERIAEIVDQ-EGRGNLRLCLEVGSSASATP 196          
BLAST of mRNA_P-wetherbeei_contig58927.1.1 vs. uniprot
Match: A0A1S9D124_9GAMM (Chromosomal replication initiator protein DnaA n=2 Tax=Bacteria TaxID=2 RepID=A0A1S9D124_9GAMM)

HSP 1 Score: 92.4 bits (228), Expect = 3.850e-20
Identity = 43/77 (55.84%), Postives = 58/77 (75.32%), Query Frame = 1
Query:    1 SIWQQCLIQLERELTAQQFNTWIRPLQAIELEQGLEILAPNRFVLDWIRDKYGSRIRAILDQLAGASDLKVSMGIGS 231
            S+WQ+CL +LE EL  QQF+TWIRPL A+E E+ L++LAPNRFVL+WI+DKY  RI  ++  LA    +KV + +GS
Sbjct:    4 SLWQRCLAKLECELPPQQFSTWIRPLHAVEEERNLKLLAPNRFVLEWIKDKYLERIVDLVTHLAEVEGVKVFLSVGS 80          
BLAST of mRNA_P-wetherbeei_contig58927.1.1 vs. uniprot
Match: A0A836V4Z2_9GAMM (Chromosomal replication initiator protein DnaA n=2 Tax=Chromatiaceae bacterium TaxID=2049432 RepID=A0A836V4Z2_9GAMM)

HSP 1 Score: 92.4 bits (228), Expect = 3.870e-20
Identity = 42/75 (56.00%), Postives = 59/75 (78.67%), Query Frame = 1
Query:    1 SIWQQCLIQLERELTAQQFNTWIRPLQAIELEQGLEILAPNRFVLDWIRDKYGSRIRAILDQLA-GASDLKVSMG 222
            S+W+QC+ +LE +L +QQFNTWIRPLQAIE ++ + +LAPNRFVLDW+RD Y   I ++LD+L   A +LK+ +G
Sbjct:    4 SLWKQCISRLEGDLPSQQFNTWIRPLQAIETDREVTLLAPNRFVLDWVRDNYVGHISSLLDELCDSAPELKLQIG 78          
BLAST of mRNA_P-wetherbeei_contig58927.1.1 vs. uniprot
Match: A0A3T1DG03_9GAMM (Uncharacterized protein n=2 Tax=Halomonas TaxID=2745 RepID=A0A3T1DG03_9GAMM)

HSP 1 Score: 90.5 bits (223), Expect = 3.920e-20
Identity = 45/78 (57.69%), Postives = 56/78 (71.79%), Query Frame = 1
Query:    1 SIWQQCLIQLERELTAQQFNTWIRPLQAIELEQG-LEILAPNRFVLDWIRDKYGSRIRAILDQLAGASDLKVSMGIGS 231
            ++WQQCL  L+ EL +QQFNTWIRPLQA E E   L +LAPNRFV DW+ DKY  RI  ++ +LA A   KVS+ +GS
Sbjct:    4 TLWQQCLDNLQDELNSQQFNTWIRPLQAEEGESNELRLLAPNRFVRDWVSDKYAKRISELMRELAPAKPPKVSLTVGS 81          
BLAST of mRNA_P-wetherbeei_contig58927.1.1 vs. uniprot
Match: A0A3M1DI11_9GAMM (Chromosomal replication initiator protein DnaA n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A3M1DI11_9GAMM)

HSP 1 Score: 92.4 bits (228), Expect = 3.950e-20
Identity = 42/82 (51.22%), Postives = 59/82 (71.95%), Query Frame = 1
Query:    4 IWQQCLIQLERELTAQQFNTWIRPLQAIELEQGLEILAPNRFVLDWIRDKYGSRIRAILDQLAGASDLKVSMGIGSVAAAKP 249
            +W++CL +LE ELTAQQFNTWIRPLQA      L++LAPNRFVLDW+R++Y  RI+ +L +L  ++  ++   +GS A   P
Sbjct:    5 LWERCLNRLEHELTAQQFNTWIRPLQADCGNGTLKLLAPNRFVLDWVRERYAERIQQLLSELDASTQARLEFAVGSAAPVPP 86          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig58927.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A455UZ80_9GAMM1.390e-2255.81DnaA_N domain-containing protein n=1 Tax=Halomonas... [more]
A0A523P3D0_9PROT3.120e-2255.84Chromosomal replication initiator protein DnaA n=1... [more]
A0A352KHY1_9GAMM1.330e-2155.84Chromosomal replication initiator protein DnaA (Fr... [more]
W1N7W2_9GAMM6.830e-2155.29Chromosomal replication initiator protein DnaA n=1... [more]
A0A1I4QZR9_ECTMO2.190e-2053.25Chromosomal replication initiator protein DnaA n=3... [more]
A0A7C5TRT1_9GAMM3.730e-2054.88Chromosomal replication initiator protein DnaA n=2... [more]
A0A1S9D124_9GAMM3.850e-2055.84Chromosomal replication initiator protein DnaA n=2... [more]
A0A836V4Z2_9GAMM3.870e-2056.00Chromosomal replication initiator protein DnaA n=2... [more]
A0A3T1DG03_9GAMM3.920e-2057.69Uncharacterized protein n=2 Tax=Halomonas TaxID=27... [more]
A0A3M1DI11_9GAMM3.950e-2051.22Chromosomal replication initiator protein DnaA n=1... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig58927contigP-wetherbeei_contig58927:201..455 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog1178482.BJB45_20595
Preferred namednaA
PFAMsBac_DnaA,Bac_DnaA_C,DnaA_N
Model size255
Max annot lvl135619|Oceanospirillales
KEGG koko:K02313
KEGG Pathwayko02020,ko04112,map02020,map04112
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.12e-21
EggNOG OGsCOG0593@1|root,COG0593@2|Bacteria,1MU5H@1224|Proteobacteria,1RNHP@1236|Gammaproteobacteria,1XHHN@135619|Oceanospirillales
Descriptionit binds specifically double-stranded DNA at a 9 bp consensus (dnaA box) 5'-TTATC CA A CA A-3'. DnaA binds to ATP and to acidic phospholipids
Cds size255
COG categoryL
BRITEko00000,ko00001,ko03032,ko03036
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186871.5386064-CDS-P-wetherbeei_contig58927:200..4551683186871.5386064-CDS-P-wetherbeei_contig58927:200..455Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig58927 201..455 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig58927.1.1prot_P-wetherbeei_contig58927.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig58927 201..455 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig58927.1.1

>prot_P-wetherbeei_contig58927.1.1 ID=prot_P-wetherbeei_contig58927.1.1|Name=mRNA_P-wetherbeei_contig58927.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=85bp
SIWQQCLIQLERELTAQQFNTWIRPLQAIELEQGLEILAPNRFVLDWIRD
KYGSRIRAILDQLAGASDLKVSMGIGSVAAAKPEP
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mRNA from alignment at P-wetherbeei_contig58927:201..455+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig58927.1.1 ID=mRNA_P-wetherbeei_contig58927.1.1|Name=mRNA_P-wetherbeei_contig58927.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=255bp|location=Sequence derived from alignment at P-wetherbeei_contig58927:201..455+ (Phaeothamnion wetherbeei SAG_119_79)
TCGATTTGGCAGCAGTGCCTGATTCAGCTTGAAAGAGAGCTTACAGCCCA GCAGTTCAATACCTGGATTCGTCCCTTGCAGGCTATCGAGCTTGAACAGG GACTGGAGATCCTTGCGCCGAATCGCTTTGTGCTCGATTGGATTCGCGAC AAATATGGCAGCCGTATTCGCGCAATCCTGGACCAGTTGGCTGGCGCCAG TGATCTCAAGGTTTCGATGGGTATCGGGAGCGTTGCTGCTGCCAAACCCG AGCCT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig58927:201..455+

>mRNA_P-wetherbeei_contig58927.1.1 ID=mRNA_P-wetherbeei_contig58927.1.1|Name=mRNA_P-wetherbeei_contig58927.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=255bp|location=Sequence derived from alignment at P-wetherbeei_contig58927:201..455+ (Phaeothamnion wetherbeei SAG_119_79)
TCGATTTGGCAGCAGTGCCTGATTCAGCTTGAAAGAGAGCTTACAGCCCA
GCAGTTCAATACCTGGATTCGTCCCTTGCAGGCTATCGAGCTTGAACAGG
GACTGGAGATCCTTGCGCCGAATCGCTTTGTGCTCGATTGGATTCGCGAC
AAATATGGCAGCCGTATTCGCGCAATCCTGGACCAGTTGGCTGGCGCCAG
TGATCTCAAGGTTTCGATGGGTATCGGGAGCGTTGCTGCTGCCAAACCCG
AGCCT
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