mRNA_P-wetherbeei_contig5892.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig5892.1.1
Unique NamemRNA_P-wetherbeei_contig5892.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig5892.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig5892contigP-wetherbeei_contig5892:2087..3623 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size639
Hectar predicted targeting categoryother localisation
Exons4
Cds size609
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186871.3856838-CDS-P-wetherbeei_contig5892:2086..22391683186871.3856838-CDS-P-wetherbeei_contig5892:2086..2239Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5892 2087..2239 -
1683186871.405418-CDS-P-wetherbeei_contig5892:2483..25971683186871.405418-CDS-P-wetherbeei_contig5892:2483..2597Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5892 2484..2597 -
1683186871.417278-CDS-P-wetherbeei_contig5892:3024..32321683186871.417278-CDS-P-wetherbeei_contig5892:3024..3232Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5892 3025..3232 -
1683186871.4266562-CDS-P-wetherbeei_contig5892:3459..35931683186871.4266562-CDS-P-wetherbeei_contig5892:3459..3593Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5892 3460..3593 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186871.4364808-UTR-P-wetherbeei_contig5892:3593..36231683186871.4364808-UTR-P-wetherbeei_contig5892:3593..3623Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig5892 3594..3623 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig5892.1.1prot_P-wetherbeei_contig5892.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig5892 2087..3593 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig5892.1.1

>prot_P-wetherbeei_contig5892.1.1 ID=prot_P-wetherbeei_contig5892.1.1|Name=mRNA_P-wetherbeei_contig5892.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=203bp
MVNISAPRCDHEGCGRYPTWNLPGQRRGKWCADHAPNEARVAISSRCEVE
GCPKGAAYNVPGSKGTRFCASHKTEGMVRRFKDEPCQEPGCNTTPRYALP
TVTKATHCAIHKKEGMRNIKDAHCQEPNCYTWPSFNKSGETKGLYCAAHK
KEDMVNVKSRRCQQEGCNTVPSYDVEGAKTPRFCTSHRREGMVCVVTRRS
KAQ
back to top

mRNA from alignment at P-wetherbeei_contig5892:2087..3623-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig5892.1.1 ID=mRNA_P-wetherbeei_contig5892.1.1|Name=mRNA_P-wetherbeei_contig5892.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1537bp|location=Sequence derived from alignment at P-wetherbeei_contig5892:2087..3623- (Phaeothamnion wetherbeei SAG_119_79)
AAGTTCTGCTCGGCGCACAAGGAGAAGGGGATGGTCAACATTTCTGCGCC
GCGCTGCGACCACGAGGGCTGCGGTCGTTACCCGACCTGGAACCTGCCGG
GACAGCGCCGCGGCAAGTGGTGCGCCGACCACGCGCCGAACGAGGCGCGC
GTTGCCATCTCTAGGTGCGTGCCGGCCTTGTTGCCGGTGTTGTGTTTGTG
TTCTTCCTTTTTGCGTAGCTGGAACTAGATGGGGGTGCTAGGTATTGAGG
GCTGTTTCTCATGGAACTTCATGCCTCTTTGTCAAACTAGGTTCTTGTCG
TCTCAATTCCATTTCTCATTTGCTTTCCACCTGTCTCCCGTCGCAACACC
GTACCGCACTGCACCACGTCACGCCTGTCTCCCGTTGACAGCCGGTGCGA
GGTGGAGGGGTGCCCGAAGGGCGCGGCGTACAACGTGCCGGGGTCGAAAG
GCACGCGCTTCTGCGCGTCGCATAAGACGGAGGGTATGGTGCGGCGCTTC
AAGGACGAGCCGTGCCAGGAGCCCGGCTGCAACACGACGCCGCGCTACGC
CCTCCCCACCGTCACCAAGGCTACCCACTGCGCCATCCACAAGAAGGAGG
TGAGATGACAGATAAATGTCGCCTTGACCAGCTGTGCTCTGACTGCACCC
GTGTCATTTGTTTGCCGCGGTGCGCCGCGGCGACAAGCTGTGGTTACGGT
GCCTCTGCCGTTTGGCTGGTTGATTTGGAATTGTTTAGACTTTTGGGGGC
GTTTTTGTGCTCATGCTGCTGGGAGGTCGTGAAGCACTGTTTCGTATCAC
GCTGCGGATTAGCACTGTGGCATGGCAGCCCTGCCGTTCGACTTCAGCCG
AGCACTGCCAATACTGAAGAAAGCAGCTAGAGGTTCTTGAAGGAAGAGCT
TTAAACCCTTTCTTCCTTCTTACTCTCTGATCGCTTTTCCTTTCTTCTCG
TACCTTCTTTACTGAATCTAGTCTTCACCTCCCCTTTTCCTCGGCCATCT
TCTTGGTGCGTCAAATCTGCTGTTAGGGCATGCGAAACATCAAAGACGCG
CACTGTCAGGAGCCGAATTGCTACACGTGGCCGTCCTTCAACAAGTCCGG
CGAGACTAAGGGTCTCTACTGCGCCGCCCACAAGAAGGAGGTAAGGACAG
GGCACCTTTCCTTTCTCCCTTTTGCCGCACGGTAAACGCATTTACTTTCC
ATGCTTTTGCGAGCACCCGAAGGATATGGCTTGGACCAAGAAACATGGTT
TGGTTTGTGCTGCTGGCTGCCTTGGACGGACGGATAGGTGCCGGCCCTAG
TGTTATGCTGCACCGAAACGTTGTACTGATGGCAGGCCGACCCGCCGCAC
GCGCCGCCGTGCCGCGCCTCGCCTCCCGCTTCAGGACATGGTGAACGTCA
AGAGCCGGCGATGCCAGCAGGAGGGCTGCAATACCGTGCCAAGCTACGAC
GTCGAGGGCGCTAAGACGCCGCGCTTCTGCACCTCCCATCGTCGCGAGGG
CATGGTCTGCGTCGTCACGCGCCGCTCCAAGGCGCAG
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig5892:2087..3623-

>mRNA_P-wetherbeei_contig5892.1.1 ID=mRNA_P-wetherbeei_contig5892.1.1|Name=mRNA_P-wetherbeei_contig5892.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=609bp|location=Sequence derived from alignment at P-wetherbeei_contig5892:2087..3623- (Phaeothamnion wetherbeei SAG_119_79)
ATGGTCAACATTTCTGCGCCGCGCTGCGACCACGAGGGCTGCGGTCGTTA
CCCGACCTGGAACCTGCCGGGACAGCGCCGCGGCAAGTGGTGCGCCGACC
ACGCGCCGAACGAGGCGCGCGTTGCCATCTCTAGCCGGTGCGAGGTGGAG
GGGTGCCCGAAGGGCGCGGCGTACAACGTGCCGGGGTCGAAAGGCACGCG
CTTCTGCGCGTCGCATAAGACGGAGGGTATGGTGCGGCGCTTCAAGGACG
AGCCGTGCCAGGAGCCCGGCTGCAACACGACGCCGCGCTACGCCCTCCCC
ACCGTCACCAAGGCTACCCACTGCGCCATCCACAAGAAGGAGGGCATGCG
AAACATCAAAGACGCGCACTGTCAGGAGCCGAATTGCTACACGTGGCCGT
CCTTCAACAAGTCCGGCGAGACTAAGGGTCTCTACTGCGCCGCCCACAAG
AAGGAGGACATGGTGAACGTCAAGAGCCGGCGATGCCAGCAGGAGGGCTG
CAATACCGTGCCAAGCTACGACGTCGAGGGCGCTAAGACGCCGCGCTTCT
GCACCTCCCATCGTCGCGAGGGCATGGTCTGCGTCGTCACGCGCCGCTCC
AAGGCGCAG
back to top