mRNA_P-wetherbeei_contig58911.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig58911.1.1
Unique NamemRNA_P-wetherbeei_contig58911.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig58911.1.1 vs. uniprot
Match: A3WR59_9BRAD (DNA polymerase III gamma and tau subunits n=2 Tax=Nitrobacter sp. Nb-311A TaxID=314253 RepID=A3WR59_9BRAD)

HSP 1 Score: 56.6 bits (135), Expect = 4.430e-7
Identity = 32/107 (29.91%), Postives = 54/107 (50.47%), Query Frame = 1 
Query:    1 LEPSDIREIVNRASFFVQQYGRLFNFSFQIYAHDGANEQRRFKAD-VHRFVEAIAKRCQRDIVGFFAIYTFELDENGVVCRLIGYAPVEIAPHIEHWWNAWRNDVND 318
            L  +D+REIVNRASFF+Q +GR+ N +F ++    A    R   + + +F E +   C        ++  +E D +GV  R++ + P  + P+       W N  N+
Sbjct:  280 LSRADVREIVNRASFFIQHHGRMMNAAFTVFPGWRAKSSERTAIEAIRQFREKLDCLCSDAGEPHASMTVYERDLDGVFGRIVAHVPQIVDPNFATVLADWCNGFNE 386
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig58911.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A3WR59_9BRAD4.430e-729.91DNA polymerase III gamma and tau subunits n=2 Tax=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig58911contigP-wetherbeei_contig58911:184..501 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size318
Hectar predicted targeting categoryother localisation
Exons1
Cds size318
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186871.3528874-CDS-P-wetherbeei_contig58911:183..5011683186871.3528874-CDS-P-wetherbeei_contig58911:183..501Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig58911 184..501 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig58911.1.1prot_P-wetherbeei_contig58911.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig58911 184..501 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig58911.1.1

>prot_P-wetherbeei_contig58911.1.1 ID=prot_P-wetherbeei_contig58911.1.1|Name=mRNA_P-wetherbeei_contig58911.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=106bp
LEPSDIREIVNRASFFVQQYGRLFNFSFQIYAHDGANEQRRFKADVHRFV
EAIAKRCQRDIVGFFAIYTFELDENGVVCRLIGYAPVEIAPHIEHWWNAW
RNDVND
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mRNA from alignment at P-wetherbeei_contig58911:184..501+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig58911.1.1 ID=mRNA_P-wetherbeei_contig58911.1.1|Name=mRNA_P-wetherbeei_contig58911.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=318bp|location=Sequence derived from alignment at P-wetherbeei_contig58911:184..501+ (Phaeothamnion wetherbeei SAG_119_79)
CTTGAGCCGAGTGATATCCGCGAGATTGTCAATCGCGCCAGTTTCTTCGT
CCAGCAATACGGCCGTCTCTTCAATTTTTCATTCCAAATTTACGCGCATG
ACGGAGCAAATGAACAGCGCCGCTTCAAAGCAGATGTACATAGATTTGTG
GAGGCTATCGCGAAGCGATGTCAGCGTGACATTGTCGGATTTTTCGCGAT
CTATACATTTGAGCTAGATGAGAATGGAGTCGTTTGTCGCCTCATCGGCT
ACGCTCCCGTGGAAATCGCTCCACACATCGAACATTGGTGGAACGCTTGG
CGAAACGACGTAAATGAT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig58911:184..501+

>mRNA_P-wetherbeei_contig58911.1.1 ID=mRNA_P-wetherbeei_contig58911.1.1|Name=mRNA_P-wetherbeei_contig58911.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=318bp|location=Sequence derived from alignment at P-wetherbeei_contig58911:184..501+ (Phaeothamnion wetherbeei SAG_119_79)
CTTGAGCCGAGTGATATCCGCGAGATTGTCAATCGCGCCAGTTTCTTCGT
CCAGCAATACGGCCGTCTCTTCAATTTTTCATTCCAAATTTACGCGCATG
ACGGAGCAAATGAACAGCGCCGCTTCAAAGCAGATGTACATAGATTTGTG
GAGGCTATCGCGAAGCGATGTCAGCGTGACATTGTCGGATTTTTCGCGAT
CTATACATTTGAGCTAGATGAGAATGGAGTCGTTTGTCGCCTCATCGGCT
ACGCTCCCGTGGAAATCGCTCCACACATCGAACATTGGTGGAACGCTTGG
CGAAACGACGTAAATGAT
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