mRNA_P-wetherbeei_contig58860.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig58860.1.1
Unique NamemRNA_P-wetherbeei_contig58860.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig58860.1.1 vs. uniprot
Match: A0A5C8BA54_9BURK (EVE domain-containing protein (Fragment) n=1 Tax=Burkholderiaceae bacterium TaxID=2030806 RepID=A0A5C8BA54_9BURK)

HSP 1 Score: 71.6 bits (174), Expect = 2.380e-14
Identity = 33/40 (82.50%), Postives = 36/40 (90.00%), Query Frame = 2 
Query:  239 NWIAVASAEHVGIGRAQGFMQVCHGKAAPLRRVLAGSRVV 358
            +WIAVASAEHV IGRAQGFMQVCHGKAAPLRR+ AG  V+
Sbjct:    4 HWIAVASAEHVAIGRAQGFMQVCHGKAAPLRRLSAGDTVI 43
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BLAST of mRNA_P-wetherbeei_contig58860.1.1 vs. uniprot
Match: UPI0003F97328 (EVE domain-containing protein n=1 Tax=Ottowia thiooxydans TaxID=219182 RepID=UPI0003F97328)

HSP 1 Score: 73.6 bits (179), Expect = 3.790e-14
Identity = 35/49 (71.43%), Postives = 40/49 (81.63%), Query Frame = 2 
Query:  209 SREAVMGETANWIAVASAEHVGIGRAQGFMQVCHGKAAPLRRVLAGSRV 355
            S E++   + NWIAVASAEHV +GRAQGFMQVCHGKAAPLRR+  G RV
Sbjct:    2 SLESLTRSSQNWIAVASAEHVRLGRAQGFMQVCHGKAAPLRRLQEGDRV 50
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BLAST of mRNA_P-wetherbeei_contig58860.1.1 vs. uniprot
Match: UPI001D934F0C (EVE domain-containing protein n=1 Tax=Azospirillum rugosum TaxID=416170 RepID=UPI001D934F0C)

HSP 1 Score: 70.9 bits (172), Expect = 4.110e-13
Identity = 35/45 (77.78%), Postives = 38/45 (84.44%), Query Frame = 2 
Query:  221 VMGETANWIAVASAEHVGIGRAQGFMQVCHGKAAPLRRVLAGSRV 355
            +MG + NWIAVASAEHV IGRA GFMQVCHGKAAPLRR+  G RV
Sbjct:    5 IMG-SRNWIAVASAEHVRIGRAGGFMQVCHGKAAPLRRIRPGDRV 48
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BLAST of mRNA_P-wetherbeei_contig58860.1.1 vs. uniprot
Match: UPI001A9617DE (EVE domain-containing protein n=1 Tax=Azospirillum sp. SYSU D00513 TaxID=2812561 RepID=UPI001A9617DE)

HSP 1 Score: 70.5 bits (171), Expect = 5.180e-13
Identity = 31/40 (77.50%), Postives = 35/40 (87.50%), Query Frame = 2 
Query:  239 NWIAVASAEHVGIGRAQGFMQVCHGKAAPLRRVLAGSRVV 358
            NWIAVASAEHV +GRA GFMQVCHGK APLRR+ +G R+V
Sbjct:    5 NWIAVASAEHVRLGRASGFMQVCHGKGAPLRRIKSGDRIV 44
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BLAST of mRNA_P-wetherbeei_contig58860.1.1 vs. uniprot
Match: A0A840L1T8_9BURK (UPF0310 protein HNP55_000276 n=1 Tax=Paucibacter oligotrophus TaxID=1769250 RepID=A0A840L1T8_9BURK)

HSP 1 Score: 70.9 bits (172), Expect = 5.220e-13
Identity = 32/40 (80.00%), Postives = 36/40 (90.00%), Query Frame = 2 
Query:  236 ANWIAVASAEHVGIGRAQGFMQVCHGKAAPLRRVLAGSRV 355
            +NW+AVASAEHV +GRAQGFMQVCHGKAAPLRR+  G RV
Sbjct:    6 SNWLAVASAEHVRLGRAQGFMQVCHGKAAPLRRLRPGDRV 45
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BLAST of mRNA_P-wetherbeei_contig58860.1.1 vs. uniprot
Match: A0A0U2USF2_9BURK (UPF0310 protein AT984_10890 n=2 Tax=Paucibacter sp. KCTC 42545 TaxID=1768242 RepID=A0A0U2USF2_9BURK)

HSP 1 Score: 70.9 bits (172), Expect = 5.910e-13
Identity = 33/38 (86.84%), Postives = 35/38 (92.11%), Query Frame = 2 
Query:  242 WIAVASAEHVGIGRAQGFMQVCHGKAAPLRRVLAGSRV 355
            WIAVASAEHV +GRAQGFMQVCHGKAAPLRR+ AG RV
Sbjct:   15 WIAVASAEHVRLGRAQGFMQVCHGKAAPLRRLRAGDRV 52
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BLAST of mRNA_P-wetherbeei_contig58860.1.1 vs. uniprot
Match: A0A1A9HJP0_9BURK (UPF0310 protein ABE85_05180 n=1 Tax=Mitsuaria sp. 7 TaxID=1658665 RepID=A0A1A9HJP0_9BURK)

HSP 1 Score: 70.5 bits (171), Expect = 6.190e-13
Identity = 34/47 (72.34%), Postives = 38/47 (80.85%), Query Frame = 2 
Query:  215 EAVMGETANWIAVASAEHVGIGRAQGFMQVCHGKAAPLRRVLAGSRV 355
            EAV+ +  +WIAVASAEHV  GRA+GFMQVCHGK APLRRV  G RV
Sbjct:    7 EAVVRQPRSWIAVASAEHVRRGRAEGFMQVCHGKVAPLRRVRPGDRV 53
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BLAST of mRNA_P-wetherbeei_contig58860.1.1 vs. uniprot
Match: G0JL73_9PROT (UPF0310 protein Acife_1481 n=6 Tax=Acidithiobacillus TaxID=119977 RepID=G0JL73_9PROT)

HSP 1 Score: 70.1 bits (170), Expect = 7.150e-13
Identity = 32/39 (82.05%), Postives = 34/39 (87.18%), Query Frame = 2 
Query:  239 NWIAVASAEHVGIGRAQGFMQVCHGKAAPLRRVLAGSRV 355
            NW+AVASAEHV IGRA GFMQVCHGKAAPLRR+  G RV
Sbjct:    4 NWVAVASAEHVRIGRAAGFMQVCHGKAAPLRRIKPGDRV 42
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BLAST of mRNA_P-wetherbeei_contig58860.1.1 vs. uniprot
Match: UPI00110E0950 (EVE domain-containing protein n=1 Tax=unclassified Bradyrhizobium TaxID=2631580 RepID=UPI00110E0950)

HSP 1 Score: 70.1 bits (170), Expect = 7.150e-13
Identity = 32/42 (76.19%), Postives = 36/42 (85.71%), Query Frame = 2 
Query:  233 TANWIAVASAEHVGIGRAQGFMQVCHGKAAPLRRVLAGSRVV 358
            T NW+AVASAEHV IGR++GFMQVCHGKAAPLRR+  G  VV
Sbjct:    2 TRNWVAVASAEHVRIGRSKGFMQVCHGKAAPLRRIQPGDGVV 43
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BLAST of mRNA_P-wetherbeei_contig58860.1.1 vs. uniprot
Match: A0A1Y6BBZ9_9NEIS (UPF0310 protein SAMN02745746_00748 n=1 Tax=Pseudogulbenkiania subflava DSM 22618 TaxID=1123014 RepID=A0A1Y6BBZ9_9NEIS)

HSP 1 Score: 69.7 bits (169), Expect = 1.010e-12
Identity = 33/40 (82.50%), Postives = 35/40 (87.50%), Query Frame = 2 
Query:  239 NWIAVASAEHVGIGRAQGFMQVCHGKAAPLRRVLAGSRVV 358
            NWIAVASAEHV  GRA+GFMQVCHGKAAPLRR+  G RVV
Sbjct:    4 NWIAVASAEHVRHGRAEGFMQVCHGKAAPLRRLRPGDRVV 43
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig58860.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A5C8BA54_9BURK2.380e-1482.50EVE domain-containing protein (Fragment) n=1 Tax=B... [more]
UPI0003F973283.790e-1471.43EVE domain-containing protein n=1 Tax=Ottowia thio... [more]
UPI001D934F0C4.110e-1377.78EVE domain-containing protein n=1 Tax=Azospirillum... [more]
UPI001A9617DE5.180e-1377.50EVE domain-containing protein n=1 Tax=Azospirillum... [more]
A0A840L1T8_9BURK5.220e-1380.00UPF0310 protein HNP55_000276 n=1 Tax=Paucibacter o... [more]
A0A0U2USF2_9BURK5.910e-1386.84UPF0310 protein AT984_10890 n=2 Tax=Paucibacter sp... [more]
A0A1A9HJP0_9BURK6.190e-1372.34UPF0310 protein ABE85_05180 n=1 Tax=Mitsuaria sp. ... [more]
G0JL73_9PROT7.150e-1382.05UPF0310 protein Acife_1481 n=6 Tax=Acidithiobacill... [more]
UPI00110E09507.150e-1376.19EVE domain-containing protein n=1 Tax=unclassified... [more]
A0A1Y6BBZ9_9NEIS1.010e-1282.50UPF0310 protein SAMN02745746_00748 n=1 Tax=Pseudog... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig58860contigP-wetherbeei_contig58860:142..499 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog349965.yinte0001_2010
PFAMsGlyoxalase
Model size358
Max annot lvl1236|Gammaproteobacteria
Hectar predicted targeting categorysignal peptide
Exons1
Evalue2.39e-06
EggNOG OGsCOG0346@1|root,COG0346@2|Bacteria,1N00H@1224|Proteobacteria,1SAEZ@1236|Gammaproteobacteria,41HEI@629|Yersinia
DescriptionRequired for resistance to the phenazine antibiotic
Cds size216
COG categoryE
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186870.4363728-CDS-P-wetherbeei_contig58860:141..3571683186870.4363728-CDS-P-wetherbeei_contig58860:141..357Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig58860 142..357 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186870.446656-UTR-P-wetherbeei_contig58860:357..4991683186870.446656-UTR-P-wetherbeei_contig58860:357..499Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig58860 358..499 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig58860.1.1prot_P-wetherbeei_contig58860.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig58860 142..357 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig58860.1.1

>prot_P-wetherbeei_contig58860.1.1 ID=prot_P-wetherbeei_contig58860.1.1|Name=mRNA_P-wetherbeei_contig58860.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=72bp
MRKLNFILLYIWTALAFAVASKAQINKPYGEWFKLGARVVQQPPIRFDLG
YLLAALDPDGRWLHAAATMVA*
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mRNA from alignment at P-wetherbeei_contig58860:142..499+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig58860.1.1 ID=mRNA_P-wetherbeei_contig58860.1.1|Name=mRNA_P-wetherbeei_contig58860.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=358bp|location=Sequence derived from alignment at P-wetherbeei_contig58860:142..499+ (Phaeothamnion wetherbeei SAG_119_79)
ATGAGAAAGCTGAACTTCATCCTGCTCTACATCTGGACCGCGCTGGCCTT
TGCCGTTGCAAGCAAGGCGCAGATCAACAAGCCCTATGGCGAGTGGTTCA
AACTCGGCGCGCGCGTCGTGCAGCAGCCACCGATCCGGTTCGATCTCGGC
TACCTTTTGGCCGCGCTCGATCCGGACGGGCGATGGTTGCACGCGGCCGC
GACAATGGTCGCGTGAGGCCGTCATGGGCGAGACCGCCAACTGGATTGCA
GTCGCCTCCGCCGAGCACGTCGGCATCGGCCGTGCGCAGGGCTTCATGCA
GGTGTGTCACGGCAAGGCCGCGCCGTTGCGGCGTGTCCTGGCGGGCAGCC
GCGTCGTC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig58860:142..499+

>mRNA_P-wetherbeei_contig58860.1.1 ID=mRNA_P-wetherbeei_contig58860.1.1|Name=mRNA_P-wetherbeei_contig58860.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=216bp|location=Sequence derived from alignment at P-wetherbeei_contig58860:142..499+ (Phaeothamnion wetherbeei SAG_119_79)
ATGAGAAAGCTGAACTTCATCCTGCTCTACATCTGGACCGCGCTGGCCTT
TGCCGTTGCAAGCAAGGCGCAGATCAACAAGCCCTATGGCGAGTGGTTCA
AACTCGGCGCGCGCGTCGTGCAGCAGCCACCGATCCGGTTCGATCTCGGC
TACCTTTTGGCCGCGCTCGATCCGGACGGGCGATGGTTGCACGCGGCCGC
GACAATGGTCGCGTGA
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