mRNA_P-wetherbeei_contig58858.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig58858.1.1
Unique NamemRNA_P-wetherbeei_contig58858.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig58858.1.1 vs. uniprot
Match: UPI001BA621E8 (hypothetical protein n=1 Tax=Bradyrhizobium sp. JYMT SZCCT0428 TaxID=2807673 RepID=UPI001BA621E8)

HSP 1 Score: 76.3 bits (186), Expect = 6.630e-17
Identity = 39/45 (86.67%), Postives = 43/45 (95.56%), Query Frame = 1 
Query:    1 MHKDQNQIVETAVEARGGLLGRPVLLVLVVSCVLAIAALIVTYSG 135
            MHKD  QIVETAVEARGGLLGRPVLLVL+VSC+LA+AAL+VTYSG
Sbjct:   57 MHKDGKQIVETAVEARGGLLGRPVLLVLIVSCILAVAALVVTYSG 101
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig58858.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
UPI001BA621E86.630e-1786.67hypothetical protein n=1 Tax=Bradyrhizobium sp. JY... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig58858contigP-wetherbeei_contig58858:88..228 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size141
Hectar predicted targeting categorysignal anchor
Exons1
Cds size141
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186870.4101806-CDS-P-wetherbeei_contig58858:87..2281683186870.4101806-CDS-P-wetherbeei_contig58858:87..228Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig58858 88..228 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig58858.1.1prot_P-wetherbeei_contig58858.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig58858 88..228 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig58858.1.1

>prot_P-wetherbeei_contig58858.1.1 ID=prot_P-wetherbeei_contig58858.1.1|Name=mRNA_P-wetherbeei_contig58858.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=47bp
MHKDQNQIVETAVEARGGLLGRPVLLVLVVSCVLAIAALIVTYSGT*
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mRNA from alignment at P-wetherbeei_contig58858:88..228-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig58858.1.1 ID=mRNA_P-wetherbeei_contig58858.1.1|Name=mRNA_P-wetherbeei_contig58858.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=141bp|location=Sequence derived from alignment at P-wetherbeei_contig58858:88..228- (Phaeothamnion wetherbeei SAG_119_79)
ATGCATAAAGATCAAAACCAAATCGTCGAGACGGCGGTGGAGGCGAGAGG
CGGTCTCTTGGGCAGGCCGGTTCTCCTGGTGCTTGTCGTGAGTTGCGTTC
TGGCAATTGCCGCACTCATCGTCACCTATTCGGGGACGTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig58858:88..228-

>mRNA_P-wetherbeei_contig58858.1.1 ID=mRNA_P-wetherbeei_contig58858.1.1|Name=mRNA_P-wetherbeei_contig58858.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=141bp|location=Sequence derived from alignment at P-wetherbeei_contig58858:88..228- (Phaeothamnion wetherbeei SAG_119_79)
ATGCATAAAGATCAAAACCAAATCGTCGAGACGGCGGTGGAGGCGAGAGG
CGGTCTCTTGGGCAGGCCGGTTCTCCTGGTGCTTGTCGTGAGTTGCGTTC
TGGCAATTGCCGCACTCATCGTCACCTATTCGGGGACGTGA
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