mRNA_P-wetherbeei_contig5885.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig5885.1.1
Unique NamemRNA_P-wetherbeei_contig5885.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig5885.1.1 vs. uniprot
Match: A0A835Z597_9STRA (MyTH4 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z597_9STRA)

HSP 1 Score: 218 bits (554), Expect = 1.930e-67
Identity = 105/137 (76.64%), Postives = 120/137 (87.59%), Query Frame = 1
Query:    1 ERFRAERDERHARAANPKYKFANFPRLRSPADYAKGNLLHKKREMERMLEWQNTAATKSLLDLDKEVCKEAITVRKSLLGYMGDKQMSFPETLAQNILMKGLDKAALRDEIYLQIMKQLTCNPKPDSTAKGWQVRCL 411
            E+FRAERD+RH +AANPKYKF N+P+LRS +DY KG LLHKKRE E+ML WQNT A KSL+DLDK++ K+AI +RKSLLGYMGDKQMSFPETLAQNIL+KGLDK  LRDE YLQIMKQLT NPKP+S AKGWQV C+
Sbjct:   83 EQFRAERDKRHTKAANPKYKFQNYPQLRSRSDYTKGLLLHKKREQEKMLSWQNTVANKSLVDLDKDLVKDAIAIRKSLLGYMGDKQMSFPETLAQNILVKGLDKPKLRDEAYLQIMKQLTENPKPESAAKGWQVMCM 219          
BLAST of mRNA_P-wetherbeei_contig5885.1.1 vs. uniprot
Match: A0A835YPP0_9STRA (Myosin I, high molecular weight-Acanthamoeba sp n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YPP0_9STRA)

HSP 1 Score: 215 bits (547), Expect = 4.470e-62
Identity = 105/137 (76.64%), Postives = 119/137 (86.86%), Query Frame = 1
Query:    1 ERFRAERDERHARAANPKYKFANFPRLRSPADYAKGNLLHKKREMERMLEWQNTAATKSLLDLDKEVCKEAITVRKSLLGYMGDKQMSFPETLAQNILMKGLDKAALRDEIYLQIMKQLTCNPKPDSTAKGWQVRCL 411
            E+FRAERD+RHA+A NPKYKF N+PRLRS +DYA+G LL+K+RE E+ML WQNT A KSL DLDK++ KEAI VRKSLLGYMGDKQM+FPETLAQNIL KGLDK  LRDE YLQIMKQLT NPKP+S AKGWQV C+
Sbjct: 1214 EQFRAERDKRHAKAGNPKYKFQNYPRLRSRSDYARGTLLYKRREQEKMLCWQNTVANKSLTDLDKDLVKEAIAVRKSLLGYMGDKQMAFPETLAQNILFKGLDKPKLRDEAYLQIMKQLTDNPKPESAAKGWQVLCM 1350          
BLAST of mRNA_P-wetherbeei_contig5885.1.1 vs. uniprot
Match: D7FVH2_ECTSI (Myosin I, high molecular weight-Acanthamoeba sp n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVH2_ECTSI)

HSP 1 Score: 200 bits (509), Expect = 5.820e-57
Identity = 93/120 (77.50%), Postives = 108/120 (90.00%), Query Frame = 1
Query:   52 KYKFANFPRLRSPADYAKGNLLHKKREMERMLEWQNTAATKSLLDLDKEVCKEAITVRKSLLGYMGDKQMSFPETLAQNILMKGLDKAALRDEIYLQIMKQLTCNPKPDSTAKGWQVRCL 411
            +YKF N+PRLR+P+DY+KG+LLHKKRE +RMLEWQNT + KSL ++ KE  K+A+TVRKSLLGYMGDKQMSFPETLAQNILMKGLDK  +RDE+YLQIMKQLT NPKPDSTAKGWQV C+
Sbjct: 1192 RYKFVNYPRLRTPSDYSKGSLLHKKREADRMLEWQNTVSNKSLTEIPKEFVKDAVTVRKSLLGYMGDKQMSFPETLAQNILMKGLDKPKVRDEVYLQIMKQLTSNPKPDSTAKGWQVMCM 1311          
BLAST of mRNA_P-wetherbeei_contig5885.1.1 vs. uniprot
Match: A0A7R9YD73_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YD73_9STRA)

HSP 1 Score: 170 bits (431), Expect = 1.830e-46
Identity = 85/137 (62.04%), Postives = 106/137 (77.37%), Query Frame = 1
Query:    1 ERFRAERDERHARAANPKYKFANFPRLRSPADYAKGNLLHKKREMERMLEWQNTAATKSLLDLDKEVCKEAITVRKSLLGYMGDKQMSFPETLAQNILMKGLDKAALRDEIYLQIMKQLTCNPKPDSTAKGWQVRCL 411
            ER + ER ER  RAANPK+ F NF  LRSP D+A+G +L+KK+  E ML+WQNT  +KSLL+LD  + K A+ V K+LLGYMGDKQMSFP TLAQ+IL KGL+   LR+EIY Q+MKQL+ NPKP+S AKGWQ+ C+
Sbjct:  671 ERLKQERLERQRRAANPKFNFRNFNGLRSPDDFARGVVLNKKKVKEGMLKWQNTLISKSLLELDTNMQKLAVQVHKALLGYMGDKQMSFPATLAQDILQKGLENIPLRNEIYCQVMKQLSSNPKPESIAKGWQMMCM 807          
BLAST of mRNA_P-wetherbeei_contig5885.1.1 vs. uniprot
Match: A0A6H5JBI4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBI4_9PHAE)

HSP 1 Score: 143 bits (360), Expect = 6.790e-37
Identity = 74/137 (54.01%), Postives = 89/137 (64.96%), Query Frame = 1
Query:    1 ERFRAERDERHARAANPKYKFANFPRLRSPADYAKGNLLHKKREMERMLEWQNTAATKSLLDLDKEVCKEAITVRKSLLGYMGDKQMSFPETLAQNILMKGLDKAALRDEIYLQIMKQLTCNPKPDSTAKGWQVRCL 411
            E+FR ERDERHA+AANP+YKF N+PRLR+P+DY+KG+LLHKKRE +RMLEWQNT + KSL ++ KE  K+A+TV                                     YLQIMKQLT NPKPDSTAKGWQV C+
Sbjct: 1217 EKFRMERDERHAKAANPRYKFVNYPRLRTPSDYSKGSLLHKKREADRMLEWQNTVSNKSLTEIPKEFVKDAVTV-------------------------------------YLQIMKQLTSNPKPDSTAKGWQVMCM 1316          
BLAST of mRNA_P-wetherbeei_contig5885.1.1 vs. uniprot
Match: A0A7S2FEI0_9STRA (Hypothetical protein n=2 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2FEI0_9STRA)

HSP 1 Score: 138 bits (348), Expect = 2.820e-35
Identity = 73/137 (53.28%), Postives = 92/137 (67.15%), Query Frame = 1
Query:    1 ERFRAERDERHARAANPKYKFANFPRLRSPADYAKGNLLHKKREMERMLEWQNTAATKSLLDLDKEVCKEAITVRKSLLGYMGDKQMSFPETLAQNILMKGLDKAALRDEIYLQIMKQLTCNPKPDSTAKGWQVRCL 411
            E  +A+  ER  RA + K+ F  +P LR+P D+AK  +L K++  E ML W N    KSL++L  +  K AI + KSLLGYMGDK MSFP TLA++IL  G +   LRDEIY+QIMKQLT NP  DS AKGWQV C+
Sbjct: 1308 EAVQAKLRERQERAKHSKFHFRLYPGLRTPDDFAKTVILQKRKLKEGMLNWSNNLIPKSLIELPSDDSKMAIQIHKSLLGYMGDKVMSFPATLAESILTTGHENIKLRDEIYMQIMKQLTKNPTADSIAKGWQVMCM 1444          
BLAST of mRNA_P-wetherbeei_contig5885.1.1 vs. uniprot
Match: A0A482S091_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482S091_9ARCH)

HSP 1 Score: 132 bits (332), Expect = 1.880e-33
Identity = 64/124 (51.61%), Postives = 86/124 (69.35%), Query Frame = 1
Query:   40 AANPKYKFANFPRLRSPADYAKGNLLHKKREMERMLEWQNTAATKSLLDLDKEVCKEAITVRKSLLGYMGDKQMSFPETLAQNILMKGLDKAALRDEIYLQIMKQLTCNPKPDSTAKGWQVRCL 411
            A   ++   NFP LRS  D+A+G +L+K +  E+ L +Q     KSL DL+K+  K A+ + K LLGYMGDKQ+ FP  LAQ+IL KG +   +RDEIYLQI+KQL+ NP+P+S AKGWQV C+
Sbjct:   55 AKQARFDVKNFPNLRSADDFARGAILNKSKVKEQFLSFQANVIPKSLTDLNKDYSKLALQIHKDLLGYMGDKQLPFPAMLAQDILRKGYEHKPIRDEIYLQIVKQLSNNPRPESVAKGWQVMCM 178          
BLAST of mRNA_P-wetherbeei_contig5885.1.1 vs. uniprot
Match: A0A5A8CSV2_CAFRO (Uncharacterized protein n=3 Tax=Sar TaxID=2698737 RepID=A0A5A8CSV2_CAFRO)

HSP 1 Score: 129 bits (323), Expect = 6.610e-32
Identity = 66/136 (48.53%), Postives = 94/136 (69.12%), Query Frame = 1
Query:    7 FRAERDERHARAANPKYKFANFPRLRSPADYAKGNLLHKKREMERMLEWQNTAATKSLLDL-DKEVCKEAITVRKSLLGYMGDKQMSFPETLAQNILMKGLDKAALRDEIYLQIMKQLTCNPKPDSTAKGWQVRCL 411
             +A+R+E + +A +PKY ++ + R+R+P  +AKG +  KKR M   L WQ+T   +SLL+L +K + K A  + K++LGY GDKQMSFP  LAQ+IL KGLD+A LRDEIYL ++KQLT N    S  + WQ+ C+
Sbjct: 1532 LKAKREETYTKAMDPKYVWSKYSRIRTPESFAKGVMFGKKRLMANQLTWQSTTINRSLLELPNKPLNKMATRLHKNILGYCGDKQMSFPAMLAQDILQKGLDEAELRDEIYLLVLKQLTGNTVKTSEMRCWQLICM 1667          
BLAST of mRNA_P-wetherbeei_contig5885.1.1 vs. uniprot
Match: A0A2R5G113_9STRA (Myosin-6 n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5G113_9STRA)

HSP 1 Score: 128 bits (321), Expect = 1.220e-31
Identity = 62/137 (45.26%), Postives = 92/137 (67.15%), Query Frame = 1
Query:    1 ERFRAERDERHARAANPKYKFANFPRLRSPADYAKGNLLHKKREMERMLEWQNTAATKSLLDLDKEVCKEAITVRKSLLGYMGDKQMSFPETLAQNILMKGLDKAALRDEIYLQIMKQLTCNPKPDSTAKGWQVRCL 411
            E F   R +   +A + +Y+F  F R+R+  DY KG   +KKR  E  L++Q T   +S+L+LDK++ K AI + +S+LGY G++ MSFP TLAQ++L+KGL+   L DEIY+Q+ K LT NPKP+S  + WQ+ C+
Sbjct: 1187 EEFEEHRAKNVKQAQHERYQFRKFYRIRTDGDYVKGLYFNKKRVAELKLQYQKTVIPRSILELDKDLNKTAINIHRSILGYCGEQLMSFPATLAQDVLIKGLELPDLVDEIYIQLCKHLTNNPKPESVGRAWQLMCM 1323          
BLAST of mRNA_P-wetherbeei_contig5885.1.1 vs. uniprot
Match: A0A482UF54_9ARCH (MyTH4 domain-containing protein (Fragment) n=1 Tax=archaeon TaxID=1906665 RepID=A0A482UF54_9ARCH)

HSP 1 Score: 125 bits (315), Expect = 4.350e-31
Identity = 63/136 (46.32%), Postives = 91/136 (66.91%), Query Frame = 1
Query:    7 FRAERDERHARAANPKYKFANFPRLRSPADYAKGNLLHKKREMERMLEWQNTAATKSLLDL-DKEVCKEAITVRKSLLGYMGDKQMSFPETLAQNILMKGLDKAALRDEIYLQIMKQLTCNPKPDSTAKGWQVRCL 411
             + +RDE+  +AA PKY++  + R+RS  ++AKG LL+K R     L W N+    S+LD  +KE+ K A+ + K++LGY G+K MSFP TLAQ+IL KGL+   L DE+Y+QI K LT NP P+S  + WQ+ C+
Sbjct:  157 MKRQRDEKWRKAAMPKYQWVKYSRMRSADEFAKGILLNKSRVKAGQLRWANSVIPTSMLDFTNKELIKCAVRINKNVLGYCGEKSMSFPATLAQDILGKGLEVPDLVDEVYVQICKHLTSNPHPESCVRAWQLLCM 292          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig5885.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835Z597_9STRA1.930e-6776.64MyTH4 domain-containing protein n=1 Tax=Tribonema ... [more]
A0A835YPP0_9STRA4.470e-6276.64Myosin I, high molecular weight-Acanthamoeba sp n=... [more]
D7FVH2_ECTSI5.820e-5777.50Myosin I, high molecular weight-Acanthamoeba sp n=... [more]
A0A7R9YD73_9STRA1.830e-4662.04Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A6H5JBI4_9PHAE6.790e-3754.01Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S2FEI0_9STRA2.820e-3553.28Hypothetical protein n=2 Tax=Dictyocha speculum Ta... [more]
A0A482S091_9ARCH1.880e-3351.61Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
A0A5A8CSV2_CAFRO6.610e-3248.53Uncharacterized protein n=3 Tax=Sar TaxID=2698737 ... [more]
A0A2R5G113_9STRA1.220e-3145.26Myosin-6 n=1 Tax=Hondaea fermentalgiana TaxID=2315... [more]
A0A482UF54_9ARCH4.350e-3146.32MyTH4 domain-containing protein (Fragment) n=1 Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig5885contigP-wetherbeei_contig5885:2721..3466 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7FVH2
Preferred nameMyo22
PFAMsFERM_M,IQ,MyTH4,Myosin_head,RA
Model size411
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons2
Evalue9.54e-58
EggNOG OGsCOG5022@1|root,KOG4229@2759|Eukaryota
Descriptionmotor activity
Cds size411
COG categoryZ
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186870.3393824-CDS-P-wetherbeei_contig5885:2720..29181683186870.3393824-CDS-P-wetherbeei_contig5885:2720..2918Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5885 2721..2918 +
1683186870.3492959-CDS-P-wetherbeei_contig5885:3253..34661683186870.3492959-CDS-P-wetherbeei_contig5885:3253..3466Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5885 3254..3466 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig5885.1.1prot_P-wetherbeei_contig5885.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig5885 2721..3466 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig5885.1.1

>prot_P-wetherbeei_contig5885.1.1 ID=prot_P-wetherbeei_contig5885.1.1|Name=mRNA_P-wetherbeei_contig5885.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=137bp
ERFRAERDERHARAANPKYKFANFPRLRSPADYAKGNLLHKKREMERMLE
WQNTAATKSLLDLDKEVCKEAITVRKSLLGYMGDKQMSFPETLAQNILMK
GLDKAALRDEIYLQIMKQLTCNPKPDSTAKGWQVRCL
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mRNA from alignment at P-wetherbeei_contig5885:2721..3466+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig5885.1.1 ID=mRNA_P-wetherbeei_contig5885.1.1|Name=mRNA_P-wetherbeei_contig5885.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=746bp|location=Sequence derived from alignment at P-wetherbeei_contig5885:2721..3466+ (Phaeothamnion wetherbeei SAG_119_79)
GAGCGGTTCCGGGCGGAGCGCGATGAGCGCCACGCGCGGGCGGCCAACCC CAAGTATAAGTTCGCCAACTTCCCCCGACTGCGCTCCCCCGCAGACTACG CCAAGGGCAACCTGCTGCACAAGAAGCGCGAGATGGAACGCATGCTCGAG TGGCAGAACACGGCGGCCACCAAGTCGCTGCTCGACCTCGACAAGGAGGT AAGTTTCCGCTGATTCGGTTTCTTTCGGTTGCCTTTTTCGGTTTGATCTT TGCTTTTTTATTCGTTTGTTTGTCTGCTCTGGCAGCTGTCACCGCTGGCT GCCGCTGTTGGCCAGTTGTCACTGCAAGCGGGCGCTGATGGTACTAGATA TCTTTACCACGGTGGTTGCTGCTACCGCTGCTGTTAGATGAGCGACCGCA GTATTTGCTGCCCGGAAGTTGTTTGCAATGGGCTGTACCAAACGAACACA ATGCGTTCCTTCCTAAACTCACTTGATCAAAATGAAATCAAGCGAAACCA AAAATGGAAACGGGAAAATGCGTCAAATTACAGGTGTGCAAGGAGGCCAT CACGGTGCGCAAGTCGCTGCTGGGCTACATGGGCGACAAGCAGATGTCCT TCCCAGAGACATTGGCACAGAACATCCTCATGAAAGGGCTGGACAAGGCG GCCCTGCGAGACGAAATCTACCTGCAGATCATGAAGCAGCTCACGTGCAA CCCCAAGCCCGATTCCACGGCCAAGGGCTGGCAGGTCCGTTGTCTG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig5885:2721..3466+

>mRNA_P-wetherbeei_contig5885.1.1 ID=mRNA_P-wetherbeei_contig5885.1.1|Name=mRNA_P-wetherbeei_contig5885.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=411bp|location=Sequence derived from alignment at P-wetherbeei_contig5885:2721..3466+ (Phaeothamnion wetherbeei SAG_119_79)
GAGCGGTTCCGGGCGGAGCGCGATGAGCGCCACGCGCGGGCGGCCAACCC
CAAGTATAAGTTCGCCAACTTCCCCCGACTGCGCTCCCCCGCAGACTACG
CCAAGGGCAACCTGCTGCACAAGAAGCGCGAGATGGAACGCATGCTCGAG
TGGCAGAACACGGCGGCCACCAAGTCGCTGCTCGACCTCGACAAGGAGGT
GTGCAAGGAGGCCATCACGGTGCGCAAGTCGCTGCTGGGCTACATGGGCG
ACAAGCAGATGTCCTTCCCAGAGACATTGGCACAGAACATCCTCATGAAA
GGGCTGGACAAGGCGGCCCTGCGAGACGAAATCTACCTGCAGATCATGAA
GCAGCTCACGTGCAACCCCAAGCCCGATTCCACGGCCAAGGGCTGGCAGG
TCCGTTGTCTG
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