mRNA_P-wetherbeei_contig58832.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig58832.1.1
Unique NamemRNA_P-wetherbeei_contig58832.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig58832.1.1 vs. uniprot
Match: A0A7C4V9J5_9PROT (Uncharacterized protein n=1 Tax=Proteobacteria bacterium TaxID=1977087 RepID=A0A7C4V9J5_9PROT)

HSP 1 Score: 167 bits (422), Expect = 1.050e-50
Identity = 79/122 (64.75%), Postives = 98/122 (80.33%), Query Frame = 3
Query:   60 VAADPA-VPELRGTWKGESHSVVM-GAGPHHPDARTAEPRFTAVPFTLVIDKQDGRRFFGTFSSSQHSETVVAVLSRGGTIFMADDDG*NVGTMLAPDRMELCYLHSTSAKRIASCTELTRQ 419
            VAA PA  P+LRGTWKGES S+V+ G  PHHP  + A PR ++VPFTLVID QDGRRF GTFSS++H E V+AV+SR G I+MADDDG  +GTMLAP+RMELCY+   ++ R+ASCTE+T+Q
Sbjct:   18 VAAQPASFPDLRGTWKGESESIVLPGGNPHHPGGKPAGPRMSSVPFTLVIDNQDGRRFSGTFSSARHKEAVIAVISRNGAIYMADDDGTTIGTMLAPNRMELCYMKVGASGRVASCTEMTKQ 139          
BLAST of mRNA_P-wetherbeei_contig58832.1.1 vs. uniprot
Match: A0A537NIV9_9PROT (Uncharacterized protein n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A537NIV9_9PROT)

HSP 1 Score: 159 bits (402), Expect = 1.120e-47
Identity = 75/120 (62.50%), Postives = 93/120 (77.50%), Query Frame = 3
Query:   63 AADPAVPELRGTWKGESHSVVMGAG-PHHPDARTAEPRFTAVPFTLVIDKQDGRRFFGTFSSSQHSETVVAVLSRGGTIFMADDDG*NVGTMLAPDRMELCYLHSTSAKRIASCTELTRQ 419
            AA  A+P+L GTWKGES S+V+G G PHH    T EP+  +VPFTL +DKQDGRRF GTFSS + +E V+AV+SR G IF+ADD+G   GT+LAP+RMELCYLH ++  RIASC ELT+Q
Sbjct:   19 AAQTAIPDLLGTWKGESESIVLGGGNPHHGSTETNEPQLRSVPFTLTVDKQDGRRFSGTFSSPRSTEKVLAVISRSGVIFLADDEGYTNGTLLAPNRMELCYLHVSAISRIASCAELTKQ 138          
BLAST of mRNA_P-wetherbeei_contig58832.1.1 vs. uniprot
Match: A0A537TRX5_9PROT (Uncharacterized protein n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A537TRX5_9PROT)

HSP 1 Score: 153 bits (386), Expect = 3.120e-45
Identity = 71/120 (59.17%), Postives = 92/120 (76.67%), Query Frame = 3
Query:   66 ADPAVPELRGTWKGESHSVVMGAG-PHHPDARTAEPRFTAVPFTLVIDKQDGRRFFGTFSSSQHSETVVAVLSRGGTIFMADDDG*NVGTMLAPDRMELCYLHSTSAKRIASCTELTRQK 422
            A  A+P+LRGTWKG S S+++GAG PHH  A + +PR  +V FT+ IDKQDGRRF GTFSS + ++  VAV+SR  TI + DDDG  VGT+LAP+RME CY+H + A R+ASCTELT+Q+
Sbjct:   20 AQTAIPDLRGTWKGNSESIILGAGNPHHAAAPSDQPRLNSVAFTVTIDKQDGRRFSGTFSSPRANDKFVAVISRNNTILLVDDDGYTVGTILAPNRMEWCYMHLSQATRVASCTELTKQQ 139          
BLAST of mRNA_P-wetherbeei_contig58832.1.1 vs. uniprot
Match: A0A537TBF5_9PROT (Uncharacterized protein n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A537TBF5_9PROT)

HSP 1 Score: 151 bits (382), Expect = 1.270e-44
Identity = 69/120 (57.50%), Postives = 92/120 (76.67%), Query Frame = 3
Query:   63 AADPAVPELRGTWKGESHSVVMGAG-PHHPDARTAEPRFTAVPFTLVIDKQDGRRFFGTFSSSQHSETVVAVLSRGGTIFMADDDG*NVGTMLAPDRMELCYLHSTSAKRIASCTELTRQ 419
            AA  A+P++RGTWKGES S+++G G PHH    + EPR   VPFT+ IDKQDGRRF GTFSS++ ++  VAV+SR  TI + DDDG  VG++LAP+R+ELCY+H + A R+ASC E+T+Q
Sbjct:   19 AAQSAIPDVRGTWKGESESIILGPGNPHHVAPSSTEPRLDNVPFTMTIDKQDGRRFSGTFSSARANDKFVAVISRNNTILLVDDDGYTVGSILAPNRIELCYMHLSQATRLASCAEMTKQ 138          
BLAST of mRNA_P-wetherbeei_contig58832.1.1 vs. uniprot
Match: A0A537RNT7_9PROT (Uncharacterized protein n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A537RNT7_9PROT)

HSP 1 Score: 136 bits (343), Expect = 7.510e-38
Identity = 64/111 (57.66%), Postives = 83/111 (74.77%), Query Frame = 3
Query:   66 ADPAVPELRGTWKGESHSVVMGAG-PHHPDARTAEPRFTAVPFTLVIDKQDGRRFFGTFSSSQHSETVVAVLSRGGTIFMADDDG*NVGTMLAPDRMELCYLHSTSAKRIA 395
            A  A+P+LRGTWKG S S+++GAG PHH  A + +PR  +V FT+ IDKQDGRRF GTFSSS+ ++  VAV+SR  TI + DDDG  VGT+LAP+RME CY+H + A  +A
Sbjct:   20 AQTAIPDLRGTWKGNSESIILGAGNPHHAAAPSDQPRLNSVAFTVTIDKQDGRRFSGTFSSSRGNDKFVAVISRNNTILLVDDDGYTVGTILAPNRMEWCYMHLSQAAVVA 130          
BLAST of mRNA_P-wetherbeei_contig58832.1.1 vs. uniprot
Match: K6GSX7_9DELT (Uncharacterized protein n=1 Tax=Solidesulfovibrio magneticus str. Maddingley MBC34 TaxID=1206767 RepID=K6GSX7_9DELT)

HSP 1 Score: 96.3 bits (238), Expect = 1.440e-22
Identity = 54/118 (45.76%), Postives = 75/118 (63.56%), Query Frame = 3
Query:   69 DPAVPELRGTWKGESHSVVMGAGPHHPDARTAEPRFTAVPFTLVIDKQDGRRFFGTFSSSQHSETVVAVLSRGGTIFMADDDG*NVGTMLAPDRMELCYLHSTSAKRIASCTELTRQK 422
            + ++P L G WKG S SV MGA   H DA  A P F  V +TL IDKQ+GR F+GT +SS+  ETVV V+  G  + MADDDG  +G + +P+R+ + YL +  A ++AS T   R++
Sbjct:   32 EKSIPNLVGVWKGTSDSVAMGAL-GHVDAAAA-PTFLHVDWTLTIDKQEGRAFYGTKASSRAKETVVGVVD-GAQVTMADDDGTYLGKLTSPNRLIVRYLEAGKASKVASITLYVRER 146          
BLAST of mRNA_P-wetherbeei_contig58832.1.1 vs. uniprot
Match: A0A0B1U195_9DELT (Uncharacterized protein n=2 Tax=unclassified Desulfovibrio TaxID=2593640 RepID=A0A0B1U195_9DELT)

HSP 1 Score: 93.6 bits (231), Expect = 1.620e-21
Identity = 49/117 (41.88%), Postives = 72/117 (61.54%), Query Frame = 3
Query:   69 DPAVPELRGTWKGESHSVVMGAGPHHPDARTAEPRFTAVPFTLVIDKQDGRRFFGTFSSSQHSETVVAVLSRGGTIFMADDDG*NVGTMLAPDRMELCYLHSTSAKRIASCTELTRQ 419
            + ++P++ G WKG S SV MG   H     T  P+F  + +TL IDKQ+GR FFGT +S++  ETVV V+  G T++MADDDG  VG + + +R+ L Y+      ++AS T   R+
Sbjct:   32 EKSIPDVTGVWKGTSDSVAMGRLGHTDPTTT--PKFLHLDWTLTIDKQEGRAFFGTKASARGKETVVGVID-GATLYMADDDGAFVGKLTSKNRLVLKYMEPGKESKVASITLYVRE 145          
BLAST of mRNA_P-wetherbeei_contig58832.1.1 vs. uniprot
Match: A0A1Q7BWY0_9PROT (Uncharacterized protein n=1 Tax=Alphaproteobacteria bacterium 13_2_20CM_2_64_7 TaxID=1803507 RepID=A0A1Q7BWY0_9PROT)

HSP 1 Score: 89.4 bits (220), Expect = 6.520e-21
Identity = 39/66 (59.09%), Postives = 51/66 (77.27%), Query Frame = 3
Query:  195 LVIDKQDGRRFFGTFSSSQHSETVVAVLSRGGTIFMADDDG*NVGTMLAPDRMELCYLHSTSAKRI 392
            + +DKQDGRRF GTFSSS+ ++  V V+SR  TIF+ DDDG  VGT+LAP+RME CY+H + A R+
Sbjct:    1 MTVDKQDGRRFSGTFSSSRGNDKFVGVISRNNTIFLVDDDGYTVGTVLAPNRMEWCYMHLSQATRV 66          
BLAST of mRNA_P-wetherbeei_contig58832.1.1 vs. uniprot
Match: A0A6L9MJX3_9HYPH (Uncharacterized protein n=1 Tax=Aurantimonas aggregata TaxID=2047720 RepID=A0A6L9MJX3_9HYPH)

HSP 1 Score: 91.3 bits (225), Expect = 8.120e-21
Identity = 45/111 (40.54%), Postives = 69/111 (62.16%), Query Frame = 3
Query:   75 AVPELRGTWKGESHSVVMGAGPHHPDARTAEPRFTAVPFTLVIDKQDGRRFFGTFSSSQHSETVVAVLSRGGTIFMA-DDDG*NVGTMLAPDRMELCYLHSTSAKRIASCT 404
            A+P+L+G W G S ++++G+  HH D   A PR + + FT+ ++ QDGRRF+GTFSS++ SET + V+   G   +A D DG   G +   D MEL Y H+  +  +A+ T
Sbjct:   28 ALPDLKGNWVGTSETILLGSAAHHEDGEAA-PRLSEMEFTMAVEGQDGRRFWGTFSSAKSSETFMGVIGFDGKSIVARDTDGHIDGALADDDTMELIYSHTGDSTVVAATT 137          
BLAST of mRNA_P-wetherbeei_contig58832.1.1 vs. uniprot
Match: E1JWC1_SOLFR (Uncharacterized protein n=1 Tax=Solidesulfovibrio fructosivorans JJ] TaxID=596151 RepID=E1JWC1_SOLFR)

HSP 1 Score: 91.3 bits (225), Expect = 1.190e-20
Identity = 47/115 (40.87%), Postives = 68/115 (59.13%), Query Frame = 3
Query:   75 AVPELRGTWKGESHSVVMGAGPHHPDARTAEPRFTAVPFTLVIDKQDGRRFFGTFSSSQHSETVVAVLSRGGTIFMADDDG*NVGTMLAPDRMELCYLHSTSAKRIASCTELTRQ 419
            AVP++ G WKG S +V MG    H DA    P+F    +TL IDKQ+GR F+GT +S++  ETVV V+     ++MADDDG  +G +   + M + Y+  T   ++AS T   R+
Sbjct:   34 AVPDVTGVWKGTSDTVAMGKL-GHADA-VHSPQFLHADWTLTIDKQEGRAFYGTKASARAKETVVGVIDGAAKLYMADDDGVYIGKLTGKNTMIITYVEGTKESKVASITHYRRE 146          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig58832.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 20
Match NameE-valueIdentityDescription
A0A7C4V9J5_9PROT1.050e-5064.75Uncharacterized protein n=1 Tax=Proteobacteria bac... [more]
A0A537NIV9_9PROT1.120e-4762.50Uncharacterized protein n=1 Tax=Alphaproteobacteri... [more]
A0A537TRX5_9PROT3.120e-4559.17Uncharacterized protein n=1 Tax=Alphaproteobacteri... [more]
A0A537TBF5_9PROT1.270e-4457.50Uncharacterized protein n=1 Tax=Alphaproteobacteri... [more]
A0A537RNT7_9PROT7.510e-3857.66Uncharacterized protein n=1 Tax=Alphaproteobacteri... [more]
K6GSX7_9DELT1.440e-2245.76Uncharacterized protein n=1 Tax=Solidesulfovibrio ... [more]
A0A0B1U195_9DELT1.620e-2141.88Uncharacterized protein n=2 Tax=unclassified Desul... [more]
A0A1Q7BWY0_9PROT6.520e-2159.09Uncharacterized protein n=1 Tax=Alphaproteobacteri... [more]
A0A6L9MJX3_9HYPH8.120e-2140.54Uncharacterized protein n=1 Tax=Aurantimonas aggre... [more]
E1JWC1_SOLFR1.190e-2040.87Uncharacterized protein n=1 Tax=Solidesulfovibrio ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig58832contigP-wetherbeei_contig58832:12..433 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog1380394.JADL01000001_gene2129
Model size422
Max annot lvl28211|Alphaproteobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue7.29e-18
EggNOG OGs2EJ3N@1|root,33CUX@2|Bacteria,1Q4IP@1224|Proteobacteria,2UN8J@28211|Alphaproteobacteria
Cds size195
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186870.2899945-UTR-P-wetherbeei_contig58832:11..1361683186870.2899945-UTR-P-wetherbeei_contig58832:11..136Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig58832 12..136 +
1683186870.311303-UTR-P-wetherbeei_contig58832:331..4331683186870.311303-UTR-P-wetherbeei_contig58832:331..433Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig58832 332..433 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186870.2997105-CDS-P-wetherbeei_contig58832:136..3311683186870.2997105-CDS-P-wetherbeei_contig58832:136..331Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig58832 137..331 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig58832.1.1prot_P-wetherbeei_contig58832.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig58832 137..331 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig58832.1.1

>prot_P-wetherbeei_contig58832.1.1 ID=prot_P-wetherbeei_contig58832.1.1|Name=mRNA_P-wetherbeei_contig58832.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=65bp
MGAGPHHPDARTAEPRFTAVPFTLVIDKQDGRRFFGTFSSSQHSETVVAV
LSRGGTIFMADDDG*
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mRNA from alignment at P-wetherbeei_contig58832:12..433+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig58832.1.1 ID=mRNA_P-wetherbeei_contig58832.1.1|Name=mRNA_P-wetherbeei_contig58832.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=422bp|location=Sequence derived from alignment at P-wetherbeei_contig58832:12..433+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCGCAAGCTTGCCTGGATCGTGACATTTGTCGCGCTTGCGGCGCTCGC CCGCCTGCGGTGGCGGCTGACCCCGCGGTTCCCGAGTTGCGCGGGACCTG GAAGGGCGAGAGTCACTCCGTCGTGATGGGCGCGGGCCCCCATCATCCCG ATGCCAGGACGGCGGAACCGCGGTTCACGGCCGTTCCGTTCACGCTGGTG ATCGACAAGCAGGACGGCCGCCGATTCTTCGGAACATTCTCGTCGAGCCA GCACAGCGAGACGGTCGTCGCCGTCCTGTCGCGCGGCGGCACCATCTTCA TGGCCGACGACGATGGCTAGAACGTCGGCACCATGCTCGCGCCGGATCGC ATGGAGCTCTGCTACCTGCATTCGACATCGGCGAAACGCATTGCGTCGTG CACGGAGCTGACCAGACAGAAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig58832:12..433+

>mRNA_P-wetherbeei_contig58832.1.1 ID=mRNA_P-wetherbeei_contig58832.1.1|Name=mRNA_P-wetherbeei_contig58832.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=195bp|location=Sequence derived from alignment at P-wetherbeei_contig58832:12..433+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGGCGCGGGCCCCCATCATCCCGATGCCAGGACGGCGGAACCGCGGTT
CACGGCCGTTCCGTTCACGCTGGTGATCGACAAGCAGGACGGCCGCCGAT
TCTTCGGAACATTCTCGTCGAGCCAGCACAGCGAGACGGTCGTCGCCGTC
CTGTCGCGCGGCGGCACCATCTTCATGGCCGACGACGATGGCTAG
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