mRNA_P-wetherbeei_contig5880.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig5880.1.1
Unique NamemRNA_P-wetherbeei_contig5880.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig5880.1.1 vs. uniprot
Match: D7FMK5_ECTSI (Dynein-1-alpha heavy chain n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FMK5_ECTSI)

HSP 1 Score: 233 bits (593), Expect = 4.810e-68
Identity = 110/147 (74.83%), Postives = 127/147 (86.39%), Query Frame = 1 
Query:    1 MTNKYLDGWRRYDTVYNLWNPKRKQALDKLAEKDHSCVYFDTRIASYELLAETVRAQPKERDIEFLRVDCSAVAAGIAAQADQWRQDYGAVLHQCSAMLLENLSQKMSQLEADLDAEPSDLESLKAILATITRVSAERMDTELAYLD 441
            M NKYLDGWRRYDTVYNLWNPKRK+AL+KLAEK H+CVYFDTRIASYELLAETVRAQP E+D++F+R+DC  VA GIAAQADQW+ DYGAVLHQCS+ LLE+L  KMSQLEADL A+P DL++LK +L TI  +S   MD EL+YLD
Sbjct: 1105 MMNKYLDGWRRYDTVYNLWNPKRKKALEKLAEKKHTCVYFDTRIASYELLAETVRAQPSEKDVDFIRIDCYPVAVGIAAQADQWKTDYGAVLHQCSSALLEDLCGKMSQLEADLRADPQDLDALKFVLNTIAAISGMGMDIELSYLD 1251
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BLAST of mRNA_P-wetherbeei_contig5880.1.1 vs. uniprot
Match: A0A6A5AQN2_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A5AQN2_9STRA)

HSP 1 Score: 181 bits (459), Expect = 5.100e-50
Identity = 86/146 (58.90%), Postives = 109/146 (74.66%), Query Frame = 1 
Query:    7 NKYLDGWRRYDTVYNLWNPKRKQALDKLAEKDHSCVYFDTRIASYELLAETVRAQPKERDIEFLRVDCSAVAAGIAAQADQWRQDYGAVLHQCSAMLLENLSQKMSQLEADLDAEPSDLESLKAILATITRVSAERMDTELAYLDV 444
            NKYLD WRRYDTVY+LWN KR+ ALDKL EK  SCVYFDTR+ASY  LAE+VR QP E++ +FL+++C AVA  IA Q+D+W++DYG +LH+ SA  L  +S KM   E DL ++P DL SLKA+L TI  +SA  M+ EL Y D+
Sbjct: 1154 NKYLDSWRRYDTVYSLWNAKRRSALDKLGEKKPSCVYFDTRMASYARLAESVRNQPTEKETDFLQINCLAVAVTIAKQSDKWKEDYGKILHELSAKKLAAISAKMDAFELDLQSDPQDLASLKALLNTIAVISAAGMEMELEYTDI 1299
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BLAST of mRNA_P-wetherbeei_contig5880.1.1 vs. uniprot
Match: A0A3R6YL83_9STRA (E3 ubiquitin-protein ligase RNF170 n=15 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A3R6YL83_9STRA)

HSP 1 Score: 180 bits (457), Expect = 9.760e-50
Identity = 86/146 (58.90%), Postives = 108/146 (73.97%), Query Frame = 1 
Query:    7 NKYLDGWRRYDTVYNLWNPKRKQALDKLAEKDHSCVYFDTRIASYELLAETVRAQPKERDIEFLRVDCSAVAAGIAAQADQWRQDYGAVLHQCSAMLLENLSQKMSQLEADLDAEPSDLESLKAILATITRVSAERMDTELAYLDV 444
            NKYLD WRRYDTVY+LWN KR+ ALDKL EK  SCVYFDTR+ASY  LAE+VR QP E++ +FL+++C AVA  IA Q+D+W+ DYG +LH+ SA  L  +S KM   E DL ++P DL SLKA+L TI  +SA  M+ EL Y D+
Sbjct: 1268 NKYLDSWRRYDTVYSLWNAKRRSALDKLGEKKPSCVYFDTRMASYARLAESVRNQPTEKETDFLQINCLAVAVTIAKQSDKWKDDYGKILHELSAKKLAAISAKMDAFELDLQSDPQDLASLKALLNTIAVISAAGMEMELEYTDI 1413
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BLAST of mRNA_P-wetherbeei_contig5880.1.1 vs. uniprot
Match: A0A2D4BJT8_PYTIN (Dynein heavy chain (Fragment) n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BJT8_PYTIN)

HSP 1 Score: 176 bits (445), Expect = 4.020e-48
Identity = 83/148 (56.08%), Postives = 106/148 (71.62%), Query Frame = 1 
Query:    1 MTNKYLDGWRRYDTVYNLWNPKRKQALDKLAEKDHSCVYFDTRIASYELLAETVRAQPKERDIEFLRVDCSAVAAGIAAQADQWRQDYGAVLHQCSAMLLENLSQKMSQLEADLDAEPSDLESLKAILATITRVSAERMDTELAYLDV 444
            + NKYLD WRRYDTVYNLWN KR+ AL+KLA+K   CVYFDTR+A Y  LAE+VR QP E+D +FL+++  AVA  IA QA+ W+ DYG +L++ S   L  +S  M QLE +LDA P DLESLK +L T+ R+S   M+ EL Y D+
Sbjct:  160 IVNKYLDSWRRYDTVYNLWNTKRRAALEKLADKKPPCVYFDTRMAQYTRLAESVRNQPPEKDTDFLQINALAVAIAIAKQAEMWKDDYGKILYEVSTKKLSAISSTMDQLEIELDATPEDLESLKKVLHTVARISDMSMEMELEYADI 307
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BLAST of mRNA_P-wetherbeei_contig5880.1.1 vs. uniprot
Match: A0A485K393_9STRA (Aste57867_701 protein n=3 Tax=Aphanomyces TaxID=100860 RepID=A0A485K393_9STRA)

HSP 1 Score: 175 bits (443), Expect = 7.480e-48
Identity = 83/146 (56.85%), Postives = 107/146 (73.29%), Query Frame = 1 
Query:    7 NKYLDGWRRYDTVYNLWNPKRKQALDKLAEKDHSCVYFDTRIASYELLAETVRAQPKERDIEFLRVDCSAVAAGIAAQADQWRQDYGAVLHQCSAMLLENLSQKMSQLEADLDAEPSDLESLKAILATITRVSAERMDTELAYLDV 444
            NKYLD WRRYDTVY+LWN KR+ ALDKL EK  SCVYFDTR+ASY  LAE+VR QP E++ +FL+++C AVA  IA Q+++W+ DYG +LH+ SA  L  +  K+   E DL ++P DL SLKA+L TI  +SA  M+ EL Y D+
Sbjct: 1119 NKYLDSWRRYDTVYSLWNAKRRAALDKLGEKKPSCVYFDTRMASYARLAESVRNQPTEKETDFLQINCLAVAVTIAKQSEKWKDDYGKILHELSAKKLSAICAKIDGFETDLQSDPRDLGSLKALLNTIAVISAASMEMELEYTDI 1264
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BLAST of mRNA_P-wetherbeei_contig5880.1.1 vs. uniprot
Match: A0A5D6XEH4_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XEH4_9STRA)

HSP 1 Score: 174 bits (440), Expect = 1.890e-47
Identity = 79/148 (53.38%), Postives = 106/148 (71.62%), Query Frame = 1 
Query:    1 MTNKYLDGWRRYDTVYNLWNPKRKQALDKLAEKDHSCVYFDTRIASYELLAETVRAQPKERDIEFLRVDCSAVAAGIAAQADQWRQDYGAVLHQCSAMLLENLSQKMSQLEADLDAEPSDLESLKAILATITRVSAERMDTELAYLDV 444
            + N+YLD WRRYDTVYNLWN KR+ AL+KLA+K   CVYFDTR+A Y  LAE+VR QP E+D +FL+++C+ VA  +A Q + W+ DYG VL+  SA  L  LS  M QLE++L+A P DLESLK +L  +  ++ + M+ EL Y D+
Sbjct: 1188 LVNRYLDSWRRYDTVYNLWNSKRRSALEKLADKKPPCVYFDTRMAQYSRLAESVRGQPTEKDTDFLQINCAPVALAVAKQTEMWKDDYGRVLYDLSARKLLALSASMEQLESELEATPEDLESLKKVLNVVANIADKSMEVELEYADI 1335
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BLAST of mRNA_P-wetherbeei_contig5880.1.1 vs. uniprot
Match: A0A8K1C6K4_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1C6K4_PYTOL)

HSP 1 Score: 171 bits (433), Expect = 1.590e-46
Identity = 80/148 (54.05%), Postives = 106/148 (71.62%), Query Frame = 1 
Query:    1 MTNKYLDGWRRYDTVYNLWNPKRKQALDKLAEKDHSCVYFDTRIASYELLAETVRAQPKERDIEFLRVDCSAVAAGIAAQADQWRQDYGAVLHQCSAMLLENLSQKMSQLEADLDAEPSDLESLKAILATITRVSAERMDTELAYLDV 444
            + NKYLD WRRYDTVYNLWN KR+ AL+KLA+K   CVYFDTR+A Y  LAE+VR QP E+D +FL+++C  VA  IA QA+ W+ DYG +L++ S   L  +S  M QLE +L+A P DLESLK +L  + ++S   M+ EL Y+D+
Sbjct: 1142 IVNKYLDSWRRYDTVYNLWNSKRRSALEKLADKKPPCVYFDTRMAQYTRLAESVRNQPTEKDTDFLQINCLPVAIAIAKQAEMWKDDYGKILYEVSNKKLLAISSMMDQLEGELEAVPEDLESLKKVLNIVAQISDMSMEMELEYVDI 1289
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BLAST of mRNA_P-wetherbeei_contig5880.1.1 vs. uniprot
Match: D0MTX3_PHYIT (Dynein heavy chain n=15 Tax=Phytophthora TaxID=4783 RepID=D0MTX3_PHYIT)

HSP 1 Score: 171 bits (432), Expect = 2.260e-46
Identity = 80/148 (54.05%), Postives = 105/148 (70.95%), Query Frame = 1 
Query:    1 MTNKYLDGWRRYDTVYNLWNPKRKQALDKLAEKDHSCVYFDTRIASYELLAETVRAQPKERDIEFLRVDCSAVAAGIAAQADQWRQDYGAVLHQCSAMLLENLSQKMSQLEADLDAEPSDLESLKAILATITRVSAERMDTELAYLDV 444
            + N+YLD WRRYDTVYNLWN KR+ AL+KLA+K   CVYFDTR+A Y  LAE+VR QP E+D +FL+++C  +A  IA QA+ W+ DYG +L + S   L  +S  M QLEA+L+A P DLESLK +L T+  +S   M+ EL Y D+
Sbjct: 1113 IVNRYLDSWRRYDTVYNLWNTKRRSALEKLADKKPPCVYFDTRMAQYTRLAESVRNQPTEKDTDFLQINCLPLAVSIAKQAEMWKDDYGKILLEVSNKKLVAISNSMDQLEAELEASPEDLESLKKVLNTVASISDMGMEMELEYADI 1260
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BLAST of mRNA_P-wetherbeei_contig5880.1.1 vs. uniprot
Match: T0QFT1_SAPDV (Uncharacterized protein n=1 Tax=Saprolegnia diclina (strain VS20) TaxID=1156394 RepID=T0QFT1_SAPDV)

HSP 1 Score: 169 bits (427), Expect = 1.070e-45
Identity = 82/146 (56.16%), Postives = 105/146 (71.92%), Query Frame = 1 
Query:    7 NKYLDGWRRYDTVYNLWNPKRKQALDKLAEKDHSCVYFDTRIASYELLAETVRAQPKERDIEFLRVDCSAVAAGIAAQADQWRQDYGAVLHQCSAMLLENLSQKMSQLEADLDAEPSDLESLKAILATITRVSAERMDTELAYLDV 444
            NKYLD WRRYDTVY LWNPKR+ ALDKLA+K  SCVYFD R+ASY  LA++VR+QP E++ +FL+++C AVA  IA QA++W+ DYG +L + S   L      M   E +L A P+DL SLKA+L TI R+SA  M+ EL Y D+
Sbjct: 1106 NKYLDSWRRYDTVYALWNPKRRAALDKLADKKPSCVYFDARMASYARLADSVRSQPTEKETDFLQINCFAVAVAIAKQAEKWKDDYGQILLELSTKKLAASVAIMDGFEKELVAAPTDLASLKALLNTIARISASSMEMELDYCDI 1251
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BLAST of mRNA_P-wetherbeei_contig5880.1.1 vs. uniprot
Match: K3WKZ1_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WKZ1_GLOUD)

HSP 1 Score: 168 bits (425), Expect = 1.980e-45
Identity = 78/148 (52.70%), Postives = 104/148 (70.27%), Query Frame = 1 
Query:    1 MTNKYLDGWRRYDTVYNLWNPKRKQALDKLAEKDHSCVYFDTRIASYELLAETVRAQPKERDIEFLRVDCSAVAAGIAAQADQWRQDYGAVLHQCSAMLLENLSQKMSQLEADLDAEPSDLESLKAILATITRVSAERMDTELAYLDV 444
            + N+YLD WRRYDTVYNLWN KR+ AL+KLA+K   CVYFDTR+A Y  LAE+VR QP E+D +FL+++C  VA  IA QA+ W+ DYG +L+  S   L  +S  M QLE +L+A P DL+SLK +L  +T ++   M+ EL Y D+
Sbjct: 1066 IVNRYLDSWRRYDTVYNLWNTKRRSALEKLADKKPPCVYFDTRMAQYTRLAESVRNQPTEKDTDFLQINCLPVAIAIAKQAEMWKDDYGKILYDLSNKKLLTISVTMDQLENELEATPEDLDSLKKVLNVVTNIADMSMEVELEYTDI 1213
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig5880.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FMK5_ECTSI4.810e-6874.83Dynein-1-alpha heavy chain n=2 Tax=Ectocarpus TaxI... [more]
A0A6A5AQN2_9STRA5.100e-5058.90Uncharacterized protein n=1 Tax=Aphanomyces astaci... [more]
A0A3R6YL83_9STRA9.760e-5058.90E3 ubiquitin-protein ligase RNF170 n=15 Tax=Aphano... [more]
A0A2D4BJT8_PYTIN4.020e-4856.08Dynein heavy chain (Fragment) n=1 Tax=Pythium insi... [more]
A0A485K393_9STRA7.480e-4856.85Aste57867_701 protein n=3 Tax=Aphanomyces TaxID=10... [more]
A0A5D6XEH4_9STRA1.890e-4753.38Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
A0A8K1C6K4_PYTOL1.590e-4654.05Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
D0MTX3_PHYIT2.260e-4654.05Dynein heavy chain n=15 Tax=Phytophthora TaxID=478... [more]
T0QFT1_SAPDV1.070e-4556.16Uncharacterized protein n=1 Tax=Saprolegnia diclin... [more]
K3WKZ1_GLOUD1.980e-4552.70Uncharacterized protein n=1 Tax=Globisporangium ul... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig5880contigP-wetherbeei_contig5880:320..766 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7FMK5
Preferred nameDNAH10
PFAMsAAA_5,AAA_6,AAA_7,AAA_8,AAA_9,DHC_N1,DHC_N2,Dynein_heavy,MT
Model size448
Max annot lvl2759|Eukaryota
KEGG koko:K10408
KEGG Pathwayko05016,map05016
Hectar predicted targeting categoryother localisation
GOsGO:0000226,GO:0001539,GO:0001578,GO:0003341,GO:0003674,GO:0003774,GO:0003777,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005856,GO:0005858,GO:0005875,GO:0005929,GO:0005930,GO:0006928,GO:0006996,GO:0007010,GO:0007017,GO:0007018,GO:0008017,GO:0008092,GO:0008150,GO:0008569,GO:0009987,GO:0015630,GO:0015631,GO:0016043,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0022607,GO:0030030,GO:0030031,GO:0030286,GO:0031514,GO:0032838,GO:0032991,GO:0034622,GO:0035082,GO:0036156,GO:0036159,GO:0040011,GO:0042623,GO:0042995,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043933,GO:0044085,GO:0044422,GO:0044424,GO:0044430,GO:0044441,GO:0044444,GO:0044446,GO:0044447,GO:0044463,GO:0044464,GO:0044782,GO:0045503,GO:0045505,GO:0048870,GO:0051179,GO:0051674,GO:0051959,GO:0060271,GO:0060285,GO:0060294,GO:0065003,GO:0070286,GO:0070925,GO:0071840,GO:0097014,GO:0099568,GO:0120025,GO:0120031,GO:0120036,GO:0120038,GO:1902494,GO:1990939
Exons1
Evalue7.89e-69
EggNOG OGsCOG5245@1|root,KOG3595@2759|Eukaryota
Descriptiondynein light chain binding
Cds size447
COG categoryZ
BRITEko00000,ko00001,ko04812
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186869.9418967-CDS-P-wetherbeei_contig5880:319..7661683186869.9418967-CDS-P-wetherbeei_contig5880:319..766Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5880 320..766 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig5880.1.1prot_P-wetherbeei_contig5880.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig5880 320..766 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig5880.1.1

>prot_P-wetherbeei_contig5880.1.1 ID=prot_P-wetherbeei_contig5880.1.1|Name=mRNA_P-wetherbeei_contig5880.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=149bp
MTNKYLDGWRRYDTVYNLWNPKRKQALDKLAEKDHSCVYFDTRIASYELL
AETVRAQPKERDIEFLRVDCSAVAAGIAAQADQWRQDYGAVLHQCSAMLL
ENLSQKMSQLEADLDAEPSDLESLKAILATITRVSAERMDTELAYLDVT
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mRNA from alignment at P-wetherbeei_contig5880:320..766+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig5880.1.1 ID=mRNA_P-wetherbeei_contig5880.1.1|Name=mRNA_P-wetherbeei_contig5880.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=447bp|location=Sequence derived from alignment at P-wetherbeei_contig5880:320..766+ (Phaeothamnion wetherbeei SAG_119_79)
ATGACCAACAAGTACCTGGACGGTTGGCGGCGTTACGACACCGTTTACAA
CCTCTGGAACCCCAAGCGCAAGCAGGCGCTCGACAAGCTCGCCGAAAAGG
ACCATTCCTGCGTCTACTTTGACACGCGCATCGCCAGCTACGAGCTGCTG
GCCGAGACCGTCCGCGCGCAGCCCAAGGAGCGCGACATCGAGTTCTTGCG
CGTGGACTGCTCAGCCGTCGCGGCGGGCATCGCTGCACAGGCAGACCAAT
GGCGACAGGACTACGGTGCTGTGCTGCACCAGTGCTCGGCGATGCTGCTG
GAAAACCTTTCACAGAAAATGTCGCAGCTGGAGGCAGATCTGGACGCGGA
ACCAAGCGATTTAGAGTCGCTGAAGGCCATCCTGGCGACCATCACGCGCG
TGTCGGCGGAACGGATGGACACGGAGCTGGCGTACCTCGACGTGACA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig5880:320..766+

>mRNA_P-wetherbeei_contig5880.1.1 ID=mRNA_P-wetherbeei_contig5880.1.1|Name=mRNA_P-wetherbeei_contig5880.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=447bp|location=Sequence derived from alignment at P-wetherbeei_contig5880:320..766+ (Phaeothamnion wetherbeei SAG_119_79)
ATGACCAACAAGTACCTGGACGGTTGGCGGCGTTACGACACCGTTTACAA
CCTCTGGAACCCCAAGCGCAAGCAGGCGCTCGACAAGCTCGCCGAAAAGG
ACCATTCCTGCGTCTACTTTGACACGCGCATCGCCAGCTACGAGCTGCTG
GCCGAGACCGTCCGCGCGCAGCCCAAGGAGCGCGACATCGAGTTCTTGCG
CGTGGACTGCTCAGCCGTCGCGGCGGGCATCGCTGCACAGGCAGACCAAT
GGCGACAGGACTACGGTGCTGTGCTGCACCAGTGCTCGGCGATGCTGCTG
GAAAACCTTTCACAGAAAATGTCGCAGCTGGAGGCAGATCTGGACGCGGA
ACCAAGCGATTTAGAGTCGCTGAAGGCCATCCTGGCGACCATCACGCGCG
TGTCGGCGGAACGGATGGACACGGAGCTGGCGTACCTCGACGTGACA
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