mRNA_P-wetherbeei_contig5879.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig5879.2.1
Unique NamemRNA_P-wetherbeei_contig5879.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig5879.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig5879contigP-wetherbeei_contig5879:2906..3259 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size175
Hectar predicted targeting categorysignal peptide
Exons2
Cds size123
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186869.7006872-UTR-P-wetherbeei_contig5879:2905..29231683186869.7006872-UTR-P-wetherbeei_contig5879:2905..2923Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig5879 2906..2923 -
1683186869.7305446-UTR-P-wetherbeei_contig5879:3225..32591683186869.7305446-UTR-P-wetherbeei_contig5879:3225..3259Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig5879 3226..3259 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186869.7117324-CDS-P-wetherbeei_contig5879:2923..29931683186869.7117324-CDS-P-wetherbeei_contig5879:2923..2993Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5879 2924..2993 -
1683186869.7220683-CDS-P-wetherbeei_contig5879:3172..32251683186869.7220683-CDS-P-wetherbeei_contig5879:3172..3225Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5879 3173..3225 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig5879.2.1prot_P-wetherbeei_contig5879.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig5879 2924..3225 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig5879.2.1

>prot_P-wetherbeei_contig5879.2.1 ID=prot_P-wetherbeei_contig5879.2.1|Name=mRNA_P-wetherbeei_contig5879.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=41bp
MDGKRHSHQPPGFSRFFLAAVLLTVSWWKSPTWATSTASI*
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mRNA from alignment at P-wetherbeei_contig5879:2906..3259-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig5879.2.1 ID=mRNA_P-wetherbeei_contig5879.2.1|Name=mRNA_P-wetherbeei_contig5879.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=354bp|location=Sequence derived from alignment at P-wetherbeei_contig5879:2906..3259- (Phaeothamnion wetherbeei SAG_119_79)
AAGGTCCTAAAAATCCCTGAAGAAGAAGCTGTAAATGGACGGGAAACGAC
ACAGCCACCAACCACCCGGATTCAGCAGATTCTTCTTGTAAGTGTTGAAG
GTTATTAGTCGGCAACAAAGTAGAGCTCGAGAAGAGCTAGAGAATAAACC
TACTAACGTTCTTCATTCAGCCAAACGTACGGCCTCGCTACGTAGCATTT
CGTTCATCATTTCCTTTTACTGCTGGGCCGGAAGGCCTTCTGGCGGGTTT
CCATCGTTCCATGCAGGGCCGCAGTACTGCTGACGGTTAGCTGGTGGAAG
AGTCCTACCTGGGCTACTTCCACCGCGTCTATCTAGCAAGCCGCGCCTTA
CGAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig5879:2906..3259-

>mRNA_P-wetherbeei_contig5879.2.1 ID=mRNA_P-wetherbeei_contig5879.2.1|Name=mRNA_P-wetherbeei_contig5879.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=123bp|location=Sequence derived from alignment at P-wetherbeei_contig5879:2906..3259- (Phaeothamnion wetherbeei SAG_119_79)
ATGGACGGGAAACGACACAGCCACCAACCACCCGGATTCAGCAGATTCTT
CTTGGCCGCAGTACTGCTGACGGTTAGCTGGTGGAAGAGTCCTACCTGGG
CTACTTCCACCGCGTCTATCTAG
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