mRNA_P-wetherbeei_contig58760.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig58760.1.1
Unique NamemRNA_P-wetherbeei_contig58760.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig58760.1.1 vs. uniprot
Match: A0A7S8C5D7_9HYPH (AMP-binding protein n=1 Tax=Kaustia mangrovi TaxID=2593653 RepID=A0A7S8C5D7_9HYPH)

HSP 1 Score: 164 bits (416), Expect = 3.240e-45
Identity = 86/164 (52.44%), Postives = 106/164 (64.63%), Query Frame = 1
Query:   10 ACARLGAILVSVNTRFRAHEVADIVSRSGCRMLVLWPDFKAIDFTGILRAIAPDALQALEHVIVYDEADEPAASPVIAGVPVSTYAALGHSSEDVAPMVGSPLHRCVIFTTSGTTRAPKFVCHVQGTVVRHAHDVASALGMQRVGAKVLQALPLCGVFGYTQAL 501
            A ARLGA+ VSVNTRFR+ EV DIV RSGCR L+LWP F+ IDF GIL  +AP AL  L+HV+   +A     +P++AG   + +A L   +E +    G P H C+IFTTSGTT  PKFV H QG +  HA   A+ LG +  G  +LQ LP CG FG TQAL
Sbjct:   73 ALARLGAVAVSVNTRFRSAEVEDIVGRSGCRALILWPGFRNIDFAGILAGVAPAALALLDHVVTVGDAPR---APLVAGAQTTAFADL-LKAEPLEADEGGPDHPCLIFTTSGTTSKPKFVLHRQGALAAHARHAATGLGYREAGTVLLQLLPFCGTFGLTQAL 232          
BLAST of mRNA_P-wetherbeei_contig58760.1.1 vs. uniprot
Match: A0A8J7N1A3_9PROT (AMP-binding protein (Fragment) n=1 Tax=Candidatus Odyssella sp. TaxID=2589116 RepID=A0A8J7N1A3_9PROT)

HSP 1 Score: 155 bits (393), Expect = 2.170e-44
Identity = 88/167 (52.69%), Postives = 106/167 (63.47%), Query Frame = 1
Query:    4 MFACARLGAILVSVNTRFRAHEVADIVSRSGCRMLVLWPDFKAIDFTGILRAIAPDALQALEHVIVYDEADEPAASPV-IAGVPVSTYAALGHSSEDVAPMVGSPLHRCVIFTTSGTTRAPKFVCHVQGTVVRHAHDVASALGMQRVGAKVLQALPLCGVFGYTQAL 501
            +FA   LGA+ V+VNTRFRA E+ADIV RS  R LVLWP FK  DF GIL A+ P AL  LE +++YDE + PA  P  +AG  V  YA L  S+  +A   G+      IFTTSGTT+APKFV H Q ++  HA  VA   G     A +LQALP CGVFG +QAL
Sbjct:   67 LFALGHLGAVAVAVNTRFRAVEIADIVGRSRARALVLWPGFKGADFLGILEAVDPAALDRLEAIVLYDEGEAPAKLPGRLAGKRVLRYADLV-SAPRLAASAGTAASGAAIFTTSGTTKAPKFVLHTQRSLADHARAVAPVFGYGAADAVMLQALPFCGVFGLSQAL 232          
BLAST of mRNA_P-wetherbeei_contig58760.1.1 vs. uniprot
Match: A0A7V8QFT1_9GAMM (AMP-binding protein n=1 Tax=Ectothiorhodospiraceae bacterium WFHF3C12 TaxID=1914406 RepID=A0A7V8QFT1_9GAMM)

HSP 1 Score: 161 bits (407), Expect = 5.900e-44
Identity = 90/170 (52.94%), Postives = 109/170 (64.12%), Query Frame = 1
Query:    7 FACARLGAILVSVNTRFRAHEVADIVSRSGCRMLVLWPDFKAIDFTGILRAIAPDALQALEHVIVY-DEADEPAASPVIAGVPVSTYAALGHSSEDVAPMV----GSPLHRCVIFTTSGTTRAPKFVCHVQGTVVRHAHDVASALGMQRVGAKVLQALPLCGVFGYTQAL 501
            FACAR+GA+ V++NTRFR+ EV DIV RSGCR+LVLWP FK IDF+GIL  +  DAL+++E VIV   +AD P+  P   G PV  Y  L     D AP +    G P   C IFTTSGTT APKFV H Q  +V HA +V    G  R  A +LQ LP CG FG+ QA+
Sbjct:   72 FACARVGAVAVALNTRFRSAEVEDIVGRSGCRVLVLWPGFKDIDFSGILAGVDADALKSVERVIVCRQDADAPSPLP---GRPVHHYGTL-----DAAPPLQSERGGPDSPCTIFTTSGTTSAPKFVLHKQSVIVHHAREVVRGHGYDRPDAVLLQILPFCGAFGHAQAM 233          
BLAST of mRNA_P-wetherbeei_contig58760.1.1 vs. uniprot
Match: A0A7Y0RB88_9GAMM (AMP-binding protein n=1 Tax=Marinobacter orientalis TaxID=1928859 RepID=A0A7Y0RB88_9GAMM)

HSP 1 Score: 157 bits (396), Expect = 2.090e-42
Identity = 84/169 (49.70%), Postives = 104/169 (61.54%), Query Frame = 1
Query:    1 LMFACARLGAILVSVNTRFRAHEVADIVSRSGCRMLVLWPDFKAIDFTGILRAIAPDALQALEHVIVYDEA--DEPAASPVIAGVPVSTYAALGHSSEDVAPMVGSPLHRCVIFTTSGTTRAPKFVCHVQGTVVRHAHDVASALGMQRVGAKVLQALPLCGVFGYTQAL 501
            L FACARLGAI V+VNTRFR+ EV D V RSGC+M+VLWP+FK IDF  ILR +    L+A+EH++   +   D P   P  A  P    +A     +D     G+P   C IFTTSGTT APKFV H Q  +  HA D A+AL ++  G  +LQ LP CG FG +Q L
Sbjct:   59 LYFACARLGAIAVAVNTRFRSSEVGDTVGRSGCKMIVLWPNFKEIDFVAILRDVETGMLEAVEHIVACRQTGKDTPEILPGRAHCPFEELSACAPIEQDH----GTPDSSCTIFTTSGTTSAPKFVLHKQSALTSHARDTAAALDLEMPGVTLLQVLPFCGTFGLSQFL 223          
BLAST of mRNA_P-wetherbeei_contig58760.1.1 vs. uniprot
Match: A0A0S8B9A8_9PROT (Uncharacterized protein n=1 Tax=Betaproteobacteria bacterium SG8_39 TaxID=1703390 RepID=A0A0S8B9A8_9PROT)

HSP 1 Score: 155 bits (392), Expect = 1.060e-41
Identity = 93/172 (54.07%), Postives = 108/172 (62.79%), Query Frame = 1
Query:    7 FACARLGAILVSVNTRFRAHEVADIVSRSGCRMLVLWPDFKAIDFTGILRAIA---PDALQALEHVIVYDEADEPAASPVIAGVPVSTYAALGHSS----EDVAPMVGSPLHRCVIFTTSGTTRAPKFVCHVQGTVVRHAHDVASALGMQRVGAKVLQALPLCGVFGYTQAL 501
            FACA+LGAI VSVNTRFRAHEVADIV RSG R+LV WP FK IDF+ IL   A   P AL A+  ++ Y E D   A   +AG PV  + AL   S    +D AP  G     C++FTTSGTTRAPKFV   Q  VV HAHDVA   G+    A +L   PLCGVFG+  A+
Sbjct:   78 FACAQLGAIAVSVNTRFRAHEVADIVGRSGARLLVYWPGFKGIDFSSILAEAADTAPSALGAIVALVAYGE-DAAPAPRTVAGKPVLPFGALTAGSPRERDDAAPDAG-----CILFTTSGTTRAPKFVLLDQRAVVAHAHDVAQGFGLDAEAAMLLVP-PLCGVFGFCCAM 242          
BLAST of mRNA_P-wetherbeei_contig58760.1.1 vs. uniprot
Match: A0A521XC46_9PROT (Acyl-CoA synthetase n=1 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A521XC46_9PROT)

HSP 1 Score: 149 bits (376), Expect = 1.880e-39
Identity = 85/169 (50.30%), Postives = 107/169 (63.31%), Query Frame = 1
Query:    4 MFACARLGAILVSVNTRFRAHEVADIVSRSGCRMLVLWPDFKAIDFTGILRAIAPDALQALEHVIVYDEADEPAASPVIAGVPVSTYAAL-GHS--SEDVAPMVGSPLHRCVIFTTSGTTRAPKFVCHVQGTVVRHAHDVASALGMQRVGAKVLQALPLCGVFGYTQAL 501
            +FACARLG I V+VNTRF++ E+ADIV RSG ++L+ WP FK IDF GIL A+   AL  +   I Y E D P  +  + G PV  Y  + GH+   ED A   GS    CVIFTTSGTT+APKFV H    ++RHA DVA+  G+      VL A+P CGV G+ QA+
Sbjct:   70 LFACARLGVIAVAVNTRFKSGEIADIVGRSGAKVLIFWPGFKEIDFAGILGAVDAAALGRVTAYIAYQEDDRPPPA-YLRGKPVYAYRNMAGHAPLGEDRATR-GSG---CVIFTTSGTTKAPKFVLHCHAAILRHAQDVATGFGLSASDTVVLPAVPFCGVGGFCQAM 233          
BLAST of mRNA_P-wetherbeei_contig58760.1.1 vs. uniprot
Match: A0A2E5PMK1_9PROT (Uncharacterized protein n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A2E5PMK1_9PROT)

HSP 1 Score: 149 bits (376), Expect = 2.100e-39
Identity = 85/167 (50.90%), Postives = 104/167 (62.28%), Query Frame = 1
Query:    1 LMFACARLGAILVSVNTRFRAHEVADIVSRSGCRMLVLWPDFKAIDFTGILRAIAPDALQALEHVIVYDEADEPAASPVIAGVPVSTYAALGHSSEDVAPMVGSPLHRCVIFTTSGTTRAPKFVCHVQGTVVRHAHDVASALGMQRVGAKVLQALPLCGVFGYTQAL 501
            L FACARLGAI V+VN RFRA EV DIV RSG ++LVLWPDF+ IDF GIL  + PDAL+ +E VIVY E+D+  A  V+    V+      H+  D    V  P   C IFTTSGTT+APKFV H    + +HA +VA    + +        LP CGVFG+ QAL
Sbjct:   76 LYFACARLGAIAVAVNIRFRASEVGDIVGRSGAKVLVLWPDFRGIDFPGILADVDPDALKRVETVIVYSESDDVPAVSVLGARTVTWDRLARHARFDGDFSV--PNGGCNIFTTSGTTKAPKFVLHGHTGITQHAIEVAYHCDLLKPDTVAYLGLPFCGVFGFCQAL 240          
BLAST of mRNA_P-wetherbeei_contig58760.1.1 vs. uniprot
Match: A0A1F3YCU9_9PROT (Uncharacterized protein n=1 Tax=Betaproteobacteria bacterium RBG_16_66_20 TaxID=1797479 RepID=A0A1F3YCU9_9PROT)

HSP 1 Score: 149 bits (375), Expect = 2.480e-39
Identity = 85/170 (50.00%), Postives = 109/170 (64.12%), Query Frame = 1
Query:   10 ACARLGAILVSVNTRFRAHEVADIVSRSGCRMLVLWPDFKAIDFTGILRAIAPDALQALEHVIVYDEADEPAASP--VIAGVPVSTYAALGHSS----EDVAPMVGSPLHRCVIFTTSGTTRAPKFVCHVQGTVVRHAHDVASALGMQRVGAKVLQALPLCGVFGYTQAL 501
            ACA+LGA+ VSVNTRFR+HE+ADI+ RS  R+L+ WP FK IDF+GIL    P AL+ L+ V++YDEA    A+P   + G    +Y  L   +    +D AP  G     C IFTTSGTT+APKFV H Q TV+RHA DV  A  +    A +L A PLCGV+G+  A+
Sbjct:   71 ACAQLGAVAVSVNTRFRSHELADILQRSRSRVLLFWPGFKGIDFSGILGNCDPQALEHLQSVVIYDEAG---ANPPGALLGKAALSYMLLSGGAPLLQDDAAPGAG-----CAIFTTSGTTKAPKFVLHDQRTVIRHAMDVVKAFSIDSDAAMLL-APPLCGVYGFCSAM 231          
BLAST of mRNA_P-wetherbeei_contig58760.1.1 vs. uniprot
Match: A0A2E4UTA8_9GAMM (Acyl-CoA synthetase n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A2E4UTA8_9GAMM)

HSP 1 Score: 146 bits (369), Expect = 2.040e-38
Identity = 81/166 (48.80%), Postives = 108/166 (65.06%), Query Frame = 1
Query:    7 FACARLGAILVSVNTRFRAHEVADIVSRSGCRMLVLWPDFKAIDFTGILRAIAPDALQALEHVIVYDEA-DEPAASPVIAGVPVSTYAALGHSSEDVAPMV---GSPLHRCVIFTTSGTTRAPKFVCHVQGTVVRHAHDVASALGMQRVGAKVLQALPLCGVFGYT 492
            FA A+LGAI V+VNTR+RA EVADIVSRSG + ++LWP F+ IDF  IL    P AL+ LE +I+Y E   +P    +  G PV ++  L     D+AP +   G+P+H C +FTTSGTT APKFV H Q ++V HA+++ S +        +LQ LP CGVFG+T
Sbjct:   71 FASAQLGAIAVAVNTRYRAKEVADIVSRSGAKTMILWPGFRGIDFLTILEDXPPTALERLETLILYSEGPQQPDVXXLXQGKPVRSWEEL----TDMAPYMSDKGTPIHGCNMFTTSGTTSAPKFVXHNQRSIVAHANELWSNMTTLIGDGALLQTLPFCGVFGFT 232          
BLAST of mRNA_P-wetherbeei_contig58760.1.1 vs. uniprot
Match: A0A382AN44_9ZZZZ (AMP-binding domain-containing protein (Fragment) n=1 Tax=marine metagenome TaxID=408172 RepID=A0A382AN44_9ZZZZ)

HSP 1 Score: 142 bits (358), Expect = 2.570e-38
Identity = 80/168 (47.62%), Postives = 95/168 (56.55%), Query Frame = 1
Query:    1 LMFACARLGAILVSVNTRFRAHEVADIVSRSGCRMLVLWPDFKAIDFTGILRAIAPDALQALEHVIVY-DEADEPAASPVIAGVPVSTYAALGHSSEDVAPMVGSPLHRCVIFTTSGTTRAPKFVCHVQGTVVRHAHDVASALGMQRVGAKVLQALPLCGVFGYTQAL 501
            L  ACAR+GAI VSVNTRFRA EV DIV R+GCR L LWP FK I F   L  I   AL  LE +I+Y D+   P+    +AG  V  Y  L  + E        P    V+FTTSGTT APKFV H   ++  HA DV    G       +LQ +PLCG FG+ QA+
Sbjct:   79 LHIACARIGAITVSVNTRFRAREVGDIVGRAGCRALALWPSFKDIPFLQTLGEIESAALATLESIIIYGDDQPVPSLPGTLAGRSVVDYQELADTEEFTGDFA-QPEGGVVVFTTSGTTAAPKFVLHSHASIACHADDVTQFFGWSEPDTVILQVVPLCGTFGHAQAM 245          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig58760.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S8C5D7_9HYPH3.240e-4552.44AMP-binding protein n=1 Tax=Kaustia mangrovi TaxID... [more]
A0A8J7N1A3_9PROT2.170e-4452.69AMP-binding protein (Fragment) n=1 Tax=Candidatus ... [more]
A0A7V8QFT1_9GAMM5.900e-4452.94AMP-binding protein n=1 Tax=Ectothiorhodospiraceae... [more]
A0A7Y0RB88_9GAMM2.090e-4249.70AMP-binding protein n=1 Tax=Marinobacter orientali... [more]
A0A0S8B9A8_9PROT1.060e-4154.07Uncharacterized protein n=1 Tax=Betaproteobacteria... [more]
A0A521XC46_9PROT1.880e-3950.30Acyl-CoA synthetase n=1 Tax=Betaproteobacteria bac... [more]
A0A2E5PMK1_9PROT2.100e-3950.90Uncharacterized protein n=1 Tax=Rhodospirillaceae ... [more]
A0A1F3YCU9_9PROT2.480e-3950.00Uncharacterized protein n=1 Tax=Betaproteobacteria... [more]
A0A2E4UTA8_9GAMM2.040e-3848.80Acyl-CoA synthetase n=1 Tax=Gammaproteobacteria ba... [more]
A0A382AN44_9ZZZZ2.570e-3847.62AMP-binding domain-containing protein (Fragment) n... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig58760contigP-wetherbeei_contig58760:3..503 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog1216976.AX27061_2295
Preferred namehcl
PFAMsAMP-binding,AMP-binding_C
Model size501
Max annot lvl28216|Betaproteobacteria
KEGG koko:K00666
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.21e-35
EggNOG OGsCOG0318@1|root,COG0318@2|Bacteria,1R6HT@1224|Proteobacteria,2VQR4@28216|Betaproteobacteria,3T58A@506|Alcaligenaceae
DescriptionAcyl-CoA synthetases (AMP-forming) AMP-acid ligases II
Cds size498
COG categoryIQ
BRITEko00000,ko01000,ko01004
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186869.3341393-CDS-P-wetherbeei_contig58760:2..5001683186869.3341393-CDS-P-wetherbeei_contig58760:2..500Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig58760 3..500 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186869.3504891-UTR-P-wetherbeei_contig58760:500..5031683186869.3504891-UTR-P-wetherbeei_contig58760:500..503Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig58760 501..503 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig58760.1.1prot_P-wetherbeei_contig58760.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig58760 3..500 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig58760.1.1

>prot_P-wetherbeei_contig58760.1.1 ID=prot_P-wetherbeei_contig58760.1.1|Name=mRNA_P-wetherbeei_contig58760.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=166bp
MFACARLGAILVSVNTRFRAHEVADIVSRSGCRMLVLWPDFKAIDFTGIL
RAIAPDALQALEHVIVYDEADEPAASPVIAGVPVSTYAALGHSSEDVAPM
VGSPLHRCVIFTTSGTTRAPKFVCHVQGTVVRHAHDVASALGMQRVGAKV
LQALPLCGVFGYTQAL
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mRNA from alignment at P-wetherbeei_contig58760:3..503-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig58760.1.1 ID=mRNA_P-wetherbeei_contig58760.1.1|Name=mRNA_P-wetherbeei_contig58760.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=501bp|location=Sequence derived from alignment at P-wetherbeei_contig58760:3..503- (Phaeothamnion wetherbeei SAG_119_79)
CTGATGTTTGCCTGTGCACGCCTGGGCGCCATTCTGGTGTCGGTCAACAC CCGCTTTCGCGCCCACGAGGTGGCGGACATCGTGTCGCGCTCGGGCTGTC GCATGCTGGTGCTGTGGCCGGATTTCAAGGCCATCGACTTCACTGGCATC CTGCGCGCGATCGCACCTGACGCACTGCAAGCTCTGGAGCATGTCATCGT CTATGACGAAGCCGACGAGCCTGCTGCCAGCCCGGTGATTGCTGGCGTGC CGGTCAGCACCTACGCGGCGCTCGGCCACAGCAGCGAAGACGTGGCGCCA ATGGTCGGCAGCCCGCTACATCGCTGCGTGATCTTTACTACCTCGGGTAC CACCAGGGCGCCAAAATTCGTTTGTCACGTACAGGGCACGGTGGTGCGTC ACGCCCACGACGTCGCGTCTGCCTTGGGCATGCAGCGGGTCGGCGCCAAG GTCTTGCAGGCATTACCCTTGTGCGGCGTATTCGGCTACACCCAGGCGCT T
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Coding sequence (CDS) from alignment at P-wetherbeei_contig58760:3..503-

>mRNA_P-wetherbeei_contig58760.1.1 ID=mRNA_P-wetherbeei_contig58760.1.1|Name=mRNA_P-wetherbeei_contig58760.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=498bp|location=Sequence derived from alignment at P-wetherbeei_contig58760:3..503- (Phaeothamnion wetherbeei SAG_119_79)
ATGTTTGCCTGTGCACGCCTGGGCGCCATTCTGGTGTCGGTCAACACCCG
CTTTCGCGCCCACGAGGTGGCGGACATCGTGTCGCGCTCGGGCTGTCGCA
TGCTGGTGCTGTGGCCGGATTTCAAGGCCATCGACTTCACTGGCATCCTG
CGCGCGATCGCACCTGACGCACTGCAAGCTCTGGAGCATGTCATCGTCTA
TGACGAAGCCGACGAGCCTGCTGCCAGCCCGGTGATTGCTGGCGTGCCGG
TCAGCACCTACGCGGCGCTCGGCCACAGCAGCGAAGACGTGGCGCCAATG
GTCGGCAGCCCGCTACATCGCTGCGTGATCTTTACTACCTCGGGTACCAC
CAGGGCGCCAAAATTCGTTTGTCACGTACAGGGCACGGTGGTGCGTCACG
CCCACGACGTCGCGTCTGCCTTGGGCATGCAGCGGGTCGGCGCCAAGGTC
TTGCAGGCATTACCCTTGTGCGGCGTATTCGGCTACACCCAGGCGCTT
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