mRNA_P-wetherbeei_contig1262.3.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1262.3.1
Unique NamemRNA_P-wetherbeei_contig1262.3.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig1262.3.1 vs. uniprot
Match: A0A835Z7N1_9STRA (HIGH-chlorophyll-fluorescence 101 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z7N1_9STRA)

HSP 1 Score: 560 bits (1443), Expect = 4.140e-189
Identity = 337/601 (56.07%), Postives = 388/601 (64.56%), Query Frame = 3
Query:  252 VLEALATVIDPDLGQDIVTLGFVQQLQIVEGSAGAEVSFNVELTTPACPVKEQFREQCKSLVEALPGVSRVDVTMTAQPPRPADEGVATGMSRVSNIIAVSSCKGGVGKSTTAVNLAFALHRQGARVGILDADIHGPSLPTMVRPETREVEFEGNQIKPLEARGVKLMSYGFVNPGAAAIMRGPMVVQLLQQFVGLTSWGELDYLVIDMPPGTGDIQLTLCQVLNITAAVVVTTPQRLSFTDVVKGIDMFDVVNVPSVAVVENMAYYEEETDEXXXXTAETDGTAKFSASGLPDADVLVARVKEVFGLRGDELRERAFGTLPGADSFNLSESTNPVVLQENSLRELLVTRAVQEXXXXXXXXXXXXXXXXXXXAGPLKRRYLFGRGHSARLADMWGIENTVQMPLAADIARLGDSGVPVVVAAPDGPHAAAYGALATAVVQEVAKLRHGGSGRPQLRYDEAEHAIVVEVAAPSGVAAAAAAVEGGETATGSAVVAPXXXXXXXXXXXXXXXXAAATPPSRGLRLLQAVRPAALRRACRCAVCVEELTGRPLLRPEDVSDDVKPTDFAPVGNYAVAIGWSDGHRSLYPYAAFIDEYGGRRRR 2054
            VL+AL  +IDPDLGQDIVTLGF+++L I   +AGA VSF VELTTPACPVKE F+ QC++ VEALP V+   VTMTAQP    ++ + TG+SRV NIIAVSSCKGGVGKSTTAVNLAFAL   GARVGILDADI+GPSLPTMVRP+   VEF GN+IKPLEARGVKLMSYG+VN GAA IMRGPMVVQLLQQFV LTSWG+LDYL+IDMPPGTGDIQLTLCQ LNITAAV+VTTPQRLSF DVVKGIDMFD VN+PS+AVVENMAYY E                        D D L      + G         + G +P AD+  L               + LV  A                      A    +R +FGRGHS RLADMWG+ N V+MPL AD+A  GD+GVP VVA  DG HAA Y  LA +VV+EVAK+R+G + RP + YDEA H I ++    +G AAAAAA                                              V PAALRRACRCA CVEELTGRPLL P  V   V+P  FAP+GNYAV++ WSDGH+SLYPYA+F++ Y GRRRR
Sbjct:   83 VLDALKVIIDPDLGQDIVTLGFIKELAI--DAAGA-VSFCVELTTPACPVKELFKTQCQTAVEALPWVASTAVTMTAQPVSE-NKQLPTGLSRVQNIIAVSSCKGGVGKSTTAVNLAFALQSSGARVGILDADIYGPSLPTMVRPDKDVVEFVGNEIKPLEARGVKLMSYGYVNEGAA-IMRGPMVVQLLQQFVTLTSWGDLDYLLIDMPPGTGDIQLTLCQNLNITAAVIVTTPQRLSFADVVKGIDMFDAVNIPSIAVVENMAYYNE-----------------------VDVDALADAAARLVG---------SSGAMP-ADAEQL---------------QALVRSAA---------------------AAATTQRQVFGRGHSKRLADMWGMTNVVRMPLHADVAAAGDAGVPFVVAHADGEHAALYRELAESVVREVAKIRYGRAARPHVAYDEARHLITID----AGAAAAAAAT---------------------------------------------VEPAALRRACRCAACVEELTGRPLLDPASVPAGVRPLGFAPIGNYAVSVDWSDGHKSLYPYASFVEGYQGRRRR 560          
BLAST of mRNA_P-wetherbeei_contig1262.3.1 vs. uniprot
Match: A0A6H5K9N8_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K9N8_9PHAE)

HSP 1 Score: 534 bits (1376), Expect = 7.820e-179
Identity = 305/596 (51.17%), Postives = 376/596 (63.09%), Query Frame = 3
Query:  252 VLEALATVIDPDLGQDIVTLGFVQQLQIVEGSAGAEV-SFNVELTTPACPVKEQFREQCKSLVEALPGVSRVDVTMTAQPPRPADEGVATGMSRVSNIIAVSSCKGGVGKSTTAVNLAFALHRQGARVGILDADIHGPSLPTMVRPETREVEFEGNQIKPLEARGVKLMSYGFVNPGAAAIMRGPMVVQLLQQFVGLTSWGELDYLVIDMPPGTGDIQLTLCQVLNITAAVVVTTPQRLSFTDVVKGIDMFDVVNVPSVAVVENMAYYEEETDEXXXXTAETDGTAKFSASGLPDADVLVARVKEVFGLRGDELRERAFGTLPGADSFNLSESTNPVVLQENSLRELLVTRAVQEXXXXXXXXXXXXXXXXXXXAGPLKRRYLFGRGHSARLADMWGIENTVQMPLAADIARLGDSGVPVVVAAPDGPHAAAYGALATAVVQEVAKLRHGGSGRPQLRYDEAEHAIVVEVAAPSGVAAAAAAVEGGETATGSAVVAPXXXXXXXXXXXXXXXXAAATPPSRGLRLLQAVRPAALRRACRCAVCVEELTGRPLLRPEDVSDDVKPTDFAPVGNYAVAIGWSDGHRSLYPYAAFIDEY 2036
            VL  L+ V+DPDL  DIV+LGF+++L+I     G +V +F+VELTTPACPVK QF++ C+ LVEALP V R +VTMTAQP R   + V TG+S+V+ IIAVSSCKGGVGKSTTAVNLA+AL +QGA+VGILDADI+GPSLPTMV+P+  EVEF GNQI+P+ A GVKLMSYGFVN GAA IMRGPMV QLL QFV LTSWGELDYLVIDMPPGTGDIQLTLCQVLNITAAV+VTTPQ+LSFTDVVKGID+FD VNVPSVAVVENMAYY+   D+    T                   L + ++++  L  DEL   A             E        E +LR  ++   +++                   A   +R Y+FG+GH  RLADMWGI NT++MPL AD+A  GDSG+P VV+ PD  H+ ++  LA AVV+EVAKL+   + RP L +  AE  +++E +    V AAA                                                     LRR CRCA+CVEE +G+PLL P  V +++ PT+FAP+GNYAV++ W DGH SLYPY  F   Y
Sbjct:   80 VLAVLSAVMDPDLSMDIVSLGFIKELEISGEDEGRQVVTFDVELTTPACPVKAQFQQDCRDLVEALPWVDRAEVTMTAQPVRDVSDTVPTGLSKVATIIAVSSCKGGVGKSTTAVNLAYALDKQGAKVGILDADIYGPSLPTMVKPDREEVEFVGNQIRPMTAHGVKLMSYGFVNQGAA-IMRGPMVSQLLSQFVTLTSWGELDYLVIDMPPGTGDIQLTLCQVLNITAAVIVTTPQKLSFTDVVKGIDLFDTVNVPSVAVVENMAYYDA-VDQTAFKTG------------------LESNIEDLLTLDSDELSAAA-----------AREGLASPPQDETALRAAVIAEVMKKR------------------ASTKQREYIFGKGHQMRLADMWGITNTIRMPLVADVASSGDSGIPFVVSKPDSDHSESFSQLAEAVVREVAKLKFSDNDRPMLSFQPAEGTVMIETSGGKQVMAAAD----------------------------------------------------LRRQCRCALCVEEFSGKPLLDPASVPENIVPTEFAPIGNYAVSVKWDDGHSSLYPYKNFAKGY 574          
BLAST of mRNA_P-wetherbeei_contig1262.3.1 vs. uniprot
Match: W7U767_9STRA (Uncharacterized protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7U767_9STRA)

HSP 1 Score: 479 bits (1234), Expect = 8.080e-157
Identity = 289/613 (47.15%), Postives = 370/613 (60.36%), Query Frame = 3
Query:  252 VLEALATVIDPDLGQDIVTLGFVQQLQIVEGSAGAEVSFNVELTTPACPVKEQFREQCKSLVEALPGVSRVDVTMTAQP----PRPADEGVATGMSRVSNIIAVSSCKGGVGKSTTAVNLAFALHRQGARVGILDADIHGPSLPTMVRPETREVEFEGNQIKPL----------EARGVKLMSYGFVNPGAAAIMRGPMVVQLLQQFVGLTSWGELDYLVIDMPPGTGDIQLTLCQVLNITAAVVVTTPQRLSFTDVVKGIDMFDVVNVPSVAVVENMAYYEEETDEXXXXTAETDGTAKFSASGLPDADVLVARVKEVFGLRGDELRERAFGTLPGADSFNLSEST---NPVVLQENSLRELLVTRAVQEXXXXXXXXXXXXXXXXXXXAGPLKRRYLFGRGHSARLADMWGIENTVQMPLAADIARLGDSGVPVVVAAPDGPHAAAYGALATAVVQEVAKLRHGGSG-RPQLRYDEAEHAIVVEVAAPSGVAAAAAAVEGGETATGSAVVAPXXXXXXXXXXXXXXXXAAATPPSRGLRLLQAVRPAALRRACRCAVCVEELTGRPLLRPEDVSDDVKPTDFAPVGNYAVAIGWSDGHRSLYPYAAFIDEY 2036
            V+  L  V+DPDLG D+VTLGF++ L I +G+ G  VSF +ELTTPACPVK+  + Q   +VE LP V++ DV ++A+P         +  ATG+S V+N+IAVSSCKGGVGKSTTAVNLAFAL RQGA+VGILDADI+GPSLPTMV P+T  VEF  +QI+P+          + +GVKLMS+G+VNPGAAA+MRGPMV+QL+ Q + LTSWGELDYLVIDMPPGTGDI LTLCQ LNITAAV+VTTPQRLSFTDVVKG+DMFD VNVP VAVVENMAY                  A  SA    D+   + R   V G     LR+     L   D     +     + + + +  LRE  + R                               LFG+GH  RLADMWG++NTV +P+  ++++ GDSG P++V+ PD   A  +  LA  VV+EVAKLR+  S  RP + Y   EH I V +   +G+                                     +  +PP       Q + PAALRR CRCA+CVEE+TGR LL+PE +++D+KP +   VGNYA+ I W+DGH+SL+PY +F+D Y
Sbjct:   98 VVTQLRQVMDPDLGSDVVTLGFIKNLTI-DGATG-RVSFVLELTTPACPVKDDLKAQAMQVVETLPWVTKADVILSARPITAEKSAGGDMKATGLSLVNNVIAVSSCKGGVGKSTTAVNLAFALDRQGAKVGILDADIYGPSLPTMVAPDTEMVEFVESQIRPMIRQTGLDAEGQPKGVKLMSFGYVNPGAAAVMRGPMVIQLINQLLTLTSWGELDYLVIDMPPGTGDIPLTLCQSLNITAAVIVTTPQRLSFTDVVKGVDMFDTVNVPCVAVVENMAY------------------ADVSALDYVDSREDMNRNGGVAGA-WQRLRQDIEDVLEDEDGIRTGKGAVVDDLITVVQRRLREDRIARP------------------------------LFGQGHRQRLADMWGLDNTVSLPVLEEVSKSGDSGTPLLVSEPDSSSAQIFMDLAGRVVREVAKLRYDRSRLRPSVTYLPVEHVIAVTLHGAAGLT------------------------------DDGRMESDISPP-------QKIAPAALRRQCRCAMCVEEMTGRQLLQPETIAEDIKPVEIGAVGNYAIGITWTDGHKSLFPYRSFVDGY 622          
BLAST of mRNA_P-wetherbeei_contig1262.3.1 vs. uniprot
Match: A0A6U3BX58_9STRA (Hypothetical protein n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A6U3BX58_9STRA)

HSP 1 Score: 447 bits (1151), Expect = 1.590e-145
Identity = 285/616 (46.27%), Postives = 348/616 (56.49%), Query Frame = 3
Query:  198 ATGAAADDKGTTSPFEPLVLEALATVIDPDLGQDIVTLGFVQQLQIVEGSAGAEVSFNVELTTPACPVKEQFREQCKSLVEALPGVSRVDVTMTAQPPRPADEGVATGMSRVSNIIAVSSCKGGVGKSTTAVNLAFALHRQGARVGILDADIHGPSLPTMVRPETREVEFEGNQIKPLEARGVKLMSYGFVNPGAAAIMRGPMVVQLLQQFVGLTSWGELDYLVIDMPPGTGDIQLTLCQVLNITAAVVVTTPQRLSFTDVVKGIDMFDVVNVPSVAVVENMAYYEEETDEXXXXTAETDGTAKFSASGLPDADVLVARVKEVFGLRGDELRERAFGTLPGADSFNLSESTNPVVLQENSLRELLVTRAVQEXXXXXXXXXXXXXXXXXXXAGPLKRRYLFGRGHSARLADMWGIENTVQMPLAADIARLGDSGVPVVVAAPDGPHAAAYGALATAVVQEVAKLRHGG-SGRPQLRYDEAEHAIVVEVAAPSGVAAAAAAVEGGETATGSAVVAPXXXXXXXXXXXXXXXXAAATPPSRGLRLLQAVRPAALRRACRCAVCVEELTGRPLLRPEDVSDDVKPTDFAPVGNYAVAIGWSDGHRSLYPYA---AFIDE 2033
            AT ++  D    + ++  VL  L TVIDPDLG DIVTLGFVQ L++   S    +SF+VELTTPACPVK+QF   C+ LVE LP    V VTMTAQ    + E    GM ++  +IAVSSCKGGVGKSTT+VNLAFAL   GA VGI DAD++GPSLPTMV P+   V F G QI PL+  GVKLMS+G+VN G+A +MRGPMV QLL QF+ +T WG LDYL+IDMPPGTGDIQLTL Q LNITAAV+VTTPQ LSF DVV+G++MFD VNVPSVAVVENMAYYE             D   K    GL  A                +L +    T  G+    LSE    VVL+  SL+    +  VQ                            +FG GH  RL++ +GIE+T  +PL   IA  GDSG P ++  PD P AA Y  LA +VV+EVAK +  G + RP + +D+  H +VV                      G +V+ P                                  A LRR CRCA CVEELTGR +L P  VS+++ P    P GNYA+++ WSDGHRSLYPY    A +DE
Sbjct:   44 ATSSSEQDVAIPTEWQGEVLGQLKTVIDPDLGSDIVTLGFVQNLKLEPESR--TISFDVELTTPACPVKDQFAADCQKLVEDLPWTGDVQVTMTAQ--ESSSETETFGMKQIGAVIAVSSCKGGVGKSTTSVNLAFALQSIGASVGIFDADVYGPSLPTMVTPDDDIVRFVGRQIAPLQRNGVKLMSFGYVNDGSA-VMRGPMVTQLLDQFLSVTQWGSLDYLIIDMPPGTGDIQLTLTQKLNITAAVIVTTPQELSFADVVRGVEMFDSVNVPSVAVVENMAYYE------------VDKQPKVDREGLKAA-------------MAQQLTKAGVETNGGSKVDELSEDLVSVVLE--SLQANSESEKVQ----------------------------IFGSGHKQRLSEQYGIEHTFSVPLLDRIAANGDSGQPYILEHPDSPQAAIYKDLAKSVVKEVAKAKFSGQNSRPDVVFDKEAHKMVVN---------------------GKSVLTP----------------------------------AGLRRGCRCAACVEELTGRQILIPTMVSENIAPLRMTPTGNYALSVDWSDGHRSLYPYRQIQALVDE 544          
BLAST of mRNA_P-wetherbeei_contig1262.3.1 vs. uniprot
Match: A0A7S4IVR1_9STRA (Hypothetical protein n=4 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4IVR1_9STRA)

HSP 1 Score: 447 bits (1151), Expect = 1.640e-144
Identity = 276/599 (46.08%), Postives = 354/599 (59.10%), Query Frame = 3
Query:  252 VLEALATVIDPDLGQDIVTLGFVQQLQIVEGSAGAEVSFNVELTTPACPVKEQFREQCKSLVEALPGVSRVDVTMTAQPPRPADEGVATGMSRVSNIIAVSSCKGGVGKSTTAVNLAFALHRQGARVGILDADIHGPSLPTMVRPETREVEFEGNQIKPLEARGVKLMSYGFVNPGAAAIMRGPMVVQLLQQFVGLTSWGELDYLVIDMPPGTGDIQLTLCQVLNITAAVVVTTPQRLSFTDVVKGIDMFDVVNVPSVAVVENMAYYEEETDEXXXXTAETD---------GTAKFSASGLPDADVLVARVKEVFGLRGDELRERAFGTLPGADSFNLSESTNPVVLQENSLRELLVTRAVQEXXXXXXXXXXXXXXXXXXXAGPLKRRY-LFGRGHSARLADMWGIENTVQMPLAADIARLGDSGVPVVVAAPDGPHAAAYGALATAVVQEVAKLRHG-GSGRPQLRYDEAEHAIVVEVAAPSGVAAAAAAVEGGETATGSAVVAPXXXXXXXXXXXXXXXXAAATPPSRGLRLLQAVRPAALRRACRCAVCVEELTGRPLLRPEDVSDDVKPTDFAPVGNYAVAIGWSDGHRSLYPY 2015
            +L  L++V+DPDL +DIVTLGF++ L++ E +    VSF+VELTTPACPVK+QF   C++LVE L     VDVTMTA P     + +  G+S+V  +IAVSSCKGGVGKSTTAVNLA++L   GA VGI D D++GPSLPTMV P+   V+F G QI PL+  GVKLMS+G+VN G+A +MRGPMV QLL QF+ L +WG LDYL++DMPPGTGDIQLTL Q LNITAAV+VTTPQ LSF DVV+GIDMFD VNVP VAVVENMAYYE +++      A+ +           AK   +G+ D D         FGL+ DEL                +ES   VV +E         R+ +E                   A P K R  +FG GH +RL+D +GIE+T  +PL   IA  GDSG P V++ PD P ++ Y  LA++VV+EV K+++   S RP + +D A+ A+VV+                                                         + + PA LRRACRCA CVEELTGR LL P  +S+ V+P    P GNYA+++ WSDGH+SLYPY
Sbjct:  100 ILSVLSSVVDPDLNRDIVTLGFIKNLELNEHTRA--VSFDVELTTPACPVKDQFEIDCRALVEDLAWTGDVDVTMTAAPSNIDTDSL--GLSQVGAVIAVSSCKGGVGKSTTAVNLAYSLQSLGASVGIFDVDVYGPSLPTMVTPDDDNVQFVGRQIAPLQRNGVKLMSFGYVNEGSA-VMRGPMVTQLLDQFLSLVNWGSLDYLILDMPPGTGDIQLTLSQRLNITAAVIVTTPQELSFADVVRGIDMFDSVNVPCVAVVENMAYYEVDSNGANGEKAKPELDIERLKRKMEAKLRDTGVVDGD---------FGLQVDEL----------------AESLVEVVEKEQ-------LRSAEEASSDDADDD----------ASPTKERIQIFGPGHKSRLSDQYGIEHTYSVPLLDRIAANGDSGDPFVLSHPDAPQSSTYRELASSVVREVGKVKYNRDSSRPVVAFDSAKPAVVVDG--------------------------------------------------------RDISPATLRRACRCAYCVEELTGRQLLDPATISESVRPLKMEPCGNYALSVDWSDGHKSLYPY 595          
BLAST of mRNA_P-wetherbeei_contig1262.3.1 vs. uniprot
Match: A0A448ZMT7_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZMT7_9STRA)

HSP 1 Score: 441 bits (1134), Expect = 1.850e-142
Identity = 273/588 (46.43%), Postives = 336/588 (57.14%), Query Frame = 3
Query:  252 VLEALATVIDPDLGQDIVTLGFVQQLQIVEGSAGAEVSFNVELTTPACPVKEQFREQCKSLVEALPGVSRVDVTMTAQPPRPADEGVATGMSRVSNIIAVSSCKGGVGKSTTAVNLAFALHRQGARVGILDADIHGPSLPTMVRPETREVEFEGNQIKPLEARGVKLMSYGFVNPGAAAIMRGPMVVQLLQQFVGLTSWGELDYLVIDMPPGTGDIQLTLCQVLNITAAVVVTTPQRLSFTDVVKGIDMFDVVNVPSVAVVENMAYYEEETDEXXXXTAETDGTAKFSASGLPDADVLVARVKEVFGLRGDELRERAFGTLPGADSFNLSESTNPVVLQENSLRELLVTRAVQEXXXXXXXXXXXXXXXXXXXAGPLKRRYLFGRGHSARLADMWGIENTVQMPLAADIARLGDSGVPVVVAAPDGPHAAAYGALATAVVQEVAKLRHGGSGRPQLRYDEAEHAIVVEVAAPSGVAAAAAAVEGGETATGSAVVAPXXXXXXXXXXXXXXXXAAATPPSRGLRLLQAVRPAALRRACRCAVCVEELTGRPLLRPEDVSDDVKPTDFAPVGNYAVAIGWSDGHRSLYPY 2015
            VL+ L ++IDPDLGQDIVTLGFVQ L++ E  A  +VSF+VELTTPACPVKE FR  C+ LV ALP V  VDVTMTAQ P   +   + GM+ +  IIAVSSCKGGVGKSTT+VNLA+AL  QGA VGI D D++GPSLPTMV P+   V F G QI PL+  GV+LMS+G++N G+A IMRGPMV QLL QF+ +T WG LDYL++DMPPGTGDIQLTL Q LNITAAV+VTTPQ LSF DVV+G++MFD V+VP VAVVENMAYY+ +                  AS + + D L   V+++   +G          L   D    +E     VL+         T  VQ                            +FG GH  RL+D WGIE+T  MPL   IA  GDSG P V+  P+      Y  LA +VV EVAK +   S RP++ Y E  + I V+                                                         + +  A LRRACRCA CVEELTG+ +L+  DVSDD+KP   +  GNYA+++ WSDGHRSLYPY
Sbjct:   90 VLKTLKSIIDPDLGQDIVTLGFVQNLKLDE--AERKVSFDVELTTPACPVKETFRSDCERLVSALPFVGSVDVTMTAQEPSNTETDTS-GMAGIGAIIAVSSCKGGVGKSTTSVNLAYALQSQGASVGIFDCDVYGPSLPTMVEPDDDMVRFVGRQIAPLQRNGVRLMSFGYINDGSA-IMRGPMVSQLLDQFLSVTQWGSLDYLILDMPPGTGDIQLTLTQRLNITAAVIVTTPQELSFADVVRGVEMFDTVDVPCVAVVENMAYYDSDP-----------------ASQVNNKDELEEDVRKMLAEKG---------LLNNGDGDKFAEELVQTVLKNAK------TDPVQ----------------------------IFGPGHKKRLSDQWGIEHTYSMPLMDRIAANGDSGTPYVLENPESSQTQIYRELAKSVVSEVAKAKFA-SRRPEIEYIEEFNIIQVDD--------------------------------------------------------EPLDSATLRRACRCAACVEELTGKQILKASDVSDDIKPLRMSGTGNYALSVDWSDGHRSLYPY 556          
BLAST of mRNA_P-wetherbeei_contig1262.3.1 vs. uniprot
Match: B5Y591_PHATC (Predicted protein (Fragment) n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B5Y591_PHATC)

HSP 1 Score: 435 bits (1118), Expect = 2.910e-142
Identity = 267/588 (45.41%), Postives = 322/588 (54.76%), Query Frame = 3
Query:  252 VLEALATVIDPDLGQDIVTLGFVQQLQIVEGSAGAEVSFNVELTTPACPVKEQFREQCKSLVEALPGVSRVDVTMTAQPPRPADEGVATGMSRVSNIIAVSSCKGGVGKSTTAVNLAFALHRQGARVGILDADIHGPSLPTMVRPETREVEFEGNQIKPLEARGVKLMSYGFVNPGAAAIMRGPMVVQLLQQFVGLTSWGELDYLVIDMPPGTGDIQLTLCQVLNITAAVVVTTPQRLSFTDVVKGIDMFDVVNVPSVAVVENMAYYEEETDEXXXXTAETDGTAKFSASGLPDADVLVARVKEVFGLRGDELRERAFGTLPGADSFNLSESTNPVVLQENSLRELLVTRAVQEXXXXXXXXXXXXXXXXXXXAGPLKRRYLFGRGHSARLADMWGIENTVQMPLAADIARLGDSGVPVVVAAPDGPHAAAYGALATAVVQEVAKLRHGGSGRPQLRYDEAEHAIVVEVAAPSGVAAAAAAVEGGETATGSAVVAPXXXXXXXXXXXXXXXXAAATPPSRGLRLLQAVRPAALRRACRCAVCVEELTGRPLLRPEDVSDDVKPTDFAPVGNYAVAIGWSDGHRSLYPY 2015
            VL  L +VIDPDLG DIVTLGFVQ L++     G +VSF+VELTTPACPVKEQF+  C+ LV+ LP  + + VTMTAQP     E    GMS+V  +IAVSSCKGGVGKSTTAVNLAF+L R GA VGI DAD++GPSLPTM+ P+   V F G Q+ PL+  GV+LMS+G+VN G+A +MRGPMV QLL QF+ +T WG LDYL++DMPPGTGDIQLTL Q LNITAAV+VTTPQ LSF DVV+G++MFD VNVP +AVVENMAYY                                                               ES +P  +Q                                          +FG GH  RL+  WGIE++  +PL   IA  GD+G P V+  PD P A  Y  LA+AVV EVAK +   S RP ++YD   H + V               + G  +T    V                    AT P           PA LRRACRCA CVEELTGR +L P  VSD + P +  P GNYA+++ WSDGHRSLYPY
Sbjct:    2 VLSTLKSVIDPDLGSDIVTLGFVQNLKL----DGRDVSFDVELTTPACPVKEQFQLDCQQLVQDLPWTNNIQVTMTAQPS--VQETATLGMSQVGAVIAVSSCKGGVGKSTTAVNLAFSLQRLGATVGIFDADVYGPSLPTMITPQDDTVRFVGRQVAPLQRNGVRLMSFGYVNDGSA-VMRGPMVTQLLDQFLSVTHWGALDYLILDMPPGTGDIQLTLTQKLNITAAVIVTTPQELSFADVVRGVEMFDTVNVPCIAVVENMAYY---------------------------------------------------------------ESADPEKIQ------------------------------------------IFGAGHRDRLSQQWGIEHSFSIPLLNKIAANGDNGTPFVLEFPDSPPAKIYQELASAVVSEVAKTKFAKSMRPSVQYDAESHLLQVS--------------QNGVGSTDEEHV--------------------ATLP-----------PAELRRACRCAACVEELTGRQILVPSSVSDKIAPRNMVPTGNYALSVDWSDGHRSLYPY 432          
BLAST of mRNA_P-wetherbeei_contig1262.3.1 vs. uniprot
Match: A0A0G4EPR6_VITBC (Uncharacterized protein n=3 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4EPR6_VITBC)

HSP 1 Score: 438 bits (1127), Expect = 2.420e-140
Identity = 292/633 (46.13%), Postives = 350/633 (55.29%), Query Frame = 3
Query:  255 LEALATVIDPDLGQDIVTLGFVQQLQIVEGSAGAEVSFNVELTTPACPVKEQFREQCKSLVEALPGVSRVDVTMTAQP----PRPAD------EGVATGMSRVSNIIAVSSCKGGVGKSTTAVNLAFALHRQGARVGILDADIHGPSLPTMVRPET-----REVEFEGNQ----IKPLEARGVKLMSYGFVNPGAAAIMRGPMVVQLLQQFVGLTSWGELDYLVIDMPPGTGDIQLTLCQVLNITAAVVVTTPQRLSFTDVVKGIDMFDVVNVPSVAVVENMAYYEEETDEXXXXTAETDGTAKFSASGLPDADVLVARVKEVFGLRGDELRERAFGTLPGADSFNLSESTNPVVLQENSLRELLVTRAVQEXXXXXXXXXXXXXXXXXXXAGPLKRRYLFGRGHSARLADMWGIENTVQMPLAADIARLGDSGVPVVVAAPD----------GPHAA----AYGALATAVVQEVAKLRH--GGSGRPQLRYDEAEHAIVVEVAAPSGVAAAAAAVEGGETATGSAVVAPXXXXXXXXXXXXXXXXAAATPPSRGLRLLQAVRPAALRRACRCAVCVEELTGRPLLRPEDVSDDVKPTDFAPVGNYAVAIGWSDGHRSLYPYAAFIDEYGGRR 2048
            L++L  VIDPDLGQDIVTLGFV+ L I E +    V+  VELTTPACP+K+QFRE   S +E LP V+ VD+T T+QP    P P        +    G SRV  IIAVSSCKGGVGKSTTAVNLAFAL   GA+VGILDAD+HGPSLPTMVRP        EV  E  Q    +KP++  GVKLMS+GF+NP  AA+MRGPMV  LL+QFVG T WGELDYLV+DMPPGTGDIQLTLCQ L+ITAAV+VTTPQRL+FTDVVKGIDMFD VNVP VAVVENMA+    TD+                    D D L   +     +   +LR          D  ++       V +E  +R   V RA++                        KR  LFG+GH  RL+DMWGI+N   +PL   I+R  DSG P V    D          GP        Y  +A +VVQEVAKL+       RP + Y    + +VV             A +G +TA                                       + PA LRR CRCA CVEE TGR LL P  VS+D++PT   PVGNYA+ + WSDGH+S+YPY AF+  Y  RR
Sbjct:   92 LKSLKGVIDPDLGQDIVTLGFVKGLTIDESTGN--VAMTVELTTPACPMKDQFRESITSALEVLPWVNGVDITFTSQPIGTRPSPLSLDGQRQQHAPGGTSRVRAIIAVSSCKGGVGKSTTAVNLAFALKHMGAKVGILDADVHGPSLPTMVRPSEPVVTIEEVPAEDGQTVQILKPIDHDGVKLMSFGFINP-MAAVMRGPMVTNLLKQFVGYTDWGELDYLVVDMPPGTGDIQLTLCQSLDITAAVIVTTPQRLAFTDVVKGIDMFDTVNVPCVAVVENMAHLT--TDDI-------------------DTDRLARDIAAATSMTDQQLR----------DQLSIQNEDGESVGREELVRRC-VDRALRSPDVRRR-----------------KRMQLFGKGHRQRLSDMWGIDNAFSLPLLPSISRASDSGTPFVDTDSDTADSDSETGIGPAEREAKDTYKNIAQSVVQEVAKLQSLSRDKRRPAVLYLSEGNELVV-------------AWQGQQTA---------------------------------------IPPAGLRRKCRCAACVEEGTGRQLLDPSSVSEDIRPTRLEPVGNYALGVDWSDGHKSIYPYRAFVPGYTSRR 620          
BLAST of mRNA_P-wetherbeei_contig1262.3.1 vs. uniprot
Match: R7Q4I6_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7Q4I6_CHOCR)

HSP 1 Score: 421 bits (1081), Expect = 2.180e-135
Identity = 256/599 (42.74%), Postives = 332/599 (55.43%), Query Frame = 3
Query:  252 VLEALATVIDPDLGQDIVTLGFVQQLQIVE--GSAGA-EVSFNVELTTPACPVKEQFREQCKSLVEALPGVSRVDVTMTAQPPRPADEGVATG-MSRVSNIIAVSSCKGGVGKSTTAVNLAFALHRQGARVGILDADIHGPSLPTMVRPETREVEFEGNQIKPLEARGVKLMSYGFVNPGAAAIMRGPMVVQLLQQFVGLTSWGELDYLVIDMPPGTGDIQLTLCQVLNITAAVVVTTPQRLSFTDVVKGIDMFDVVNVPSVAVVENMAYYEEETDEXXXXTAETDGTAKFSASGLPDADVLVARVKEVFGLRGDELRERAFGTLPGADSFNLSESTNPVVLQENSLRELLVTRAVQEXXXXXXXXXXXXXXXXXXXAGPLKRRYLFGRGHSARLADMWGIENTVQMPLAADIARLGDSGVPVVVAAPDGPHAAAYGALATAVVQEVAKLRHGGSGRPQLRYDEAEHAIVVEVAAPSGVAAAAAAVEGGETATGSAVVAPXXXXXXXXXXXXXXXXAAATPPSRGLRLLQAVRPAALRRACRCAVCVEELTGRPLLRPEDVSDDVKPTDFAPVGNYAVAIGWSDGHRSLYPYAAFIDEY 2036
            + +AL+TVIDPDLGQDIVTLGF++ ++  E  G  G  +VSF VELTTPACPVK+ F+  CK L E +  V + +V MTA PP  A+    TG +  +  I+AV+SCKGGVGKSTTAVNLAF+L  +GARVGI+DADI+GPSLPT+V PE R V+F+  +I+PLEA GVKLMS+G+VNP +A IMRGPM+  +L Q +  T WG LDYLVID+PPGTGD+QLTL Q++N+TAAV+VTTPQ+LSF DVVKGIDMFD V+VPSVAVVENM+Y+                         PD  V                                                                                 + ++FG+GH  RL + +GI ++  MP+  +++   DSG+P VVA P    +  Y  LA+AVVQEVAK+++GG G P +++DEA   I V +                                                        Q + PA LRR CRCA+CV+E+TG   L P DVSDDV+P   APVGNYA+ + WSDGH SLYPY+ F++ +
Sbjct:   64 LFKALSTVIDPDLGQDIVTLGFIKDVEFSEVPGLKGMYDVSFKVELTTPACPVKDIFKSDCKRLAEDISFVGKANVIMTAAPPS-ANVPTPTGALDNIGAIVAVASCKGGVGKSTTAVNLAFSLASRGARVGIMDADIYGPSLPTLVEPEERAVQFKDGRIRPLEAHGVKLMSFGYVNPDSA-IMRGPMIANVLNQLLTTTEWGVLDYLVIDLPPGTGDVQLTLSQIINMTAAVIVTTPQKLSFVDVVKGIDMFDKVSVPSVAVVENMSYFV-----------------------APDTGV---------------------------------------------------------------------------------KHHIFGKGHQQRLIEQYGITDSFSMPIDPELSEKSDSGIPYVVANPKSMLSDEYQRLASAVVQEVAKIQYGGLGIPDVQWDEASGNINVRMP--------------------------------------------------NTETTQKIWPATLRRQCRCALCVDEMTGAQKLDPADVSDDVRPMKLAPVGNYALDVLWSDGHPSLYPYSRFVENW 506          
BLAST of mRNA_P-wetherbeei_contig1262.3.1 vs. uniprot
Match: A0A7S2M212_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2M212_9STRA)

HSP 1 Score: 419 bits (1077), Expect = 8.890e-135
Identity = 257/594 (43.27%), Postives = 330/594 (55.56%), Query Frame = 3
Query:  234 SPFEPLVLEALATVIDPDLGQDIVTLGFVQQLQIVEGSAGAEVSFNVELTTPACPVKEQFREQCKSLVEALPGVSRVDVTMTAQPPRPADEGVATGMSRVSNIIAVSSCKGGVGKSTTAVNLAFALHRQGARVGILDADIHGPSLPTMVRPETREVEFEGNQIKPLEARGVKLMSYGFVNPGAAAIMRGPMVVQLLQQFVGLTSWGELDYLVIDMPPGTGDIQLTLCQVLNITAAVVVTTPQRLSFTDVVKGIDMFDVVNVPSVAVVENMAYYEEETDEXXXXTAETDGTAKFSASGLPDADVLVARVKEVFGLRGDELRERAFGTLPGADSFNLSESTNPVVLQENSLRELLVTRAVQEXXXXXXXXXXXXXXXXXXXAGPLKRRYLFGRGHSARLADMWGIENTVQMPLAADIARLGDSGVPVVVAAPDGPHAAAYGALATAVVQEVAKLRHGGSGRPQLRYDEAEHAIVVEVAAPSGVAAAAAAVEGGETATGSAVVAPXXXXXXXXXXXXXXXXAAATPPSRGLRLLQAVRPAALRRACRCAVCVEELTGRPLLRPEDVSDDVKPTDFAPVGNYAVAIGWSDGHRSLYPY 2015
            S ++  +L  L+ +IDPDL  DIV+LGFVQ LQI +      VS ++ LTTPACP+K+ F +QC+ ++  L       VT+TAQ    A      GMS++  +IAVSSCKGGVGKSTTAVNLAFAL   GA+VGI DAD++GPSLPTMV  E  +V F G QI PL+  GV LMS+G+VN G+A +MRGPMV QLL QF+ LT+WG LDYL++DMPPGTGDIQLTL Q LNITAAV+VTTPQ LSF DV +G++MFD VNVP +AVVENMAY+E+E         ET                               LR++    L   D  +  E+   VV   NSL +      VQE                    G ++   +FG+GH  RL++ WGIE+T  +PL + IA+ GDSG P ++  P  P A  Y  LA  V +E +K+    + RP L Y    H I V+               G +  T                                      + PA LRR CRCA CVEELTG+ +L PE + + ++P   +P GNYAV++ WSDGH+SLYPY
Sbjct:   21 SDWQSQILSGLSVIIDPDLDADIVSLGFVQNLQIDDSGI---VSIDLCLTTPACPIKDLFVQQCQDIINGLEFTRGAQVTLTAQQ-NEAPTAAPLGMSQIGAVIAVSSCKGGVGKSTTAVNLAFALQGMGAKVGIFDADVYGPSLPTMVAVEDDKVRFVGRQIAPLKRGGVSLMSFGYVNEGSA-VMRGPMVTQLLDQFLSLTNWGPLDYLILDMPPGTGDIQLTLSQRLNITAAVIVTTPQELSFVDVERGVEMFDTVNVPCIAVVENMAYFEKEKSANVEVDYET-------------------------------LRDKFLQVLKERDGIS-DEAAADVV---NSLID-----TVQENVQNAGK-------------GEMEEIRIFGQGHKRRLSEQWGIEHTFSVPLVSTIAKNGDSGTPFILDNPSSPQADTYKELAKTVARETSKILFSKTSRPNLSYLSEAHVIQVD---------------GMDQGT--------------------------------------LAPAELRRECRCAACVEELTGKQILNPESIPESIRPMSMSPTGNYAVSVDWSDGHKSLYPY 503          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1262.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835Z7N1_9STRA4.140e-18956.07HIGH-chlorophyll-fluorescence 101 n=1 Tax=Tribonem... [more]
A0A6H5K9N8_9PHAE7.820e-17951.17Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
W7U767_9STRA8.080e-15747.15Uncharacterized protein n=2 Tax=Monodopsidaceae Ta... [more]
A0A6U3BX58_9STRA1.590e-14546.27Hypothetical protein n=1 Tax=Amphiprora paludosa T... [more]
A0A7S4IVR1_9STRA1.640e-14446.08Hypothetical protein n=4 Tax=Odontella aurita TaxI... [more]
A0A448ZMT7_9STRA1.850e-14246.43Uncharacterized protein n=1 Tax=Pseudo-nitzschia m... [more]
B5Y591_PHATC2.910e-14245.41Predicted protein (Fragment) n=1 Tax=Phaeodactylum... [more]
A0A0G4EPR6_VITBC2.420e-14046.13Uncharacterized protein n=3 Tax=Vitrella brassicaf... [more]
R7Q4I6_CHOCR2.180e-13542.74Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
A0A7S2M212_9STRA8.890e-13543.27Hypothetical protein n=1 Tax=Skeletonema marinoi T... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1262contigP-wetherbeei_contig1262:3711..6075 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FMK8
PFAMsDUF971,FeS_assembly_P,ParA
Model size2365
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons1
Evalue8.61e-152
EggNOG OGsCOG0489@1|root,KOG3022@2759|Eukaryota
Ec32 ortholog descriptionHCF101 (HIGH-CHLOROPHYLL-FLUORESCENCE 101); ATP binding
Ec32 orthologEc-23_000680.1
DescriptionComponent of the cytosolic iron-sulfur (Fe S) protein assembly (CIA) machinery. Required for maturation of extramitochondrial Fe-S proteins. The NBP35-CFD1 heterotetramer forms a Fe-S scaffold complex, mediating the de novo assembly of an Fe-S cluster and its transfer to target apoproteins
Cds size1692
COG categoryD
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185954.970712-UTR-P-wetherbeei_contig1262:3710..39101683185954.970712-UTR-P-wetherbeei_contig1262:3710..3910Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1262 3711..3910 -
1683185954.9922686-UTR-P-wetherbeei_contig1262:5602..60751683185954.9922686-UTR-P-wetherbeei_contig1262:5602..6075Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1262 5603..6075 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185954.981908-CDS-P-wetherbeei_contig1262:3910..56021683185954.981908-CDS-P-wetherbeei_contig1262:3910..5602Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1262 3911..5602 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1262.3.1prot_P-wetherbeei_contig1262.3.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1262 3911..5602 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1262.3.1

>prot_P-wetherbeei_contig1262.3.1 ID=prot_P-wetherbeei_contig1262.3.1|Name=mRNA_P-wetherbeei_contig1262.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=564bp
MTAQPPRPADEGVATGMSRVSNIIAVSSCKGGVGKSTTAVNLAFALHRQG
ARVGILDADIHGPSLPTMVRPETREVEFEGNQIKPLEARGVKLMSYGFVN
PGAAAIMRGPMVVQLLQQFVGLTSWGELDYLVIDMPPGTGDIQLTLCQVL
NITAAVVVTTPQRLSFTDVVKGIDMFDVVNVPSVAVVENMAYYEEETDEE
TDETAETDGTAKFSASGLPDADVLVARVKEVFGLRGDELRERAFGTLPGA
DSFNLSESTNPVVLQENSLRELLVTRAVQEAMSEAVAAAVAAKAAAKAAA
GPLKRRYLFGRGHSARLADMWGIENTVQMPLAADIARLGDSGVPVVVAAP
DGPHAAAYGALATAVVQEVAKLRHGGSGRPQLRYDEAEHAIVVEVAAPSG
VAAAAAAVEGGETATGSAVVAPAAGVASTAGAGDAAGAAAATPPSRGLRL
LQAVRPAALRRACRCAVCVEELTGRPLLRPEDVSDDVKPTDFAPVGNYAV
AIGWSDGHRSLYPYAAFIDEYGGRRRRARGLDDEELAGRPAAAAAADLQT
QPRTERQSEPAPV*
back to top

mRNA from alignment at P-wetherbeei_contig1262:3711..6075-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1262.3.1 ID=mRNA_P-wetherbeei_contig1262.3.1|Name=mRNA_P-wetherbeei_contig1262.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=2365bp|location=Sequence derived from alignment at P-wetherbeei_contig1262:3711..6075- (Phaeothamnion wetherbeei SAG_119_79)
CGCCAGGAGTGTCCGCGTTCGTGGCAGTTAAGTCTGGAGGAATCGTCTCT GCTCCCCAAATAGCCCGCGATTCATTCACGGCCTCCCCTCTGTCGCCTCC TCGCGCGTGCCGTGTGAGGCCTGCTGCTGAGCGACAAGAGAAGTTCCTCT ATGCTGCCACAACAGAATCTGTGGCAGTCGGCGTCGATAGTCCAGAGGCA ACAGGAGCGGCTGCGGATGACAAAGGCACAACTTCCCCATTCGAGCCGCT CGTCTTGGAGGCCCTGGCCACCGTCATCGATCCCGATCTCGGCCAGGACA TTGTCACCCTGGGCTTCGTCCAACAGCTTCAGATTGTAGAAGGCTCCGCG GGCGCGGAGGTCTCCTTTAATGTCGAGTTGACCACGCCGGCCTGCCCCGT CAAGGAGCAGTTTCGCGAACAATGCAAGTCGCTCGTCGAGGCGCTGCCCG GTGTCTCCCGTGTCGACGTTACGATGACGGCGCAGCCGCCGCGGCCCGCC GATGAGGGCGTTGCCACGGGCATGTCCCGTGTCAGCAACATCATCGCCGT GTCGAGCTGTAAGGGCGGCGTCGGCAAGTCCACGACCGCCGTCAACCTCG CCTTCGCGCTTCATCGCCAGGGCGCGCGCGTCGGAATCCTCGACGCCGAC ATCCACGGCCCCAGCCTGCCGACGATGGTCCGTCCTGAAACACGGGAAGT CGAGTTCGAGGGCAACCAGATCAAGCCGCTGGAGGCGCGCGGCGTCAAGC TCATGAGCTACGGTTTCGTGAATCCCGGCGCGGCGGCCATCATGCGCGGT CCGATGGTGGTGCAGCTTTTGCAGCAGTTCGTTGGCCTCACCAGCTGGGG CGAGCTCGACTATCTGGTGATTGACATGCCGCCCGGCACGGGGGACATCC AGCTGACGCTCTGCCAGGTTCTCAACATCACCGCCGCCGTCGTCGTGACG ACGCCACAGCGGCTCTCCTTCACGGACGTTGTGAAGGGCATCGACATGTT TGACGTTGTCAATGTGCCCAGCGTCGCCGTTGTCGAAAACATGGCCTACT ACGAAGAAGAAACCGATGAAGAAACCGACGAAACTGCCGAAACCGATGGA ACCGCCAAGTTCTCTGCCTCCGGCCTCCCAGACGCTGACGTGCTCGTGGC ACGGGTGAAAGAGGTCTTCGGGCTTCGGGGGGATGAGCTGCGTGAGCGTG CCTTCGGCACGCTGCCGGGTGCTGATAGTTTTAACTTGTCCGAGTCGACG AACCCCGTGGTGCTCCAGGAGAACAGCCTGCGGGAGCTCCTCGTGACGCG GGCTGTGCAGGAGGCGATGTCGGAGGCCGTGGCGGCAGCGGTGGCGGCGA AGGCGGCGGCGAAGGCGGCGGCGGGGCCGCTCAAGCGCCGCTACCTGTTC GGCCGCGGCCACAGCGCGCGCCTGGCAGACATGTGGGGCATTGAGAACAC CGTGCAGATGCCGCTGGCGGCCGACATCGCCCGGCTGGGCGACTCGGGCG TGCCGGTCGTCGTGGCGGCACCGGACGGTCCGCACGCCGCGGCCTACGGT GCGCTGGCGACGGCGGTGGTGCAGGAGGTGGCCAAGCTGCGGCACGGCGG CAGCGGCCGCCCGCAGCTGCGTTATGATGAGGCGGAGCACGCCATCGTCG TCGAAGTCGCTGCGCCGTCCGGTGTGGCGGCGGCAGCAGCGGCGGTGGAA GGAGGGGAAACAGCAACGGGATCGGCGGTGGTGGCGCCAGCGGCGGGCGT GGCGAGTACTGCGGGCGCAGGCGACGCCGCCGGGGCGGCCGCAGCGACAC CGCCGTCGCGCGGCCTCCGGCTGCTGCAGGCCGTGCGGCCGGCGGCGCTG CGGCGGGCGTGCCGCTGCGCTGTGTGCGTGGAGGAGCTGACAGGGCGGCC GCTGCTGCGTCCCGAAGACGTGAGCGACGACGTCAAACCGACCGACTTTG CGCCCGTCGGCAACTACGCCGTTGCGATCGGCTGGAGCGACGGCCACAGG TCGCTGTACCCGTACGCGGCGTTCATCGACGAGTACGGTGGGCGGCGGCG TCGGGCGCGTGGGCTGGACGACGAGGAATTGGCCGGCAGGCCAGCGGCAG CAGCGGCAGCCGACTTGCAGACGCAGCCACGAACAGAGCGACAGTCGGAA CCCGCACCGGTGTGATTGGGTACGGCTGGTCGGGAAAGGGCTTTTACGCC CGTTGGCGGTTGATTGTCTTTGATAGAGTCTTCTTTGGCGAGGGCGATGC TGCATGATGTGCCATCAAGATTGCGCGCTTTTGCTTTTGCAGGCGCAGAG CAAATGCTGCTGGCGGGCCTGCGTTTTGTAGACGTTTCATAAATTTATAC ATACCCCATTCGTCC
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig1262:3711..6075-

>mRNA_P-wetherbeei_contig1262.3.1 ID=mRNA_P-wetherbeei_contig1262.3.1|Name=mRNA_P-wetherbeei_contig1262.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1692bp|location=Sequence derived from alignment at P-wetherbeei_contig1262:3711..6075- (Phaeothamnion wetherbeei SAG_119_79)
ATGACGGCGCAGCCGCCGCGGCCCGCCGATGAGGGCGTTGCCACGGGCAT
GTCCCGTGTCAGCAACATCATCGCCGTGTCGAGCTGTAAGGGCGGCGTCG
GCAAGTCCACGACCGCCGTCAACCTCGCCTTCGCGCTTCATCGCCAGGGC
GCGCGCGTCGGAATCCTCGACGCCGACATCCACGGCCCCAGCCTGCCGAC
GATGGTCCGTCCTGAAACACGGGAAGTCGAGTTCGAGGGCAACCAGATCA
AGCCGCTGGAGGCGCGCGGCGTCAAGCTCATGAGCTACGGTTTCGTGAAT
CCCGGCGCGGCGGCCATCATGCGCGGTCCGATGGTGGTGCAGCTTTTGCA
GCAGTTCGTTGGCCTCACCAGCTGGGGCGAGCTCGACTATCTGGTGATTG
ACATGCCGCCCGGCACGGGGGACATCCAGCTGACGCTCTGCCAGGTTCTC
AACATCACCGCCGCCGTCGTCGTGACGACGCCACAGCGGCTCTCCTTCAC
GGACGTTGTGAAGGGCATCGACATGTTTGACGTTGTCAATGTGCCCAGCG
TCGCCGTTGTCGAAAACATGGCCTACTACGAAGAAGAAACCGATGAAGAA
ACCGACGAAACTGCCGAAACCGATGGAACCGCCAAGTTCTCTGCCTCCGG
CCTCCCAGACGCTGACGTGCTCGTGGCACGGGTGAAAGAGGTCTTCGGGC
TTCGGGGGGATGAGCTGCGTGAGCGTGCCTTCGGCACGCTGCCGGGTGCT
GATAGTTTTAACTTGTCCGAGTCGACGAACCCCGTGGTGCTCCAGGAGAA
CAGCCTGCGGGAGCTCCTCGTGACGCGGGCTGTGCAGGAGGCGATGTCGG
AGGCCGTGGCGGCAGCGGTGGCGGCGAAGGCGGCGGCGAAGGCGGCGGCG
GGGCCGCTCAAGCGCCGCTACCTGTTCGGCCGCGGCCACAGCGCGCGCCT
GGCAGACATGTGGGGCATTGAGAACACCGTGCAGATGCCGCTGGCGGCCG
ACATCGCCCGGCTGGGCGACTCGGGCGTGCCGGTCGTCGTGGCGGCACCG
GACGGTCCGCACGCCGCGGCCTACGGTGCGCTGGCGACGGCGGTGGTGCA
GGAGGTGGCCAAGCTGCGGCACGGCGGCAGCGGCCGCCCGCAGCTGCGTT
ATGATGAGGCGGAGCACGCCATCGTCGTCGAAGTCGCTGCGCCGTCCGGT
GTGGCGGCGGCAGCAGCGGCGGTGGAAGGAGGGGAAACAGCAACGGGATC
GGCGGTGGTGGCGCCAGCGGCGGGCGTGGCGAGTACTGCGGGCGCAGGCG
ACGCCGCCGGGGCGGCCGCAGCGACACCGCCGTCGCGCGGCCTCCGGCTG
CTGCAGGCCGTGCGGCCGGCGGCGCTGCGGCGGGCGTGCCGCTGCGCTGT
GTGCGTGGAGGAGCTGACAGGGCGGCCGCTGCTGCGTCCCGAAGACGTGA
GCGACGACGTCAAACCGACCGACTTTGCGCCCGTCGGCAACTACGCCGTT
GCGATCGGCTGGAGCGACGGCCACAGGTCGCTGTACCCGTACGCGGCGTT
CATCGACGAGTACGGTGGGCGGCGGCGTCGGGCGCGTGGGCTGGACGACG
AGGAATTGGCCGGCAGGCCAGCGGCAGCAGCGGCAGCCGACTTGCAGACG
CAGCCACGAACAGAGCGACAGTCGGAACCCGCACCGGTGTGA
back to top