mRNA_P-wetherbeei_contig5876.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig5876.2.1
Unique NamemRNA_P-wetherbeei_contig5876.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig5876.2.1 vs. uniprot
Match: A0A024TLA5_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TLA5_9STRA)

HSP 1 Score: 54.3 bits (129), Expect = 1.730e-7
Identity = 28/52 (53.85%), Postives = 39/52 (75.00%), Query Frame = 2 
Query:    8 QYGREWRSLANIIKTRTLTQIRTHAQKYFARLERE--QLEIYSEDGRGSDAD 157
            ++GREW+ +A  IKTRT  QIR+HAQKYFA+L ++    ++ SEDG+ SD D
Sbjct:   37 EHGREWKKVAAKIKTRTSAQIRSHAQKYFAKLAKDGTTTDVPSEDGQLSDTD 88
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BLAST of mRNA_P-wetherbeei_contig5876.2.1 vs. uniprot
Match: A0A397C3Y6_9STRA (Uncharacterized protein n=3 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397C3Y6_9STRA)

HSP 1 Score: 53.9 bits (128), Expect = 2.650e-7
Identity = 27/53 (50.94%), Postives = 39/53 (73.58%), Query Frame = 2 
Query:    8 QYGREWRSLANIIKTRTLTQIRTHAQKYFARLEREQ---LEIYSEDGRGSDAD 157
            ++GREW+ +A+ IKTRT  QIR+HAQKYFA+L ++    ++  S+DG  SD D
Sbjct:   40 EHGREWKKVASKIKTRTSAQIRSHAQKYFAKLAKDSGGTMDSLSDDGNLSDTD 92
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BLAST of mRNA_P-wetherbeei_contig5876.2.1 vs. uniprot
Match: A0A7R9UFL2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UFL2_9STRA)

HSP 1 Score: 55.1 bits (131), Expect = 2.990e-7
Identity = 26/39 (66.67%), Postives = 30/39 (76.92%), Query Frame = 2 
Query:   11 YGREWRSLANIIKTRTLTQIRTHAQKYFARLEREQLEIY 127
            YGREW+ +A  IKTRT  QIR+HAQKYFA+L RE  E Y
Sbjct:  288 YGREWKKVAQNIKTRTSAQIRSHAQKYFAKLSREGKEAY 326
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BLAST of mRNA_P-wetherbeei_contig5876.2.1 vs. uniprot
Match: A0A485K819_9STRA (Aste57867_950 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485K819_9STRA)

HSP 1 Score: 54.3 bits (129), Expect = 5.540e-7
Identity = 23/35 (65.71%), Postives = 32/35 (91.43%), Query Frame = 2 
Query:    8 QYGREWRSLANIIKTRTLTQIRTHAQKYFARLERE 112
            +YGR+W ++A ++KTR++TQIRTHAQKYFA+ ERE
Sbjct:  104 RYGRQWFNVAKVVKTRSVTQIRTHAQKYFAKQERE 138
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BLAST of mRNA_P-wetherbeei_contig5876.2.1 vs. uniprot
Match: A0A836C952_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C952_9STRA)

HSP 1 Score: 49.7 bits (117), Expect = 1.220e-6
Identity = 21/33 (63.64%), Postives = 28/33 (84.85%), Query Frame = 2 
Query:   11 YGREWRSLANIIKTRTLTQIRTHAQKYFARLER 109
            YGREWR++A ++ TRT+ Q RTHAQKYF +L+R
Sbjct:   21 YGREWRTIAAMVGTRTVVQTRTHAQKYFQKLQR 53
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BLAST of mRNA_P-wetherbeei_contig5876.2.1 vs. uniprot
Match: A0A7S1C6P3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1C6P3_9STRA)

HSP 1 Score: 51.2 bits (121), Expect = 1.290e-6
Identity = 22/35 (62.86%), Postives = 30/35 (85.71%), Query Frame = 2 
Query:   11 YGREWRSLANIIKTRTLTQIRTHAQKYFARLEREQ 115
            YGREW+ +A++I +RT+ QIRTHAQKYF +L +EQ
Sbjct:   38 YGREWKKVASMIPSRTVVQIRTHAQKYFQKLAKEQ 72
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BLAST of mRNA_P-wetherbeei_contig5876.2.1 vs. uniprot
Match: A0A067CLM4_SAPPC (Uncharacterized protein n=1 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067CLM4_SAPPC)

HSP 1 Score: 51.6 bits (122), Expect = 1.750e-6
Identity = 21/35 (60.00%), Postives = 31/35 (88.57%), Query Frame = 2 
Query:    8 QYGREWRSLANIIKTRTLTQIRTHAQKYFARLERE 112
            +YGR+W ++  ++KTR++TQIRTHAQKYFA+ E+E
Sbjct:   51 RYGRQWFNVGKVVKTRSVTQIRTHAQKYFAKQEKE 85
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BLAST of mRNA_P-wetherbeei_contig5876.2.1 vs. uniprot
Match: T0RM12_SAPDV (Uncharacterized protein n=1 Tax=Saprolegnia diclina (strain VS20) TaxID=1156394 RepID=T0RM12_SAPDV)

HSP 1 Score: 52.8 bits (125), Expect = 1.970e-6
Identity = 22/36 (61.11%), Postives = 31/36 (86.11%), Query Frame = 2 
Query:    8 QYGREWRSLANIIKTRTLTQIRTHAQKYFARLEREQ 115
            QYG++W+ +A +I TRTL QIRTHAQK+F +LE++Q
Sbjct:   92 QYGKDWKKVAGLIPTRTLMQIRTHAQKFFKKLEKDQ 127
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BLAST of mRNA_P-wetherbeei_contig5876.2.1 vs. uniprot
Match: A0A1V9ZE80_9STRA (Uncharacterized protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZE80_9STRA)

HSP 1 Score: 52.8 bits (125), Expect = 1.990e-6
Identity = 25/47 (53.19%), Postives = 36/47 (76.60%), Query Frame = 2 
Query:   11 YGREWRSLANIIKTRTLTQIRTHAQKYFARLEREQLEIYSEDGRGSD 151
            YG++W+ +A +I TRTL QIRTHAQKYF +LE+E+    +++  GSD
Sbjct:   74 YGKDWKKIALMIPTRTLMQIRTHAQKYFKKLEKEEKIKDAKNNLGSD 120
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BLAST of mRNA_P-wetherbeei_contig5876.2.1 vs. uniprot
Match: K3WLW5_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WLW5_GLOUD)

HSP 1 Score: 50.8 bits (120), Expect = 2.190e-6
Identity = 23/34 (67.65%), Postives = 29/34 (85.29%), Query Frame = 2 
Query:   11 YGREWRSLANIIKTRTLTQIRTHAQKYFARLERE 112
            YGREW+ +A+ IKTRT  QIR+HAQKYFA+L R+
Sbjct:   41 YGREWKKVASKIKTRTSAQIRSHAQKYFAKLARD 74
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig5876.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A024TLA5_9STRA1.730e-753.85Uncharacterized protein n=1 Tax=Aphanomyces invada... [more]
A0A397C3Y6_9STRA2.650e-750.94Uncharacterized protein n=3 Tax=Aphanomyces astaci... [more]
A0A7R9UFL2_9STRA2.990e-766.67Hypothetical protein (Fragment) n=1 Tax=Pinguiococ... [more]
A0A485K819_9STRA5.540e-765.71Aste57867_950 protein n=1 Tax=Aphanomyces stellatu... [more]
A0A836C952_9STRA1.220e-663.64Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A7S1C6P3_9STRA1.290e-662.86Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]
A0A067CLM4_SAPPC1.750e-660.00Uncharacterized protein n=1 Tax=Saprolegnia parasi... [more]
T0RM12_SAPDV1.970e-661.11Uncharacterized protein n=1 Tax=Saprolegnia diclin... [more]
A0A1V9ZE80_9STRA1.990e-653.19Uncharacterized protein n=1 Tax=Thraustotheca clav... [more]
K3WLW5_GLOUD2.190e-667.65Uncharacterized protein n=1 Tax=Globisporangium ul... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig5876contigP-wetherbeei_contig5876:654..1144 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size192
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Cds size171
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186869.2148888-UTR-P-wetherbeei_contig5876:653..6741683186869.2148888-UTR-P-wetherbeei_contig5876:653..674Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig5876 654..674 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186869.2257273-CDS-P-wetherbeei_contig5876:674..7411683186869.2257273-CDS-P-wetherbeei_contig5876:674..741Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5876 675..741 +
1683186869.2350607-CDS-P-wetherbeei_contig5876:1040..11441683186869.2350607-CDS-P-wetherbeei_contig5876:1040..1144Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5876 1041..1144 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig5876.2.1prot_P-wetherbeei_contig5876.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig5876 675..1144 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig5876.2.1

>prot_P-wetherbeei_contig5876.2.1 ID=prot_P-wetherbeei_contig5876.2.1|Name=mRNA_P-wetherbeei_contig5876.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=57bp
MEESGKHHQDAHSDSDSHARTKVFRAAGAGAAGDLQRGRPWLRCRRWRRR
WRRGLR*
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mRNA from alignment at P-wetherbeei_contig5876:654..1144+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig5876.2.1 ID=mRNA_P-wetherbeei_contig5876.2.1|Name=mRNA_P-wetherbeei_contig5876.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=491bp|location=Sequence derived from alignment at P-wetherbeei_contig5876:654..1144+ (Phaeothamnion wetherbeei SAG_119_79)
CTATGCCCAGTATGGCCGCGAATGGAGGAGTCTGGCAAACATCATCAAGA
CGCGCACTCTGACTCAGATTCGCACGCACGCACAAAAGGTGGGTTTCGCA
AACTTCCAGAAAAAATTCCGAGAGGCCGTCGTTGGGGCATGTATTTCTGT
CTTGCCATCTCGAGTCGACAGCTCTTAGCTAAAATCCACGACGGGAGCAG
CAGCGCCCTTCCCTGCCATCGTCGAAAATTGTCCCGCCGCCGCTGCCTTT
GTACGCCACCGCGGAACTTTCCTTCTTTTTTATGATGCTCACTCTCTACT
GACGCTTCCCCTAGGTCACCTCTTGCTCGAACTCCACCGGTCCCGGCTCT
TCGCCCGTGTCGCGCGGTACCACCGACTGCACGGCAGTATTTCGCGCGGC
TGGAGCGGGAGCAGCTGGAGATCTACAGCGAGGACGGCCGTGGCTCAGAT
GCCGACGATGGCGTCGCCGATGGCGACGTGGCCTGCGATAA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig5876:654..1144+

>mRNA_P-wetherbeei_contig5876.2.1 ID=mRNA_P-wetherbeei_contig5876.2.1|Name=mRNA_P-wetherbeei_contig5876.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=171bp|location=Sequence derived from alignment at P-wetherbeei_contig5876:654..1144+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGAGGAGTCTGGCAAACATCATCAAGACGCGCACTCTGACTCAGATTC
GCACGCACGCACAAAAGTATTTCGCGCGGCTGGAGCGGGAGCAGCTGGAG
ATCTACAGCGAGGACGGCCGTGGCTCAGATGCCGACGATGGCGTCGCCGA
TGGCGACGTGGCCTGCGATAA
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