mRNA_P-wetherbeei_contig5867.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79
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Overview
Homology
BLAST of mRNA_P-wetherbeei_contig5867.2.1 vs. uniprot
Match: A0A3C1L312_9ACTN (DNA-binding response regulator n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A3C1L312_9ACTN) HSP 1 Score: 422 bits (1084), Expect = 1.280e-148 Identity = 215/228 (94.30%), Postives = 225/228 (98.68%), Query Frame = 1
Query: 10 TVLVVEDEVKIRDLVRRYLEREDLAVVTTGSGAEAMSILERGGIDLLVLDLNLPDVAGETIASEFAGRLPIVMLTAKSGEADRIHGLELGADDYLTKPFSPRELVLRVQAVLRRSAVSTVDTSVTSFGGGQLIIDEVRHEATVSGVVVELTPTEWSLLTVLASSPGRVFSRSELVNRVRGYEFDGYERTVDSHIKNLRRKIEPDPHEPTVVETVLGAGYRLGLSRDRS 693
TVLVVEDEVKIRDLVRRYLEREDLAVVTTGSGAEAMSILERGGIDLLVLDLNLPDVAGETIA+EFAGRLPIVMLTAKSGEADRI GLELGADDYLTKPFSPRELVLRVQAVLRRSAV++VDTS++SFGGG+L+IDEVRHEATVSG VVELTPTEWSLLTVLASSPGRVFSRSELVNRVRGYEFDGYERTVDSHIKNLRRKIEPD H+PTVVETVLGAGYRLGL+RDR+
Sbjct: 2 TVLVVEDEVKIRDLVRRYLEREDLAVVTTGSGAEAMSILERGGIDLLVLDLNLPDVAGETIATEFAGRLPIVMLTAKSGEADRIRGLELGADDYLTKPFSPRELVLRVQAVLRRSAVTSVDTSISSFGGGELVIDEVRHEATVSGAVVELTPTEWSLLTVLASSPGRVFSRSELVNRVRGYEFDGYERTVDSHIKNLRRKIEPDSHDPTVVETVLGAGYRLGLARDRA 229
BLAST of mRNA_P-wetherbeei_contig5867.2.1 vs. uniprot
Match: A0A3D5DR39_9ACTN (DNA-binding response regulator n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A3D5DR39_9ACTN) HSP 1 Score: 310 bits (794), Expect = 2.090e-104 Identity = 161/230 (70.00%), Postives = 180/230 (78.26%), Query Frame = 1
Query: 4 SVTVLVVEDEVKIRDLVRRYLEREDLAVVTTGSGAEAMSILERGGIDLLVLDLNLPDVAGETIASEFA--GRLPIVMLTAKSGEADRIHGLELGADDYLTKPFSPRELVLRVQAVLRRSAVSTVDTSVTSFGGGQLIIDEVRHEATVSGVVVELTPTEWSLLTVLASSPGRVFSRSELVNRVRGYEFDGYERTVDSHIKNLRRKIEPDPHEPTVVETVLGAGYRLGLSRD 687
+ TVLVVEDE KIRDLVR LERE L VV+TGSGAEA+ + R DL+VLDL LPDV GE +A E PI+MLTAK EADRI GLELGADDYLTKPFSPRELVLRVQAVLRR SFGGGQL+ID+ RH+ATV G VVELTPTEW +L LA PGRV+SR EL+NRVRGYEF+GYERT+DSH+KNLRRK+E DP P +VETVLGAGYRLGL+RD
Sbjct: 2 TATVLVVEDEKKIRDLVRGMLEREGLTVVSTGSGAEAIDLAGRIHPDLVVLDLGLPDVPGEEVAREVRRLAETPILMLTAKVTEADRIRGLELGADDYLTKPFSPRELVLRVQAVLRRGRAPAAAGGPASFGGGQLVIDDERHQATVRGAVVELTPTEWGILVALAGVPGRVYSRFELINRVRGYEFEGYERTIDSHVKNLRRKVERDPAAPAIVETVLGAGYRLGLTRD 231
BLAST of mRNA_P-wetherbeei_contig5867.2.1 vs. uniprot
Match: A0A7K0JYM0_9ACTN (Response regulator n=1 Tax=Acidiferrimicrobium australe TaxID=2664430 RepID=A0A7K0JYM0_9ACTN) HSP 1 Score: 310 bits (793), Expect = 2.970e-104 Identity = 156/228 (68.42%), Postives = 181/228 (79.39%), Query Frame = 1
Query: 10 TVLVVEDEVKIRDLVRRYLEREDLAVVTTGSGAEAMSILERGGIDLLVLDLNLPDVAGETIASEFAGR--LPIVMLTAKSGEADRIHGLELGADDYLTKPFSPRELVLRVQAVLRRSAVSTVDTSVTSFGGGQLIIDEVRHEATVSGVVVELTPTEWSLLTVLASSPGRVFSRSELVNRVRGYEFDGYERTVDSHIKNLRRKIEPDPHEPTVVETVLGAGYRLGLSRD 687
TVL+VEDE K+R+LVR YLE E L V++TGSGAEA+S ER + L+VLDL LPD+ GE +A E R +PIVMLTAKS E DRI GL+LGADDY+TKPFSP+ELVLRVQAVLRR V+ SFGGG+L+IDE R E TV G VV LTPTEW LL LAS+PGRV+SR ELVNR+RGYEF+GYERT+DSH+KNLRRKIE DP P +V+TVLG GYRLGL RD
Sbjct: 4 TVLLVEDEYKLRELVRSYLEHEGLVVLSTGSGAEAISFAERAAVSLVVLDLGLPDIPGEEVARELRARSDVPIVMLTAKSEERDRIAGLQLGADDYVTKPFSPKELVLRVQAVLRRGRSERVEAGPVSFGGGELVIDEERREVTVRGAVVGLTPTEWGLLAALASAPGRVYSRLELVNRIRGYEFEGYERTIDSHVKNLRRKIETDPASPRLVQTVLGGGYRLGLRRD 231
BLAST of mRNA_P-wetherbeei_contig5867.2.1 vs. uniprot
Match: A0A349B481_9ACTN (DNA-binding response regulator n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A349B481_9ACTN) HSP 1 Score: 306 bits (785), Expect = 4.730e-103 Identity = 155/231 (67.10%), Postives = 187/231 (80.95%), Query Frame = 1
Query: 4 SVTVLVVEDEVKIRDLVRRYLEREDLAVVTTGSGAEAMSILERGGIDLLVLDLNLPDVAGETIASEF--AGRLPIVMLTAKSGEADRIHGLELGADDYLTKPFSPRELVLRVQAVLRRSAVSTVDTSVTSFGGGQLIIDEVRHEATVSGVVVELTPTEWSLLTVLASSPGRVFSRSELVNRVRGYEFDGYERTVDSHIKNLRRKIEPDPHEPTVVETVLGAGYRLGLSRDR 690
S+TVLVVEDE+KIR+L+R YLERE +V+TTGSGAEA++++ G +DL++LDL LPDV GET+A+E + PI+MLTA++GE DRI GLELGADDY+TKPFSPRE+VLR QA++RRS + SV SFG G L+IDE RHEATV G VELTPTEW +LT LA+ PGRV+SR EL+NRVRGYE ER VDSH+KNLRRK+E DP P +VETVLGAGYRLGLS DR
Sbjct: 2 SITVLVVEDELKIRELLRSYLEREGWSVLTTGSGAEALTMIAGGAVDLIILDLGLPDVPGETVAAEIRRSSATPILMLTARTGEDDRIRGLELGADDYVTKPFSPREVVLRAQAIVRRSTAAPDARSVRSFGDGALVIDEARHEATVDGKRVELTPTEWGILTALAAVPGRVYSRLELLNRVRGYELAS-ERVVDSHVKNLRRKLETDPQHPRIVETVLGAGYRLGLSHDR 231
BLAST of mRNA_P-wetherbeei_contig5867.2.1 vs. uniprot
Match: A0A832B7J2_9ACTN (Response regulator transcription factor n=1 Tax=Acidimicrobiales bacterium TaxID=2201156 RepID=A0A832B7J2_9ACTN) HSP 1 Score: 305 bits (781), Expect = 3.100e-102 Identity = 159/231 (68.83%), Postives = 184/231 (79.65%), Query Frame = 1
Query: 1 VSVTVLVVEDEVKIRDLVRRYLEREDLAVVTTGSGAEAMSILERGGIDLLVLDLNLPDVAGETIASEFAGR--LPIVMLTAKSGEADRIHGLELGADDYLTKPFSPRELVLRVQAVLRRSAVSTVDTSVTSFGGGQLIIDEVRHEATVSGVVVELTPTEWSLLTVLASSPGRVFSRSELVNRVRGYEFDGYERTVDSHIKNLRRKIEPDPHEPTVVETVLGAGYRLGLSRD 687
V+ TVLVVEDE K+RDLVR YLERE + V++TGSGAEA+ +ER +DL+VLDL LPDV+GE +A E R +PIVMLTAKS E DRI GLELGADDYLTKPFSP+ELVLRVQAVLRR S + S+GG ++ IDE R E V G VVELTPTEW LL LA +PGRV+SR EL+NRVRGYEF+GYERTVDSH+KNLR KIE DP PT+V+TVLG+GYRLGL RD
Sbjct: 15 VATTVLVVEDEPKLRDLVRSYLEREGIVVLSTGSGAEALHFVERSPVDLVVLDLGLPDVSGEDVARELRARSDVPIVMLTAKSSEQDRIAGLELGADDYLTKPFSPKELVLRVQAVLRRGHSSVAPGAPLSYGG-EMEIDEDRREVRVRGDVVELTPTEWGLLLALAGAPGRVYSRYELINRVRGYEFEGYERTVDSHVKNLRHKIERDPAHPTIVQTVLGSGYRLGLRRD 244
BLAST of mRNA_P-wetherbeei_contig5867.2.1 vs. uniprot
Match: A0A1F2YAY9_9ACTN (DNA-binding response regulator n=1 Tax=Actinobacteria bacterium RBG_19FT_COMBO_70_19 TaxID=1797208 RepID=A0A1F2YAY9_9ACTN) HSP 1 Score: 299 bits (766), Expect = 3.670e-100 Identity = 150/228 (65.79%), Postives = 183/228 (80.26%), Query Frame = 1
Query: 10 TVLVVEDEVKIRDLVRRYLEREDLAVVTTGSGAEAMSILERGGIDLLVLDLNLPDVAGETIASEF--AGRLPIVMLTAKSGEADRIHGLELGADDYLTKPFSPRELVLRVQAVLRRSAVSTVDTSVTSFGGGQLIIDEVRHEATVSGVVVELTPTEWSLLTVLASSPGRVFSRSELVNRVRGYEFDGYERTVDSHIKNLRRKIEPDPHEPTVVETVLGAGYRLGLSRD 687
T+LVVEDE KIR L+R YLER +V+TTGSGAEA++++ DL++LDL LPDV GET+A E +GR PI+MLTAK+GE DRI GLE+GADDY+TKPFSP+E+VLRVQA+LRR+ + ++ SFG G+L +DE RHE V GV+VELTP+EWSLL LA +PGRV+SR+EL+NR RGYEF ER VDSH+KNLRRKIE DPHEP +VETVLG GYRLGL RD
Sbjct: 4 TILVVEDETKIRSLLRGYLERAGFSVLTTGSGAEALTLVASAAPDLVLLDLGLPDVPGETVAREIRRSGRTPILMLTAKTGEEDRISGLEIGADDYVTKPFSPQEVVLRVQAILRRAGGALGGAAMRSFGAGELTVDEDRHEVRVRGVMVELTPSEWSLLVALAGAPGRVYSRTELINRTRGYEFAS-ERAVDSHVKNLRRKIEEDPHEPRIVETVLGTGYRLGLRRD 230
BLAST of mRNA_P-wetherbeei_contig5867.2.1 vs. uniprot
Match: A0A2E0RRA8_9ACTN (DNA-binding response regulator n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A2E0RRA8_9ACTN) HSP 1 Score: 292 bits (747), Expect = 2.750e-97 Identity = 148/230 (64.35%), Postives = 185/230 (80.43%), Query Frame = 1
Query: 4 SVTVLVVEDEVKIRDLVRRYLEREDLAVVTTGSGAEAMSILERGGIDLLVLDLNLPDVAGETIASEF--AGRLPIVMLTAKSGEADRIHGLELGADDYLTKPFSPRELVLRVQAVLRRSAVSTVDTSVTSFGGGQLIIDEVRHEATVSGVVVELTPTEWSLLTVLASSPGRVFSRSELVNRVRGYEFDGYERTVDSHIKNLRRKIEPDPHEPTVVETVLGAGYRLGLSRD 687
++TV+VVEDE+KIR+L+R YLERE AV+TTGSGAEA+++ + DL++LDL LPDV+GET+A+E + PI+MLTA++ E DRI GLELGADDY+TKPFSPRE++LR A+LRR T SFGG +++IDE RHE V G VELTPTEW +LT LA+ PGRV+SR EL+NRVRG+EF ERTVDSH+KNLRRK+E DPH+PT+VETVLGAGYRLGL+RD
Sbjct: 2 ALTVMVVEDELKIRELLRSYLEREGWAVLTTGSGAEAITLAQSSAPDLVILDLGLPDVSGETVATEIRRSSSTPILMLTARASEEDRIRGLELGADDYVTKPFSPREVMLRAHAILRRGRDGG-STRGRSFGGREIVIDEDRHEVVVRGGTVELTPTEWGILTALATRPGRVYSRLELLNRVRGFEFAS-ERTVDSHVKNLRRKLERDPHDPTIVETVLGAGYRLGLTRD 229
BLAST of mRNA_P-wetherbeei_contig5867.2.1 vs. uniprot
Match: A0A2E0RW68_9ACTN (DNA-binding response regulator n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A2E0RW68_9ACTN) HSP 1 Score: 291 bits (744), Expect = 7.860e-97 Identity = 149/230 (64.78%), Postives = 185/230 (80.43%), Query Frame = 1
Query: 4 SVTVLVVEDEVKIRDLVRRYLEREDLAVVTTGSGAEAMSILERGGIDLLVLDLNLPDVAGETIASEF--AGRLPIVMLTAKSGEADRIHGLELGADDYLTKPFSPRELVLRVQAVLRRSAVSTVDTSVTSFGGGQLIIDEVRHEATVSGVVVELTPTEWSLLTVLASSPGRVFSRSELVNRVRGYEFDGYERTVDSHIKNLRRKIEPDPHEPTVVETVLGAGYRLGLSRD 687
++TVLVVEDE+KIR+L+R YLERE +V+TTGSGAEA+++ DL++LDL LPDV+GET+A+E PI+MLTA++GEADRI GLELGADDY+TKPFSPRE+VLR +A+LRRS + + SFGGG+++IDE RHE TV G +ELTPTEW +L LA+ PGRV+SR EL+NRVRGYEF ER VDSH+KNLRRKIE DP P +VETVLGAGYRLG++RD
Sbjct: 2 ALTVLVVEDELKIRELLRSYLEREGWSVLTTGSGAEAITLAGTADPDLVILDLGLPDVSGETVAAELRSTSATPILMLTARAGEADRIRGLELGADDYVTKPFSPREVVLRARAILRRSGGALAERG-RSFGGGEVLIDEDRHELTVRGREIELTPTEWGILAALATRPGRVYSRLELLNRVRGYEFAS-ERAVDSHVKNLRRKIERDPANPDIVETVLGAGYRLGVARD 229
BLAST of mRNA_P-wetherbeei_contig5867.2.1 vs. uniprot
Match: A0A6I3EUI1_9ACTN (Response regulator n=2 Tax=root TaxID=1 RepID=A0A6I3EUI1_9ACTN) HSP 1 Score: 288 bits (737), Expect = 9.430e-96 Identity = 144/227 (63.44%), Postives = 172/227 (75.77%), Query Frame = 1
Query: 13 VLVVEDEVKIRDLVRRYLEREDLAVVTTGSGAEAMSILERGGIDLLVLDLNLPDVAGETIASEF--AGRLPIVMLTAKSGEADRIHGLELGADDYLTKPFSPRELVLRVQAVLRRSAVSTVDTSVTSFGGGQLIIDEVRHEATVSGVVVELTPTEWSLLTVLASSPGRVFSRSELVNRVRGYEFDGYERTVDSHIKNLRRKIEPDPHEPTVVETVLGAGYRLGLSRD 687
VLVV+DEV+IR+LVRRYLE E V+T G+GAEA+ ++ R +DL+VLDL LPD++GE +A + +PI+MLTAK E DRI GLE GADDY+TKPFSPREL LRV A+LRR + V + SFGGG LIIDE TV G V+LTPTEW +L LA+ PGRV SR EL+NRVRGYEFDGYERTVDSH+KNLR KIE DP +P +V+TV G GYRLGL RD
Sbjct: 4 VLVVDDEVRIRELVRRYLEHEGHQVLTAGTGAEAIDVVRRSAVDLIVLDLRLPDISGEEVADDVRRTSDVPILMLTAKIDERDRIRGLEAGADDYVTKPFSPRELTLRVNAILRRGKGALVADASRSFGGGALIIDETTRRVTVRGTSVDLTPTEWGVLLALATQPGRVCSRYELINRVRGYEFDGYERTVDSHVKNLRHKIEADPSQPVIVQTVTGVGYRLGLPRD 230
BLAST of mRNA_P-wetherbeei_contig5867.2.1 vs. uniprot
Match: A0A6P2BWT9_9ACTN (DNA-binding response regulator n=1 Tax=Trebonia kvetii TaxID=2480626 RepID=A0A6P2BWT9_9ACTN) HSP 1 Score: 288 bits (737), Expect = 1.010e-95 Identity = 147/231 (63.64%), Postives = 174/231 (75.32%), Query Frame = 1
Query: 4 SVTVLVVEDEVKIRDLVRRYLEREDLAVVTTGSGAEAMSILERGGIDLLVLDLNLPDVAGETIASEF--AGRLPIVMLTAKSGEADRIHGLELGADDYLTKPFSPRELVLRVQAVLRRSA-VSTVDTSVTSFGGGQLIIDEVRHEATVSGVVVELTPTEWSLLTVLASSPGRVFSRSELVNRVRGYEFDGYERTVDSHIKNLRRKIEPDPHEPTVVETVLGAGYRLGLSRD 687
+ TVLVVEDE K+RD +R YLER V++TGSGAEA+++ DL+VLDL LPDV GE +A E A +PIVMLTA++ E DRI GLELGADDY+TKPFSPRELVLRVQA+LRR S VTS+G G L+IDE R TV G +LTPTEW +L LA+ PGRV+SR EL+N+VRGYEF+GYERTVDSH+KNLRRKIE DP P ++ TVLG GYRLGL RD
Sbjct: 2 AATVLVVEDERKLRDFIRSYLERAGFTVLSTGSGAEAITMAADAAPDLVVLDLGLPDVPGEAVARELRSASAVPIVMLTARAAEEDRIRGLELGADDYVTKPFSPRELVLRVQAILRRGGGPSAAAHGVTSYGDGTLVIDEPRRTVTVRGAAAQLTPTEWGILGALATVPGRVYSRLELINKVRGYEFEGYERTVDSHVKNLRRKIEQDPGNPAIIVTVLGGGYRLGLGRD 232 The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig5867.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-wetherbeei_contig5867.2.1 >prot_P-wetherbeei_contig5867.2.1 ID=prot_P-wetherbeei_contig5867.2.1|Name=mRNA_P-wetherbeei_contig5867.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=232bp VSVTVLVVEDEVKIRDLVRRYLEREDLAVVTTGSGAEAMSILERGGIDLLback to top mRNA from alignment at P-wetherbeei_contig5867:719..1414+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-wetherbeei_contig5867.2.1 ID=mRNA_P-wetherbeei_contig5867.2.1|Name=mRNA_P-wetherbeei_contig5867.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=696bp|location=Sequence derived from alignment at P-wetherbeei_contig5867:719..1414+ (Phaeothamnion wetherbeei SAG_119_79)back to top Coding sequence (CDS) from alignment at P-wetherbeei_contig5867:719..1414+ >mRNA_P-wetherbeei_contig5867.2.1 ID=mRNA_P-wetherbeei_contig5867.2.1|Name=mRNA_P-wetherbeei_contig5867.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=696bp|location=Sequence derived from alignment at P-wetherbeei_contig5867:719..1414+ (Phaeothamnion wetherbeei SAG_119_79)back to top |