mRNA_P-wetherbeei_contig5866.2.2 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig5866.2.2
Unique NamemRNA_P-wetherbeei_contig5866.2.2
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig5866.2.2 vs. uniprot
Match: D8LC28_ECTSI (TYRosinase family member (Tyr-4) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LC28_ECTSI)

HSP 1 Score: 76.6 bits (187), Expect = 6.310e-12
Identity = 39/71 (54.93%), Postives = 48/71 (67.61%), Query Frame = 2 
Query:    2 VMCKYVRREIRSLTEADRNELMDAMNTLW--KLPTADGRALYGPDYSDIRAFARFHH-GGTHPDCDAFHGG 205
            VM KYVRREIRSLT+ +R EL+DAM T+W  ++   +G+ LYG  Y+DI A  R HH   TH  CD FH G
Sbjct:  222 VMVKYVRREIRSLTDDEREELLDAMFTIWDVRVDGGNGKELYGDGYADIYAINRLHHKAATHGTCDHFHDG 292
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BLAST of mRNA_P-wetherbeei_contig5866.2.2 vs. uniprot
Match: D8LC46_ECTSI (Tyrosinase_Cu-bd domain-containing protein n=3 Tax=Ectocarpus TaxID=2879 RepID=D8LC46_ECTSI)

HSP 1 Score: 76.3 bits (186), Expect = 8.790e-12
Identity = 39/71 (54.93%), Postives = 49/71 (69.01%), Query Frame = 2 
Query:    2 VMCKYVRREIRSLTEADRNELMDAMNTLW--KLPTADGRALYGPDYSDIRAFARFHHGGTHP-DCDAFHGG 205
            VM KYVRREIR+LT+ +R EL DAM TLW  ++   +G+ LYG DY+DI A  R H+ G  P +CD FH G
Sbjct:  267 VMVKYVRREIRTLTDDEREELFDAMFTLWSVRVDGGNGKELYGDDYADIFAINRLHYKGASPYECDHFHDG 337
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BLAST of mRNA_P-wetherbeei_contig5866.2.2 vs. uniprot
Match: D7FSP4_ECTSI (PKD domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FSP4_ECTSI)

HSP 1 Score: 75.9 bits (185), Expect = 1.120e-11
Identity = 37/67 (55.22%), Postives = 45/67 (67.16%), Query Frame = 2 
Query:    2 VMCKYVRREIRSLTEADRNELMDAMNTLWKLPTADGRALYGPDYSDIRAFARFH-HGGTHPDCDAFH 199
            VM KYVRREIRSLT+ DR    DAM TL++LPT +GR LYG +Y  I  F + H +G    DCD +H
Sbjct:  196 VMVKYVRREIRSLTDKDREAFFDAMETLYRLPTVEGRELYGEEYKGINFFVQMHLNGAGVSDCDHWH 262
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BLAST of mRNA_P-wetherbeei_contig5866.2.2 vs. uniprot
Match: A0A6H5J7R8_9PHAE (TYR protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J7R8_9PHAE)

HSP 1 Score: 75.9 bits (185), Expect = 1.170e-11
Identity = 38/71 (53.52%), Postives = 48/71 (67.61%), Query Frame = 2 
Query:    2 VMCKYVRREIRSLTEADRNELMDAMNTLW--KLPTADGRALYGPDYSDIRAFARFHHGGTHP-DCDAFHGG 205
            VM KYVRRE+R+LT+ +R EL DAM TLW  ++   +G+ LYG DY+DI A  R H+    P DCD FH G
Sbjct:  231 VMVKYVRRELRTLTDEEREELFDAMYTLWTVRVKGGNGKELYGDDYADIYAINRLHYKAASPQDCDHFHDG 301
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BLAST of mRNA_P-wetherbeei_contig5866.2.2 vs. uniprot
Match: D7G0K0_ECTSI (Tyrosinase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0K0_ECTSI)

HSP 1 Score: 73.9 bits (180), Expect = 3.970e-11
Identity = 37/73 (50.68%), Postives = 44/73 (60.27%), Query Frame = 2 
Query:    2 VMCKYVRREIRSLTEADRNELMDAMNTLWKLPTADGRALYGPDYSDIRAFARFH-HGGTHPDCDAFHGGTATV 217
            VM KYVRREIR LT+ DR    DAM TL++LPT +G ALYG DY  I  F + H  G    +CD +H     V
Sbjct:   36 VMVKYVRREIRQLTDKDREAFFDAMETLYRLPTGEGVALYGEDYKGIEFFVQMHLDGAAVKECDHWHDDAGIV 108
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BLAST of mRNA_P-wetherbeei_contig5866.2.2 vs. uniprot
Match: A0A7S2XX66_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XX66_9STRA)

HSP 1 Score: 73.6 bits (179), Expect = 6.450e-11
Identity = 36/70 (51.43%), Postives = 47/70 (67.14%), Query Frame = 2 
Query:    2 VMCKYVRREIRSLTEADRNELMDAMNTLWKLPTADGRALYGPDYSDIRAFARFHH--GGTHPDCDAFHGG 205
            ++ KYVRRE+R+L E DR++ MD M TLWK+ T +G+ALYGPDY  +    +FH    G   DCD FH G
Sbjct:  186 LVVKYVRRELRTLDEEDRDKTMDVMATLWKVSTEEGQALYGPDYQGMDTLLKFHLMLAGAQ-DCDHFHQG 254
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BLAST of mRNA_P-wetherbeei_contig5866.2.2 vs. uniprot
Match: A0A6H5JRR4_9PHAE (TYR protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JRR4_9PHAE)

HSP 1 Score: 72.8 bits (177), Expect = 1.240e-10
Identity = 38/80 (47.50%), Postives = 50/80 (62.50%), Query Frame = 2 
Query:    2 VMCKYVRREIRSLTEADRNELMDAMNTLW--KLPTADGRALYGPDYSDIRAFARFHHGGTHPD-CDAFHGGTATVCTQKM 232
            VM KYVRREIR+LT+ +R EL DAM TLW  ++ T +G+ LYG DY+DI A  R H      + CD FH G   + +  +
Sbjct:  228 VMVKYVRREIRTLTDDEREELFDAMFTLWDVRVDTGNGKELYGDDYADIYAINRLHFKAAMSETCDHFHDGLGFLTSHSL 307
[Close]
BLAST of mRNA_P-wetherbeei_contig5866.2.2 vs. uniprot
Match: A0A6H5K0B2_9PHAE (TYR protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0B2_9PHAE)

HSP 1 Score: 72.4 bits (176), Expect = 1.680e-10
Identity = 35/78 (44.87%), Postives = 46/78 (58.97%), Query Frame = 2 
Query:    2 VMCKYVRREIRSLTEADRNELMDAMNTLWKLPTADGRALYGPDYSDIRAFARFHH-GGTHPDCDAFHGGTATVCTQKM 232
            V  KYVRREIRSL + +R+++ DAM  LW +   +G+ LYGPDY D+    +FH  G +  DCD  H G     T  M
Sbjct:  233 VFSKYVRREIRSLFDDERDQMFDAMKVLWDVGIDEGKVLYGPDYLDVWTIDQFHQIGASDLDCDHLHDGIGFGVTHSM 310
[Close]
BLAST of mRNA_P-wetherbeei_contig5866.2.2 vs. uniprot
Match: A0A7S2CDF7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CDF7_9STRA)

HSP 1 Score: 68.2 bits (165), Expect = 2.320e-10
Identity = 34/73 (46.58%), Postives = 44/73 (60.27%), Query Frame = 2 
Query:    2 VMCKYVRREIRSLTEADRNELMDAMNTLWKLPTADGRALYGPDYSDIRAFARFHH-GGTHPDCDAFHGGTATV 217
            V CKYVRREIR+L++ DR+  +D +  L  LPT DG+ LYG  Y D   F + H   G + DCD +H G   V
Sbjct:   46 VTCKYVRREIRTLSDIDRDLFLDTVGVLQNLPTEDGQVLYGSKYKDKDYFIKLHLLYGANDDCDNWHEGAGFV 118
[Close]
BLAST of mRNA_P-wetherbeei_contig5866.2.2 vs. uniprot
Match: D8LC42_ECTSI (TYRosinase family member (Tyr-4) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LC42_ECTSI)

HSP 1 Score: 71.6 bits (174), Expect = 3.030e-10
Identity = 37/80 (46.25%), Postives = 49/80 (61.25%), Query Frame = 2 
Query:    2 VMCKYVRREIRSLTEADRNELMDAMNTLWKLPT--ADGRALYGPDYSDIRAFARFHH-GGTHPDCDAFHGGTATVCTQKM 232
            VM KYVRREIR+LT+ +R EL DAM  LW++     +G+ LYG DY+DI A  R H+   +   CD FH G   + +  M
Sbjct:  251 VMVKYVRREIRTLTDDEREELFDAMFALWEVRVDGGNGKELYGEDYADIYAINRLHYKAASQSSCDHFHDGLGFLTSHSM 330
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig5866.2.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LC28_ECTSI6.310e-1254.93TYRosinase family member (Tyr-4) n=1 Tax=Ectocarpu... [more]
D8LC46_ECTSI8.790e-1254.93Tyrosinase_Cu-bd domain-containing protein n=3 Tax... [more]
D7FSP4_ECTSI1.120e-1155.22PKD domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A6H5J7R8_9PHAE1.170e-1153.52TYR protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 Ta... [more]
D7G0K0_ECTSI3.970e-1150.68Tyrosinase n=1 Tax=Ectocarpus siliculosus TaxID=28... [more]
A0A7S2XX66_9STRA6.450e-1151.43Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A6H5JRR4_9PHAE1.240e-1047.50TYR protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0... [more]
A0A6H5K0B2_9PHAE1.680e-1044.87TYR protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 Ta... [more]
A0A7S2CDF7_9STRA2.320e-1046.58Hypothetical protein (Fragment) n=1 Tax=Florenciel... [more]
D8LC42_ECTSI3.030e-1046.25TYRosinase family member (Tyr-4) n=1 Tax=Ectocarpu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig5866contigP-wetherbeei_contig5866:406..1663 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size893
Hectar predicted targeting categoryother localisation
Exons2
Cds size567
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186867.9266045-UTR-P-wetherbeei_contig5866:405..7311683186867.9266045-UTR-P-wetherbeei_contig5866:405..731Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig5866 406..731 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186867.9359434-CDS-P-wetherbeei_contig5866:731..11521683186867.9359434-CDS-P-wetherbeei_contig5866:731..1152Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5866 732..1152 -
1683186867.94478-CDS-P-wetherbeei_contig5866:1517..16631683186867.94478-CDS-P-wetherbeei_contig5866:1517..1663Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5866 1518..1663 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig5866.2.2prot_P-wetherbeei_contig5866.2.2Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig5866 732..1663 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig5866.2.2

>prot_P-wetherbeei_contig5866.2.2 ID=prot_P-wetherbeei_contig5866.2.2|Name=mRNA_P-wetherbeei_contig5866.2.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=189bp
GDVQVRAAGDSFADGGGPQRTDGRDEYLVEASDRRWPGPLRPRLLRHQSV
REVSPRWHPSRLRCLPWRYGNSMHSKNDMGFYGASTAGLMRIWIASFRCL
GHTAQVELPSDVCTALALAELAAGRSFGCFWITATHLLPFPPRFARQAWG
FRSATSSSQTSLSEWFSSSTRRCIHDAACERQESLSIS*
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mRNA from alignment at P-wetherbeei_contig5866:406..1663-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig5866.2.2 ID=mRNA_P-wetherbeei_contig5866.2.2|Name=mRNA_P-wetherbeei_contig5866.2.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1258bp|location=Sequence derived from alignment at P-wetherbeei_contig5866:406..1663- (Phaeothamnion wetherbeei SAG_119_79)
GGTGATGTGCAAGTACGTGCGGCGGGAGATTCGTTCGCTGACGGAGGCGG
ACCGCAACGAACTGATGGACGCGATGAATACCTTGTGGAAGCTTCCGACC
GCCGATGGCCGGGCCCTCTACGGCCCCGACTACTCCGACATCAGAGGTCC
GCCTTATCTCCAGGGCCCGTCCGTCCATTCCCGTCTCCCGCGGCCGGCTG
GAATGACATGGTATTGATCTTGCAATGTTCCTGGAGGTGCTTTGTTTTCG
GTGTTCATTGAAGCCAGTCACGGGCATGGAACGATACGGCCGGCGGGTTG
GGGACCCCCGTCGAGGCCTGGACTACTGCTGTGGCGGGGCGGGGCGGCGA
AACGTGACTGCAAAGCGCCGCTTCTGCCTGTTGCCTGTCCTGCCTTTCAT
CGTTGGTAACGGTATCTGATCTGACTTTTCTGCAACGCTCGATTCTAACC
CAGAAAAGTCGCCGCCGCCGGAAACGTTGCCTCCACCTATTTCGCTTGGT
GCACGCCGCAGCGTTCGCGAGGTTTCACCACGGTGGCACCCATCCAGACT
GCGATGCCTTCCATGGAGGTACGGCAACAGTATGCACTCAAAAAATGACA
TGGGTTTCTACGGGGCATCGACGGCTGGTCTCATGCGCATATGGATCGCT
TCTTTCCGGTGCTTGGGTCATACAGCTCAGGTTGAACTGCCCTCTGATGT
CTGTACTGCTCTTGCTTTGGCCGAGCTTGCTGCTGGCCGCTCCTTCGGTT
GCTTCTGGATAACCGCGACGCATCTCCTGCCCTTTCCGCCTCGCTTCGCG
CGTCAGGCCTGGGGTTTCCGATCAGCCACTTCCTCATCACAAACCTCTTT
GAGCGAGTGGTTCAGCTCGTCAACCCGAAGGTGCATCCACGACGCGGCAT
GCGAAAGACAAGAGTCTCTCTCAATCAGCTGACTCGTGGCAGGCTTTTTT
GTTCTTTCAGTTCTCTCAGGCCCGAAATTGTCCTCCCGTTCACTCTTTTG
CGGGTCTCAGCGACCCCTGGTGCCCGCTGCCCAGTCGCCTCCCTGTCTGC
GGACGCGGGTTTTCCGGATTTTCTCTCTGGAAAGCGCTCTGTTAACTGGT
CTGACACCTGTATGTGTCAGCCCTTCCACGTCTAAGTCCCGTGCTCCGCC
ACTGGCCGCACATCTATCCCAAGGTTTGCCTGCCGTACTGGGAATACTCG
ATAGATGACCACATCATCAAGACGGCGTTTGACGGCGACTACACCCGCTT
GCAGGAGG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig5866:406..1663-

>mRNA_P-wetherbeei_contig5866.2.2 ID=mRNA_P-wetherbeei_contig5866.2.2|Name=mRNA_P-wetherbeei_contig5866.2.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=567bp|location=Sequence derived from alignment at P-wetherbeei_contig5866:406..1663- (Phaeothamnion wetherbeei SAG_119_79)
GGTGATGTGCAAGTACGTGCGGCGGGAGATTCGTTCGCTGACGGAGGCGG
ACCGCAACGAACTGATGGACGCGATGAATACCTTGTGGAAGCTTCCGACC
GCCGATGGCCGGGCCCTCTACGGCCCCGACTACTCCGACATCAGAGCGTT
CGCGAGGTTTCACCACGGTGGCACCCATCCAGACTGCGATGCCTTCCATG
GAGGTACGGCAACAGTATGCACTCAAAAAATGACATGGGTTTCTACGGGG
CATCGACGGCTGGTCTCATGCGCATATGGATCGCTTCTTTCCGGTGCTTG
GGTCATACAGCTCAGGTTGAACTGCCCTCTGATGTCTGTACTGCTCTTGC
TTTGGCCGAGCTTGCTGCTGGCCGCTCCTTCGGTTGCTTCTGGATAACCG
CGACGCATCTCCTGCCCTTTCCGCCTCGCTTCGCGCGTCAGGCCTGGGGT
TTCCGATCAGCCACTTCCTCATCACAAACCTCTTTGAGCGAGTGGTTCAG
CTCGTCAACCCGAAGGTGCATCCACGACGCGGCATGCGAAAGACAAGAGT
CTCTCTCAATCAGCTGA
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