mRNA_P-wetherbeei_contig5865.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig5865.1.1
Unique NamemRNA_P-wetherbeei_contig5865.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig5865.1.1 vs. uniprot
Match: A0A7S3USV3_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3USV3_HETAK)

HSP 1 Score: 84.0 bits (206), Expect = 1.210e-14
Identity = 40/91 (43.96%), Postives = 57/91 (62.64%), Query Frame = 2 
Query: 1853 DCVFLLDLQAGPE----GTAE-LRPAWVDVLHGEFVGVTCPLAMNVTVESNRIDWDVVFPKAVNYSVLLTVVCLMQIALLFKQLHYSPTQG 2110
            DC FLL L+AGP     G A+ L   W   L G      C L++ +  ++ R+DW+  + KAVNYS+++T+VCL+Q+ LLFKQLH+S  Q 
Sbjct:   57 DCAFLLQLEAGPRVKPLGDADRLASKWAGRLEGTVRSPNCGLSLRLGAQALRVDWEDAYRKAVNYSIMMTIVCLLQLVLLFKQLHFSQNQA 147
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BLAST of mRNA_P-wetherbeei_contig5865.1.1 vs. uniprot
Match: A0A7S2HGS0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2HGS0_9STRA)

HSP 1 Score: 80.9 bits (198), Expect = 1.710e-12
Identity = 59/196 (30.10%), Postives = 95/196 (48.47%), Query Frame = 2 
Query:  401 NAQEELARRQRQRMFQTGLLLCFLLLMLD-YRTSPAPTTGTRGRASGAGGATRVPP--PIASQSLEELKQVLAADAPPNISFPVNASGIYKGTWQKLEP--TQVRTLIPQLLSDAETTAADAARRGTNATTTLDVAEGEVQFRLYSQPFEGAKDELSLIWGLGRIVAGRHYTAQDTPYNIQGVFFNQYGRLRAIAS 973
            +A EE  RR RQRMFQTGL +C ++LMLD + T P P    +           VP   P+  + L +LK+VL         +P NA+G+Y+G WQ  +     + ++    LS    T  +   +       L    G+   +L  +P  G  +ELSL+WG  ++     +    + +  QGVFF+++GR+  + +
Sbjct:    5 SANEEHLRRHRQRMFQTGLFICLMMLMLDAHSTHPIPPNARKDDT--------VPEEDPVEKKPLLQLKRVLEKQQGDGRLYPTNATGVYQGAWQVRDDRYAPIESMHETFLSTPNWTVMEKPIK-------LMARTGKFLMQLNMEPLTGI-EELSLVWGNFKVSGNPSHPNIYSSFT-QGVFFHKFGRVTMVTN 183
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BLAST of mRNA_P-wetherbeei_contig5865.1.1 vs. uniprot
Match: K8Z319_NANGC (RING-type domain-containing protein n=3 Tax=Monodopsidaceae TaxID=425072 RepID=K8Z319_NANGC)

HSP 1 Score: 68.2 bits (165), Expect = 5.070e-8
Identity = 33/77 (42.86%), Postives = 50/77 (64.94%), Query Frame = 2 
Query: 1880 AGPEGTAELRPAWVDVLHGEFVGVTCPLAMNVTVESNRIDWDVVFPKAVNYSVLLTVVCLMQIALLFKQLHYSPTQG 2110
            A  E  A L  A  D   G      C +A++V+ ++ R+DW   + KAVNYS+++T+VC++QIALLF+QL++S TQ 
Sbjct:  419 AAAESQARLELA--DGFEGTLTSPECDVALSVSSQAIRLDWTQAYRKAVNYSIIVTLVCVLQIALLFRQLYFSRTQA 493
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BLAST of mRNA_P-wetherbeei_contig5865.1.1 vs. uniprot
Match: A0A7S3YA63_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YA63_HETAK)

HSP 1 Score: 61.2 bits (147), Expect = 3.250e-6
Identity = 55/204 (26.96%), Postives = 85/204 (41.67%), Query Frame = 2 
Query:  383 DEGRGFNAQEELARRQRQR--MFQTGLLLCFLLLMLDYRTSPAPTTGTRGRASGAGGATRVPPPIASQSLEELKQVLAADAPPNISFPVNASGIYKGTWQKLEPTQVRTLIPQLLSDAETTAADAARRGTNATTTLDVAEGEVQFRLYSQPFEGAKDELSLIWGLGRIVAG-----RHYTAQDTPYNIQGVFFNQYGRLRAIAS 973
            D G G N  E   ++QRQR  MFQTGL +C +LL+LD     A           +    R+ P         L  ++ A +      P N SG+Y G W  +      + +   L DA          G     TL  + G    ++ S+   G++D + LI G+ R   G     R   ++   ++ QG+FF++ G L A  +
Sbjct:    6 DNGLGNNGAEPTLQQQRQRRRMFQTGLFICMMLLLLDSSNEDARARAQERAKQNSTSLERMDP--------NLSDMVNAQSVYKNKIPGNVSGLYSGIWNLVSEQNATSEMSFHLPDAYL-------EGKTGNNTLQESAGLGIIQIQSRYMTGSRD-VDLIQGVFRAFNGMRTNTRKAISRSVIFSFQGLFFHKTGTLVAAGN 193
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig5865.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A7S3USV3_HETAK1.210e-1443.96Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S2HGS0_9STRA1.710e-1230.10Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]
K8Z319_NANGC5.070e-842.86RING-type domain-containing protein n=3 Tax=Monodo... [more]
A0A7S3YA63_HETAK3.250e-626.96Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig5865contigP-wetherbeei_contig5865:47..3205 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size2340
Hectar predicted targeting categoryother localisation
Exons3
Cds size1752
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186867.832347-UTR-P-wetherbeei_contig5865:46..4101683186867.832347-UTR-P-wetherbeei_contig5865:46..410Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig5865 47..410 +
1683186867.8727427-UTR-P-wetherbeei_contig5865:2981..32051683186867.8727427-UTR-P-wetherbeei_contig5865:2981..3205Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig5865 2982..3205 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186867.84303-CDS-P-wetherbeei_contig5865:410..9751683186867.84303-CDS-P-wetherbeei_contig5865:410..975Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5865 411..975 +
1683186867.8535771-CDS-P-wetherbeei_contig5865:1298..22481683186867.8535771-CDS-P-wetherbeei_contig5865:1298..2248Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5865 1299..2248 +
1683186867.864188-CDS-P-wetherbeei_contig5865:2744..29811683186867.864188-CDS-P-wetherbeei_contig5865:2744..2981Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5865 2745..2981 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig5865.1.1prot_P-wetherbeei_contig5865.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig5865 411..2981 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig5865.1.1

>prot_P-wetherbeei_contig5865.1.1 ID=prot_P-wetherbeei_contig5865.1.1|Name=mRNA_P-wetherbeei_contig5865.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=584bp
MLAGQFDEGRGFNAQEELARRQRQRMFQTGLLLCFLLLMLDYRTSPAPTT
GTRGRASGAGGATRVPPPIASQSLEELKQVLAADAPPNISFPVNASGIYK
GTWQKLEPTQVRTLIPQLLSDAETTAADAARRGTNATTTLDVAEGEVQFR
LYSQPFEGAKDELSLIWGLGRIVAGRHYTAQDTPYNIQGVFFNQYGRLRA
IASFRGSRVKLVWTKSGGGDTSPPGDHHPRRLAASDGRRLRDGSKGWTGA
GSGGGSSDGFGFPGSGFAGCGRAGRTASSPRFSADQLSFEVTWPDGDTVV
RIDPEGKIVRVPAATAERFTALNTAAAAMGVEWLLDDDTADASRSWWKAF
AGRSRRLARQAAPPHTVPSLRGVAVAPQLLGVAAAAQPGAAAVSGAVLPT
TTAVAAQQGEVAAADAAADVGAGSLTAGGGRNEGSGGNGADAAAPAAAAA
AAAAAALLETELGVSVWPSEARQQEPQVGMQVPSIFDIKPRVESSHDCVF
LLDLQAGPEGTAELRPAWVDVLHGEFVGVTCPLAMNVTVESNRIDWDVVF
PKAVNYSVLLTVVCLMQIALLFKQLHYSPTQGE*
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mRNA from alignment at P-wetherbeei_contig5865:47..3205+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig5865.1.1 ID=mRNA_P-wetherbeei_contig5865.1.1|Name=mRNA_P-wetherbeei_contig5865.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=3159bp|location=Sequence derived from alignment at P-wetherbeei_contig5865:47..3205+ (Phaeothamnion wetherbeei SAG_119_79)
CGATTTTGGCCTTCGGCTCCAAACTCCTAGTTTTTTCACACGCATCGCGC
ATCGGATGCGTTAGAATTATTCCGCTGGGAAGATTTCGAACTGCTGCTCT
TGCTCAGTTTTTGCCATTGTGTGCAGCGGCGGGTAGGTTGTCACGAGCGG
ACAAGCGACGTATTGTCGAAAATCCGTTTTCCTAAATCCAAAGGAGCACG
TCGAGAAGGAGGAGGAGGCGCATTTCGTTATCCTGCAAAATACTGTGCAG
CGGCGGAAAGCCCGTCAACAACACGTGGGAGAAACACCGGCGCGACTTCG
GCCGGCCCGTTGCGGCGCCTTGCCATCAGCTGTACACCGCGAACCCTTTC
ACACACTTTGGCAAATGCTCGCCGGGCAGTTCGATGAAGGTCGGGGCTTC
AATGCGCAAGAGGAGCTCGCTCGGCGGCAACGCCAGCGCATGTTCCAGAC
AGGCCTCCTTTTGTGCTTCCTTCTCCTCATGCTGGATTATCGGACGTCGC
CGGCGCCGACCACCGGAACCCGCGGGCGCGCCTCGGGCGCCGGTGGCGCC
ACGCGCGTCCCGCCCCCAATAGCCTCTCAGAGCCTCGAGGAGCTCAAGCA
GGTGCTGGCGGCTGATGCGCCGCCGAACATCAGCTTTCCCGTTAATGCCT
CGGGCATCTACAAAGGCACGTGGCAAAAGCTGGAGCCGACGCAAGTCCGT
ACACTGATACCGCAGCTCTTGTCGGATGCCGAGACGACCGCGGCGGATGC
GGCGCGGCGTGGCACGAACGCGACCACCACCTTGGATGTGGCTGAGGGAG
AGGTGCAGTTCCGGCTGTACTCGCAGCCGTTTGAAGGCGCCAAGGACGAG
CTGAGCCTGATTTGGGGCCTGGGCAGAATCGTCGCGGGGCGCCACTACAC
AGCGCAGGATACCCCATACAACATACAAGGTGGGCAACTGGTTTGTTGCA
GCGTTGTGCTTGTTGGACACTCAAGACGAGAGAAAATCCGGGGTTACATA
TCGGTGGCGGGATTAGGGCGGGGGTGGCTTCCTTTCGCTCCCAAAATTGG
TTCTGGTCTCTCCACAGTGGAAAGATGGAGCTTCCTCTTTGCTAGTTGTT
TTCAAAGGAATGGAAAGAATCGCTCGGCGATGCCACGCCGACCTTTTTTC
CGGCTTTTTTTCCCCCCGCTGACTTTCCCGATTGTTTTTTCCTCTTTTTT
TCTTGTGTGTTCCTCTCAAACCAACCCTCATCCCCGCTCGCTCGTCTTCT
AGGCGTTTTCTTCAACCAGTACGGCCGGCTGCGCGCCATCGCCAGCTTTC
GCGGCAGCCGCGTAAAGCTGGTCTGGACGAAGTCGGGTGGTGGTGACACT
TCACCACCCGGAGACCACCATCCCAGGCGTCTAGCTGCATCGGATGGAAG
GAGGCTCCGCGACGGCAGCAAGGGTTGGACGGGCGCTGGCAGCGGAGGCG
GCAGCAGCGATGGCTTTGGCTTTCCCGGCTCTGGCTTCGCCGGCTGTGGC
AGGGCGGGCAGGACGGCGAGCAGCCCCCGGTTCAGCGCAGATCAGCTGTC
CTTCGAGGTGACGTGGCCGGACGGGGACACAGTCGTCCGCATCGACCCGG
AAGGGAAGATAGTCCGGGTTCCGGCGGCGACAGCGGAGCGCTTCACGGCA
CTCAACACCGCAGCGGCGGCAATGGGCGTGGAATGGCTTCTGGATGATGA
CACCGCGGACGCTTCGCGGTCGTGGTGGAAGGCGTTTGCTGGGCGGTCAC
GCCGCCTCGCACGGCAGGCGGCGCCGCCCCACACGGTACCGTCCCTCCGC
GGTGTTGCAGTGGCCCCGCAGCTGCTGGGTGTCGCCGCTGCCGCGCAGCC
TGGAGCGGCGGCCGTTTCGGGGGCAGTGCTGCCCACCACGACAGCGGTAG
CAGCACAGCAAGGAGAAGTGGCGGCGGCGGATGCCGCTGCCGACGTGGGT
GCTGGGAGCCTGACCGCCGGAGGCGGCCGCAACGAGGGAAGCGGGGGGAA
TGGCGCCGACGCTGCCGCTCCCGCTGCCGCCGCTGCTGCTGCTGCGGCGG
CGGCGTTGTTGGAGACGGAGCTCGGCGTGTCGGTATGGCCGTCCGAAGCG
CGGCAGCAAGAGCCGCAGGTGGGGATGCAGGTGCCAAGTATCTTCGACAT
CAAGCCGCGCGTCGAGAGCAGCCACGACTGCGTCTTCCTTCTCGACCTTC
AGGTGTGGACTGCCGGGGGGGGTGGGCTTTTTAGTTGATCCCTTGCCATT
CTTTTTCTTCCATTTAAGTTTTTTCCTCTTTCCCCGTCCTGATCCGTTAT
GCGTTTGAGTGGCAGCGGTGAGGTAATCGAATTATCCCAGTTTGGTTGCT
TGAGCCCGGGGTTGCTGGCTTTTTACTGCGTTCTGTCTCGTGCTGCCATA
TAAGTCTTCTCATAACAGCACGCGTTCTCTAGCTCCCGATTCGGGGGAAG
TTTTCCCTGCAAAAAAGTTTTGGAAATGCCCCACCAGGCTGCCTGTTGTC
CTCCGTTACTTTTGGCCTCTCTACGTTCGCTTCGTTCCAGCCTGCTATTC
GTCCGTCAAGCCAGCCGCCTAATCTCCCATCCGCTGATTGTCTGAATCGC
GGTCCGGACCGCCACCCCAACCGCTTCCTGTCTGGTCGGCCGGCCCGCCC
GGAACATGACTGACTGACTGCTGGCAACGGCTGGCAATGGCCGAGCAGGC
GGGTCCGGAGGGGACGGCAGAGCTGCGGCCGGCGTGGGTAGACGTGTTGC
ATGGCGAGTTTGTGGGCGTGACGTGCCCGCTGGCAATGAATGTGACGGTG
GAGTCGAATCGCATCGACTGGGACGTGGTCTTCCCCAAGGCCGTCAACTA
CAGCGTGCTGCTCACCGTTGTGTGCCTCATGCAGATCGCGCTCCTCTTTA
AGCAGCTACACTACAGCCCCACACAGGGTGAGTAGACCAGTGAGCGAGCT
GGCTGACGAGTTTGCTGATTGCCTTTGCACCCCACAGGCCAAGTGGCAGG
CCCGGTGCGGCTGGATCGGGCGTGAGGGGAGAGCGGAATCCAAGGCTGGG
GAGACAGGAAAAGGCGAATGTGTCCGATAACATTCATCGCTATCTAACCC
GCTGGTTTTGGCGGGAAGTAGGTAGCATGGTTCCGTCTGTTTCCTCTGGA
TCAACCAAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig5865:47..3205+

>mRNA_P-wetherbeei_contig5865.1.1 ID=mRNA_P-wetherbeei_contig5865.1.1|Name=mRNA_P-wetherbeei_contig5865.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1752bp|location=Sequence derived from alignment at P-wetherbeei_contig5865:47..3205+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCTCGCCGGGCAGTTCGATGAAGGTCGGGGCTTCAATGCGCAAGAGGA
GCTCGCTCGGCGGCAACGCCAGCGCATGTTCCAGACAGGCCTCCTTTTGT
GCTTCCTTCTCCTCATGCTGGATTATCGGACGTCGCCGGCGCCGACCACC
GGAACCCGCGGGCGCGCCTCGGGCGCCGGTGGCGCCACGCGCGTCCCGCC
CCCAATAGCCTCTCAGAGCCTCGAGGAGCTCAAGCAGGTGCTGGCGGCTG
ATGCGCCGCCGAACATCAGCTTTCCCGTTAATGCCTCGGGCATCTACAAA
GGCACGTGGCAAAAGCTGGAGCCGACGCAAGTCCGTACACTGATACCGCA
GCTCTTGTCGGATGCCGAGACGACCGCGGCGGATGCGGCGCGGCGTGGCA
CGAACGCGACCACCACCTTGGATGTGGCTGAGGGAGAGGTGCAGTTCCGG
CTGTACTCGCAGCCGTTTGAAGGCGCCAAGGACGAGCTGAGCCTGATTTG
GGGCCTGGGCAGAATCGTCGCGGGGCGCCACTACACAGCGCAGGATACCC
CATACAACATACAAGGCGTTTTCTTCAACCAGTACGGCCGGCTGCGCGCC
ATCGCCAGCTTTCGCGGCAGCCGCGTAAAGCTGGTCTGGACGAAGTCGGG
TGGTGGTGACACTTCACCACCCGGAGACCACCATCCCAGGCGTCTAGCTG
CATCGGATGGAAGGAGGCTCCGCGACGGCAGCAAGGGTTGGACGGGCGCT
GGCAGCGGAGGCGGCAGCAGCGATGGCTTTGGCTTTCCCGGCTCTGGCTT
CGCCGGCTGTGGCAGGGCGGGCAGGACGGCGAGCAGCCCCCGGTTCAGCG
CAGATCAGCTGTCCTTCGAGGTGACGTGGCCGGACGGGGACACAGTCGTC
CGCATCGACCCGGAAGGGAAGATAGTCCGGGTTCCGGCGGCGACAGCGGA
GCGCTTCACGGCACTCAACACCGCAGCGGCGGCAATGGGCGTGGAATGGC
TTCTGGATGATGACACCGCGGACGCTTCGCGGTCGTGGTGGAAGGCGTTT
GCTGGGCGGTCACGCCGCCTCGCACGGCAGGCGGCGCCGCCCCACACGGT
ACCGTCCCTCCGCGGTGTTGCAGTGGCCCCGCAGCTGCTGGGTGTCGCCG
CTGCCGCGCAGCCTGGAGCGGCGGCCGTTTCGGGGGCAGTGCTGCCCACC
ACGACAGCGGTAGCAGCACAGCAAGGAGAAGTGGCGGCGGCGGATGCCGC
TGCCGACGTGGGTGCTGGGAGCCTGACCGCCGGAGGCGGCCGCAACGAGG
GAAGCGGGGGGAATGGCGCCGACGCTGCCGCTCCCGCTGCCGCCGCTGCT
GCTGCTGCGGCGGCGGCGTTGTTGGAGACGGAGCTCGGCGTGTCGGTATG
GCCGTCCGAAGCGCGGCAGCAAGAGCCGCAGGTGGGGATGCAGGTGCCAA
GTATCTTCGACATCAAGCCGCGCGTCGAGAGCAGCCACGACTGCGTCTTC
CTTCTCGACCTTCAGGCGGGTCCGGAGGGGACGGCAGAGCTGCGGCCGGC
GTGGGTAGACGTGTTGCATGGCGAGTTTGTGGGCGTGACGTGCCCGCTGG
CAATGAATGTGACGGTGGAGTCGAATCGCATCGACTGGGACGTGGTCTTC
CCCAAGGCCGTCAACTACAGCGTGCTGCTCACCGTTGTGTGCCTCATGCA
GATCGCGCTCCTCTTTAAGCAGCTACACTACAGCCCCACACAGGGTGAGT
AG
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