mRNA_P-wetherbeei_contig5863.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig5863.2.1
Unique NamemRNA_P-wetherbeei_contig5863.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig5863.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig5863contigP-wetherbeei_contig5863:3044..3457 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog32264.tetur28g00420.1
Preferred namePOLR3E
PFAMsSin_N
Model size414
Max annot lvl33208|Metazoa
KEGG rclassRC02795
KEGG koko:K14721
KEGG ReactionR00435,R00441,R00442,R00443
KEGG Pathwayko00230,ko00240,ko03020,ko04623,ko05169,map00230,map00240,map03020,map04623,map05169
KEGG ModuleM00181
Hectar predicted targeting categoryother localisation
GOsGO:0000428,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005666,GO:0005737,GO:0005829,GO:0030880,GO:0031974,GO:0031981,GO:0032991,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0055029,GO:0061695,GO:0070013,GO:1902494,GO:1990234
Exons1
Evalue1.83e-11
EggNOG OGsKOG2354@1|root,KOG2354@2759|Eukaryota,38C3W@33154|Opisthokonta,3BCNR@33208|Metazoa,3D1A0@33213|Bilateria,41W3K@6656|Arthropoda
DescriptionDNA-directed RNA polymerase activity. It is involved in the biological process described with transcription, DNA-templated
Cds size414
COG categoryK
BRITEbr01611,ko00000,ko00001,ko00002,ko03021
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186867.7673733-CDS-P-wetherbeei_contig5863:3043..34571683186867.7673733-CDS-P-wetherbeei_contig5863:3043..3457Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5863 3044..3457 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig5863.2.1prot_P-wetherbeei_contig5863.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig5863 3044..3457 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig5863.2.1

>prot_P-wetherbeei_contig5863.2.1 ID=prot_P-wetherbeei_contig5863.2.1|Name=mRNA_P-wetherbeei_contig5863.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=138bp
EPAALLRHLETRAVMLRGNWALASELCHPSPHGVGLRDARDVVLAVLQRY
GAVTRADVTPARLGVSPEQLEAILSEAAAFDPAGQRWVLRLPDDLEGAVR
FPEVFAASERWWRARVAALMRLYHQGHGTSATAAAKAR
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mRNA from alignment at P-wetherbeei_contig5863:3044..3457-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig5863.2.1 ID=mRNA_P-wetherbeei_contig5863.2.1|Name=mRNA_P-wetherbeei_contig5863.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=414bp|location=Sequence derived from alignment at P-wetherbeei_contig5863:3044..3457- (Phaeothamnion wetherbeei SAG_119_79)
GAGCCGGCGGCGCTGCTGCGTCACCTCGAGACTCGTGCCGTGATGCTCCG
CGGCAACTGGGCCCTGGCCAGCGAGCTCTGCCACCCTAGCCCGCACGGCG
TCGGACTCCGCGACGCCCGCGATGTCGTTCTGGCCGTTTTGCAGCGTTAC
GGAGCAGTCACACGCGCGGACGTGACGCCAGCACGCCTCGGCGTCTCGCC
GGAGCAGCTGGAGGCGATTCTGTCGGAGGCGGCAGCGTTCGACCCGGCCG
GCCAGCGATGGGTGCTGCGGCTTCCGGACGACCTGGAGGGGGCCGTCCGT
TTCCCAGAGGTATTCGCGGCGTCGGAGCGGTGGTGGCGGGCGCGCGTGGC
GGCGCTGATGAGGCTATACCACCAGGGGCACGGCACATCGGCCACCGCTG
CCGCCAAGGCGCGG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig5863:3044..3457-

>mRNA_P-wetherbeei_contig5863.2.1 ID=mRNA_P-wetherbeei_contig5863.2.1|Name=mRNA_P-wetherbeei_contig5863.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=414bp|location=Sequence derived from alignment at P-wetherbeei_contig5863:3044..3457- (Phaeothamnion wetherbeei SAG_119_79)
GAGCCGGCGGCGCTGCTGCGTCACCTCGAGACTCGTGCCGTGATGCTCCG
CGGCAACTGGGCCCTGGCCAGCGAGCTCTGCCACCCTAGCCCGCACGGCG
TCGGACTCCGCGACGCCCGCGATGTCGTTCTGGCCGTTTTGCAGCGTTAC
GGAGCAGTCACACGCGCGGACGTGACGCCAGCACGCCTCGGCGTCTCGCC
GGAGCAGCTGGAGGCGATTCTGTCGGAGGCGGCAGCGTTCGACCCGGCCG
GCCAGCGATGGGTGCTGCGGCTTCCGGACGACCTGGAGGGGGCCGTCCGT
TTCCCAGAGGTATTCGCGGCGTCGGAGCGGTGGTGGCGGGCGCGCGTGGC
GGCGCTGATGAGGCTATACCACCAGGGGCACGGCACATCGGCCACCGCTG
CCGCCAAGGCGCGG
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