mRNA_P-wetherbeei_contig58623.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig58623.1.1
Unique NamemRNA_P-wetherbeei_contig58623.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig58623.1.1 vs. uniprot
Match: A0A7C4XSB2_9HYPH (Cupin domain-containing protein n=1 Tax=Hyphomicrobiales bacterium TaxID=1909294 RepID=A0A7C4XSB2_9HYPH)

HSP 1 Score: 149 bits (375), Expect = 1.710e-41
Identity = 67/85 (78.82%), Postives = 70/85 (82.35%), Query Frame = 1
Query:    1 MAHDVPGKHDGVHWHEPSGQSRAGFGQFKKQPTPYDAFMEAEGIPCFRSNGIRTVLDLPLAPWKRTGGRGTYIQLYGTETKWGMY 255
            M HDVPGK D  HWHEPSG  +AGFGQFKKQPTPYDAFMEAEG+P FR  GI  V +LPL PWKRTGGRG YIQLYGTETKWG Y
Sbjct:    1 MPHDVPGKGDTTHWHEPSGLKKAGFGQFKKQPTPYDAFMEAEGLPVFRDIGISKVQNLPLVPWKRTGGRGHYIQLYGTETKWGCY 85          
BLAST of mRNA_P-wetherbeei_contig58623.1.1 vs. uniprot
Match: A0A536Z1Q2_9PROT (Cupin (Fragment) n=1 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A536Z1Q2_9PROT)

HSP 1 Score: 135 bits (340), Expect = 1.050e-39
Identity = 60/81 (74.07%), Postives = 67/81 (82.72%), Query Frame = 1
Query:   13 VPGKHDGVHWHEPSGQSRAGFGQFKKQPTPYDAFMEAEGIPCFRSNGIRTVLDLPLAPWKRTGGRGTYIQLYGTETKWGMY 255
            +P + D  HWHEP+G  +AG+G+FKKQPTPYDAFME EGIP FR  GIR V DLPLAPWKRTGGRG YIQL+GTETKWG Y
Sbjct:    1 MPHEKDQTHWHEPTGTRKAGYGEFKKQPTPYDAFMEFEGIPVFRGIGIRKVQDLPLAPWKRTGGRGHYIQLHGTETKWGCY 81          
BLAST of mRNA_P-wetherbeei_contig58623.1.1 vs. uniprot
Match: A0A536SCV5_9PROT (Cupin domain-containing protein (Fragment) n=1 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A536SCV5_9PROT)

HSP 1 Score: 137 bits (345), Expect = 1.780e-39
Identity = 60/81 (74.07%), Postives = 68/81 (83.95%), Query Frame = 1
Query:   13 VPGKHDGVHWHEPSGQSRAGFGQFKKQPTPYDAFMEAEGIPCFRSNGIRTVLDLPLAPWKRTGGRGTYIQLYGTETKWGMY 255
            +P + D  HWHEP+G  +AG+G+FKKQPTPYDAFME+EGIP FR  GIR V DLPLAPWKRTGGRG +IQLYGTETKWG Y
Sbjct:    1 MPHEKDQTHWHEPTGSRKAGYGEFKKQPTPYDAFMESEGIPVFRGIGIRKVQDLPLAPWKRTGGRGHFIQLYGTETKWGCY 81          
BLAST of mRNA_P-wetherbeei_contig58623.1.1 vs. uniprot
Match: A0A536XMU4_9PROT (Cupin domain-containing protein (Fragment) n=1 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A536XMU4_9PROT)

HSP 1 Score: 137 bits (346), Expect = 1.460e-38
Identity = 61/81 (75.31%), Postives = 68/81 (83.95%), Query Frame = 1
Query:   13 VPGKHDGVHWHEPSGQSRAGFGQFKKQPTPYDAFMEAEGIPCFRSNGIRTVLDLPLAPWKRTGGRGTYIQLYGTETKWGMY 255
            +P + D  HWHEP+G  +AGFG+FKKQPTPYDAFME+EGIP FR  GIR V DLPLAPWKRTGGRG YIQL+GTETKWG Y
Sbjct:    1 MPHEKDQTHWHEPTGTRKAGFGEFKKQPTPYDAFMESEGIPVFRGIGIRRVQDLPLAPWKRTGGRGHYIQLHGTETKWGSY 81          
BLAST of mRNA_P-wetherbeei_contig58623.1.1 vs. uniprot
Match: A0A536YP25_9PROT (Cupin domain-containing protein n=7 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A536YP25_9PROT)

HSP 1 Score: 137 bits (346), Expect = 2.630e-37
Identity = 61/81 (75.31%), Postives = 68/81 (83.95%), Query Frame = 1
Query:   13 VPGKHDGVHWHEPSGQSRAGFGQFKKQPTPYDAFMEAEGIPCFRSNGIRTVLDLPLAPWKRTGGRGTYIQLYGTETKWGMY 255
            +P + D  HWHEP+G  +AGFG+FKKQPTPYDAFME+EGIP FR  GIR V DLPLAPWKRTGGRG YIQL+GTETKWG Y
Sbjct:    1 MPHEKDQTHWHEPTGTRKAGFGEFKKQPTPYDAFMESEGIPVFRGIGIRRVQDLPLAPWKRTGGRGHYIQLHGTETKWGCY 81          
BLAST of mRNA_P-wetherbeei_contig58623.1.1 vs. uniprot
Match: A0A1H4UJY0_9HYPH (Cupin domain-containing protein n=2 Tax=Hyphomicrobiales TaxID=356 RepID=A0A1H4UJY0_9HYPH)

HSP 1 Score: 130 bits (328), Expect = 1.390e-34
Identity = 60/85 (70.59%), Postives = 67/85 (78.82%), Query Frame = 1
Query:    1 MAHDVPGKHDGVHWHEPSGQSRAGFGQFKKQPTPYDAFMEAEGIPCFRSNGIRTVLDLPLAPWKRTGGRGTYIQLYGTETKWGMY 255
            M HD     DGVHWHEPSG  +AGFG+F+KQPTPYDA+MEAEGIP FR  GI  V +LPL PWKR GG+G +IQLYGTETKWG Y
Sbjct:    1 MPHDSK---DGVHWHEPSGVKKAGFGEFQKQPTPYDAWMEAEGIPVFRDIGISKVQNLPLMPWKRRGGKGHFIQLYGTETKWGCY 82          
BLAST of mRNA_P-wetherbeei_contig58623.1.1 vs. uniprot
Match: A0A1F4DV98_9PROT (Cupin n=4 Tax=unclassified Betaproteobacteria TaxID=33809 RepID=A0A1F4DV98_9PROT)

HSP 1 Score: 130 bits (327), Expect = 1.800e-34
Identity = 57/81 (70.37%), Postives = 64/81 (79.01%), Query Frame = 1
Query:   13 VPGKHDGVHWHEPSGQSRAGFGQFKKQPTPYDAFMEAEGIPCFRSNGIRTVLDLPLAPWKRTGGRGTYIQLYGTETKWGMY 255
            +P   D +HWHEP+G  +AGFGQF+KQPTPYDAFMEAEG+P FR  GI  V DLPL  WKR GGRG YIQL+GTETKWG Y
Sbjct:    1 MPHDKDQMHWHEPAGNKKAGFGQFRKQPTPYDAFMEAEGVPVFRDIGISRVQDLPLVAWKRAGGRGHYIQLFGTETKWGCY 81          
BLAST of mRNA_P-wetherbeei_contig58623.1.1 vs. uniprot
Match: A0A239DR44_9BURK (Cupin domain-containing protein n=1 Tax=Noviherbaspirillum humi TaxID=1688639 RepID=A0A239DR44_9BURK)

HSP 1 Score: 129 bits (324), Expect = 4.650e-34
Identity = 57/81 (70.37%), Postives = 63/81 (77.78%), Query Frame = 1
Query:   13 VPGKHDGVHWHEPSGQSRAGFGQFKKQPTPYDAFMEAEGIPCFRSNGIRTVLDLPLAPWKRTGGRGTYIQLYGTETKWGMY 255
            +P   D  HWHEP+G  RAGFG+F+KQPTPYDAFME+EG+P FR  GIR V DLPL PWKR GGRG YIQL GTE KWG Y
Sbjct:    1 MPHDKDQTHWHEPAGNKRAGFGEFRKQPTPYDAFMESEGVPVFRDIGIRKVHDLPLVPWKRKGGRGHYIQLLGTEGKWGCY 81          
BLAST of mRNA_P-wetherbeei_contig58623.1.1 vs. uniprot
Match: UPI00156A0DAA (cupin domain-containing protein n=1 Tax=Ensifer adhaerens TaxID=106592 RepID=UPI00156A0DAA)

HSP 1 Score: 128 bits (322), Expect = 1.050e-33
Identity = 58/85 (68.24%), Postives = 64/85 (75.29%), Query Frame = 1
Query:    1 MAHDVPGKHDGVHWHEPSGQSRAGFGQFKKQPTPYDAFMEAEGIPCFRSNGIRTVLDLPLAPWKRTGGRGTYIQLYGTETKWGMY 255
            M  D  G   G HWHEP+G  +AG G+FKKQPTPYD FM  EGIP FR  GI  V D+PLAPWKRTGGRG+YIQLYGTETKWG +
Sbjct:    1 MHQDPLGGGTGTHWHEPAGNKKAGLGEFKKQPTPYDQFMVDEGIPIFRDLGIPNVRDIPLAPWKRTGGRGSYIQLYGTETKWGHH 85          
BLAST of mRNA_P-wetherbeei_contig58623.1.1 vs. uniprot
Match: A0A1F4HES5_9BURK (Cupin n=1 Tax=Burkholderiales bacterium RIFCSPHIGHO2_12_FULL_61_11 TaxID=1797557 RepID=A0A1F4HES5_9BURK)

HSP 1 Score: 128 bits (321), Expect = 1.510e-33
Identity = 56/81 (69.14%), Postives = 64/81 (79.01%), Query Frame = 1
Query:   13 VPGKHDGVHWHEPSGQSRAGFGQFKKQPTPYDAFMEAEGIPCFRSNGIRTVLDLPLAPWKRTGGRGTYIQLYGTETKWGMY 255
            +P   D  HWHEPSG  +AGFG+F+KQPTPYDAFME+EGIP FR  GI  V +L L PWKRTGG+G +IQLYGTETKWG Y
Sbjct:    1 MPHDKDQTHWHEPSGNKKAGFGEFRKQPTPYDAFMESEGIPVFRDIGISKVQNLALVPWKRTGGKGHFIQLYGTETKWGCY 81          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig58623.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7C4XSB2_9HYPH1.710e-4178.82Cupin domain-containing protein n=1 Tax=Hyphomicro... [more]
A0A536Z1Q2_9PROT1.050e-3974.07Cupin (Fragment) n=1 Tax=Betaproteobacteria bacter... [more]
A0A536SCV5_9PROT1.780e-3974.07Cupin domain-containing protein (Fragment) n=1 Tax... [more]
A0A536XMU4_9PROT1.460e-3875.31Cupin domain-containing protein (Fragment) n=1 Tax... [more]
A0A536YP25_9PROT2.630e-3775.31Cupin domain-containing protein n=7 Tax=Betaproteo... [more]
A0A1H4UJY0_9HYPH1.390e-3470.59Cupin domain-containing protein n=2 Tax=Hyphomicro... [more]
A0A1F4DV98_9PROT1.800e-3470.37Cupin n=4 Tax=unclassified Betaproteobacteria TaxI... [more]
A0A239DR44_9BURK4.650e-3470.37Cupin domain-containing protein n=1 Tax=Noviherbas... [more]
UPI00156A0DAA1.050e-3368.24cupin domain-containing protein n=1 Tax=Ensifer ad... [more]
A0A1F4HES5_9BURK1.510e-3369.14Cupin n=1 Tax=Burkholderiales bacterium RIFCSPHIGH... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig58623contigP-wetherbeei_contig58623:3..257 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size255
Hectar predicted targeting categoryother localisation
Exons1
Cds size255
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186867.7074904-CDS-P-wetherbeei_contig58623:2..2571683186867.7074904-CDS-P-wetherbeei_contig58623:2..257Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig58623 3..257 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig58623.1.1prot_P-wetherbeei_contig58623.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig58623 3..257 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig58623.1.1

>prot_P-wetherbeei_contig58623.1.1 ID=prot_P-wetherbeei_contig58623.1.1|Name=mRNA_P-wetherbeei_contig58623.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=85bp
MAHDVPGKHDGVHWHEPSGQSRAGFGQFKKQPTPYDAFMEAEGIPCFRSN
GIRTVLDLPLAPWKRTGGRGTYIQLYGTETKWGMY
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mRNA from alignment at P-wetherbeei_contig58623:3..257-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig58623.1.1 ID=mRNA_P-wetherbeei_contig58623.1.1|Name=mRNA_P-wetherbeei_contig58623.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=255bp|location=Sequence derived from alignment at P-wetherbeei_contig58623:3..257- (Phaeothamnion wetherbeei SAG_119_79)
ATGGCGCACGATGTTCCAGGCAAACACGACGGCGTGCATTGGCACGAGCC CTCCGGCCAGAGCCGCGCCGGCTTCGGGCAGTTCAAGAAGCAGCCGACCC CGTACGACGCCTTCATGGAGGCGGAAGGCATCCCCTGCTTCCGCAGCAAT GGCATTCGCACCGTCCTCGACCTGCCGCTCGCCCCGTGGAAGCGCACCGG CGGTCGCGGCACCTACATCCAGCTTTACGGCACCGAGACCAAGTGGGGCA TGTAC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig58623:3..257-

>mRNA_P-wetherbeei_contig58623.1.1 ID=mRNA_P-wetherbeei_contig58623.1.1|Name=mRNA_P-wetherbeei_contig58623.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=255bp|location=Sequence derived from alignment at P-wetherbeei_contig58623:3..257- (Phaeothamnion wetherbeei SAG_119_79)
ATGGCGCACGATGTTCCAGGCAAACACGACGGCGTGCATTGGCACGAGCC
CTCCGGCCAGAGCCGCGCCGGCTTCGGGCAGTTCAAGAAGCAGCCGACCC
CGTACGACGCCTTCATGGAGGCGGAAGGCATCCCCTGCTTCCGCAGCAAT
GGCATTCGCACCGTCCTCGACCTGCCGCTCGCCCCGTGGAAGCGCACCGG
CGGTCGCGGCACCTACATCCAGCTTTACGGCACCGAGACCAAGTGGGGCA
TGTAC
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