mRNA_P-wetherbeei_contig58605.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig58605.1.1
Unique NamemRNA_P-wetherbeei_contig58605.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig58605.1.1 vs. uniprot
Match: A0A7Y9YEC4_9ACTN (3-oxoadipate enol-lactonase n=1 Tax=Nocardioides marinus TaxID=374514 RepID=A0A7Y9YEC4_9ACTN)

HSP 1 Score: 304 bits (778), Expect = 1.430e-102
Identity = 153/167 (91.62%), Postives = 159/167 (95.21%), Query Frame = 1
Query:    1 MTVLDLPAISTVELTSNRASPLLVVGPSLGTSVGELWGEVAALLSDQFHIIGWDLPGHGTNRSVSEFPVSMESIAYGVVAAVDRFLEVNGLSHPRFAYAGDSAGGAVGLRLLLEHRDRISAAILTCTGARIGDTASWRERALLVTGQGIQVLVEGSLQRWFAPGFAQ 501
            MTVLDLPAISTVELTS+RASPLLVVGPSLGTSV ELWGEVAALL+D FH++GWDLPGHGTNRSVSE PVSMESIAYGVVA+VDRFLE+NGLSHPRFAYAGDS GGAVGL LLLEHR RISAAILTCTGARIGD ASWRERALLVTGQGIQVLVEGSLQRWFA GFAQ
Sbjct:    1 MTVLDLPAISTVELTSSRASPLLVVGPSLGTSVRELWGEVAALLTDHFHVLGWDLPGHGTNRSVSEHPVSMESIAYGVVASVDRFLEMNGLSHPRFAYAGDSVGGAVGLHLLLEHRSRISAAILTCTGARIGDRASWRERALLVTGQGIQVLVEGSLQRWFAQGFAQ 167          
BLAST of mRNA_P-wetherbeei_contig58605.1.1 vs. uniprot
Match: A0A849HMJ8_9MICO (Alpha/beta fold hydrolase n=2 Tax=Bacteria TaxID=2 RepID=A0A849HMJ8_9MICO)

HSP 1 Score: 279 bits (714), Expect = 7.740e-93
Identity = 139/167 (83.23%), Postives = 149/167 (89.22%), Query Frame = 1
Query:    1 MTVLDLPAISTVELTSNRASPLLVVGPSLGTSVGELWGEVAALLSDQFHIIGWDLPGHGTNRSVSEFPVSMESIAYGVVAAVDRFLEVNGLSHPRFAYAGDSAGGAVGLRLLLEHRDRISAAILTCTGARIGDTASWRERALLVTGQGIQVLVEGSLQRWFAPGFAQ 501
            MTVLD+P ISTVELTS+RASPLLVVGPSLGTSV ELWGEVAALL+DQFH++GW+LPGHGTNRSVSE  VSM SIA GVV AVDRFL VNGL+HPRFAYAGDS GGAVGL LLLEHR RIS AIL CTGAR+GDTASWRERA LV GQG +V+VEGSLQRWF PGF Q
Sbjct:    1 MTVLDVPVISTVELTSSRASPLLVVGPSLGTSVRELWGEVAALLTDQFHVLGWELPGHGTNRSVSEHAVSMASIAQGVVTAVDRFLAVNGLAHPRFAYAGDSVGGAVGLHLLLEHRPRISGAILACTGARLGDTASWRERAHLVAGQGTEVVVEGSLQRWFGPGFTQ 167          
BLAST of mRNA_P-wetherbeei_contig58605.1.1 vs. uniprot
Match: A1SEX1_NOCSJ (3-oxoadipate enol-lactonase n=1 Tax=Nocardioides sp. (strain ATCC BAA-499 / JS614) TaxID=196162 RepID=A1SEX1_NOCSJ)

HSP 1 Score: 179 bits (454), Expect = 3.600e-53
Identity = 89/157 (56.69%), Postives = 110/157 (70.06%), Query Frame = 1
Query:   25 ISTVELTSNRASPLLVVGPSLGTSVGELWGEVAALLSDQFHIIGWDLPGHGTNRSVSEFPVSMESIAYGVVAAVDRFLEVNGLSHPRFAYAGDSAGGAVGLRLLLEHRDRISAAILTCTGARIGDTASWRERALLVTGQGIQVLVEGSLQRWFAPGF 495
            ++T+ELT +R +PLLVVGPSLGTSV  LW   A LLS +FH++GWDLPGHG+N S+    +S+  +A  V AAV   L   G     F YAGDS GGAVGL+LLL+H D +S+A+L CTGARIG  A WRERA  V   G   ++ GSL+RWFAPGF
Sbjct:   10 VTTLELTVDRDAPLLVVGPSLGTSVESLWSPCARLLSGRFHVVGWDLPGHGSNPSIPATGLSIAELAAAVAAAVGELLVARGRPEGPFGYAGDSVGGAVGLQLLLDHPDLVSSAVLVCTGARIGTPAGWRERAENVRQGGTAAVLAGSLERWFAPGF 166          
BLAST of mRNA_P-wetherbeei_contig58605.1.1 vs. uniprot
Match: A0A4Z1CMP0_9ACTN (4-carboxymuconolactone decarboxylase n=1 Tax=Nocardioides eburneiflavus TaxID=2518372 RepID=A0A4Z1CMP0_9ACTN)

HSP 1 Score: 173 bits (439), Expect = 1.140e-49
Identity = 88/161 (54.66%), Postives = 108/161 (67.08%), Query Frame = 1
Query:   19 PAISTVELTSNRASPLLVVGPSLGTSVGELWGEVAALLSDQFHIIGWDLPGHGTNRSVSEFPVSMESIAYGVVAAVDRFLEVNGLSHPRFAYAGDSAGGAVGLRLLLEHRDRISAAILTCTGARIGDTASWRERALLVTGQGIQVLVEGSLQRWFAPGFAQ 501
            P ++ VEL  +   PLLV GPSLGTS   LW  VAALL D FH++ WDLPGHG NRSV     +M  +A GV+A VD  L   G +   F +AGDS GGAVGL+LLL+  +R+ AA + C+GAR+GD A WRERA LV   G  V+VEGS +RWF PGF +
Sbjct:    4 PHLAGVELAGSPDLPLLVCGPSLGTSATALWSPVAALLGDDFHVVAWDLPGHGVNRSVPTEDPTMTDLAAGVLAFVDGVLAARGEAGGSFVHAGDSVGGAVGLQLLLDAPERVRAAAVVCSGARLGDEAMWRERADLVRRSGTPVMVEGSARRWFRPGFIE 164          
BLAST of mRNA_P-wetherbeei_contig58605.1.1 vs. uniprot
Match: UPI001C218F8C (4-carboxymuconolactone decarboxylase n=1 Tax=Nocardia sp. ncl1 TaxID=2815722 RepID=UPI001C218F8C)

HSP 1 Score: 174 bits (440), Expect = 1.500e-49
Identity = 88/162 (54.32%), Postives = 106/162 (65.43%), Query Frame = 1
Query:   10 LDLPAISTVELTSNRASPLLVVGPSLGTSVGELWGEVAALLSDQFHIIGWDLPGHGTNRSVSEFPVSMESIAYGVVAAVDRFLEVNGLSHPRFAYAGDSAGGAVGLRLLLEHRDRISAAILTCTGARIGDTASWRERALLVTGQGIQVLVEGSLQRWFAPGF 495
            + +P ++ V+L+ + A PLLV GPSLGTS   LW   A LL D FH++GWDLPGHG+N +      +M  +A GV A VDR L   G     F YAGDS GGAVGL+LLL+H  RI  AIL CT ARIGD A WR+RA LV   G  V+ + S QRWFAPGF
Sbjct:    1 MTIPTVTGVQLSGSAALPLLVCGPSLGTSAVALWSATAELLGDHFHVVGWDLPGHGSNHAEVTGGFTMAELADGVQAFVDRVLAERGEPSGGFHYAGDSVGGAVGLQLLLDHPGRIVTAILACTAARIGDEAMWRDRATLVRSAGTSVMADDSAQRWFAPGF 162          
BLAST of mRNA_P-wetherbeei_contig58605.1.1 vs. uniprot
Match: A0A543A526_9ACTN (4-carboxymuconolactone decarboxylase /3-oxoadipate enol-lactonase n=1 Tax=Nocardioides albertanoniae TaxID=1175486 RepID=A0A543A526_9ACTN)

HSP 1 Score: 172 bits (436), Expect = 2.120e-49
Identity = 89/161 (55.28%), Postives = 109/161 (67.70%), Query Frame = 1
Query:   19 PAISTVELTSNRASPLLVVGPSLGTSVGELWGEVAALLSDQFHIIGWDLPGHGTNRSVSEFPVSMESIAYGVVAAVDRFLEVNGLSHPRFAYAGDSAGGAVGLRLLLEHRDRISAAILTCTGARIGDTASWRERALLVTGQGIQVLVEGSLQRWFAPGFAQ 501
            P I+ VEL  +R+ P+LVVGPSLGTSV  LW   AALL+D FH+IGW+LPGHG     +E   SM  +A GV+A+VD  L   G  H  FAYAGDS GGAVGL+LLL+   R+SAA+LT TGA+IG+   W +RA  V   G    + GS QRWFAPGF +
Sbjct:    3 PRITPVELAGDRSKPILVVGPSLGTSVTALWSAAAALLADSFHVIGWELPGHGHGAPATE-AFSMADLAAGVLASVDGVLTDRGERHGTFAYAGDSVGGAVGLQLLLDAPTRVSAAVLTNTGAKIGEPDGWNDRAETVRSAGTASQIAGSTQRWFAPGFLE 162          
BLAST of mRNA_P-wetherbeei_contig58605.1.1 vs. uniprot
Match: E9V0C2_9ACTN (Putative 3-oxoadipate enol-lactone hydrolase n=1 Tax=Nocardioidaceae bacterium Broad-1 TaxID=408672 RepID=E9V0C2_9ACTN)

HSP 1 Score: 168 bits (425), Expect = 3.650e-49
Identity = 86/161 (53.42%), Postives = 108/161 (67.08%), Query Frame = 1
Query:   19 PAISTVELTSNRASPLLVVGPSLGTSVGELWGEVAALLSDQFHIIGWDLPGHGTNRSVSEFPVSMESIAYGVVAAVDRFLEVNGLSHPRFAYAGDSAGGAVGLRLLLEHRDRISAAILTCTGARIGDTASWRERALLVTGQGIQVLVEGSLQRWFAPGFAQ 501
            P I+ VEL  + + P+LVVGPSLGTSV  LW   A LL+D+FH+IGW+LPGHG     ++   SM  +A GV+A VDR L   G  H  FAYAGDS GGAVGL+LLL+   R+SAA+LT TGA+IG+   W +RA  V   G    + GS QRWF+PGF +
Sbjct:    3 PRITPVELAGDPSKPVLVVGPSLGTSVTALWSATAELLADRFHVIGWELPGHGHGAPTTD-AFSMADLAAGVLACVDRVLTDRGERHGTFAYAGDSVGGAVGLQLLLDAPARVSAAVLTNTGAKIGEPDGWNDRATTVRSAGTASQIAGSTQRWFSPGFLE 162          
BLAST of mRNA_P-wetherbeei_contig58605.1.1 vs. uniprot
Match: A0A449GYD4_NOCFR (3-oxoadipate enol-lactonase 2 n=1 Tax=Nocardia farcinica TaxID=37329 RepID=A0A449GYD4_NOCFR)

HSP 1 Score: 171 bits (432), Expect = 1.200e-48
Identity = 88/162 (54.32%), Postives = 106/162 (65.43%), Query Frame = 1
Query:   10 LDLPAISTVELTSNRASPLLVVGPSLGTSVGELWGEVAALLSDQFHIIGWDLPGHGTNRSVSEFPVSMESIAYGVVAAVDRFLEVNGLSHPRFAYAGDSAGGAVGLRLLLEHRDRISAAILTCTGARIGDTASWRERALLVTGQGIQVLVEGSLQRWFAPGF 495
            + +PA++ + L  +   PLLV GPSLGTS   LW   AA L D FH++GWDLPGHG NR+      +M  +A GV   VDR L+  G    RF YAGDS GGAVGL+LLL+   RI AA+L CT ARIGD A WRERA LV   G   +V+GS +RWFAPGF
Sbjct:    1 MTVPAVTGIHLGGSPELPLLVCGPSLGTSAHGLWSATAARLGDLFHVVGWDLPGHGDNRAPVTGGFTMAELASGVADFVDRVLDERGEPGGRFHYAGDSVGGAVGLQLLLDRPGRIPAAVLACTAARIGDEAMWRERADLVRALGTGAVVDGSAKRWFAPGF 162          
BLAST of mRNA_P-wetherbeei_contig58605.1.1 vs. uniprot
Match: UPI0002D3EBE7 (4-carboxymuconolactone decarboxylase n=1 Tax=Nocardia higoensis TaxID=228599 RepID=UPI0002D3EBE7)

HSP 1 Score: 171 bits (434), Expect = 1.750e-48
Identity = 89/162 (54.94%), Postives = 105/162 (64.81%), Query Frame = 1
Query:   10 LDLPAISTVELTSNRASPLLVVGPSLGTSVGELWGEVAALLSDQFHIIGWDLPGHGTNRSVSEFPVSMESIAYGVVAAVDRFLEVNGLSHPRFAYAGDSAGGAVGLRLLLEHRDRISAAILTCTGARIGDTASWRERALLVTGQGIQVLVEGSLQRWFAPGF 495
            + +PAI+ V+L  +   PLLV GPSLGTS   LW   A LL + FH+IGWDLPGHG N +      +M  +A GV   VD  L   G     F YAGDS GG VG +LLL+H  RI+AA+L CT ARIGD A WRERA LV G G  V+VEGS +RWFAPGF
Sbjct:    1 MTIPAITGVQLGGSAELPLLVCGPSLGTSAVALWSAAAELLGEHFHVIGWDLPGHGHNTAEITGGFTMAELAEGVRVFVDGVLAERGTPGGSFVYAGDSVGGCVGQQLLLDHPARITAAVLACTAARIGDEAMWRERAELVRGAGTPVMVEGSAKRWFAPGF 162          
BLAST of mRNA_P-wetherbeei_contig58605.1.1 vs. uniprot
Match: UPI001CC70F90 (4-carboxymuconolactone decarboxylase n=1 Tax=Nocardioides sp. GBK3QG-3 TaxID=2874580 RepID=UPI001CC70F90)

HSP 1 Score: 168 bits (425), Expect = 1.210e-47
Identity = 89/164 (54.27%), Postives = 106/164 (64.63%), Query Frame = 1
Query:   19 PAISTVELTSNRAS---PLLVVGPSLGTSVGELWGEVAALLSDQFHIIGWDLPGHGTNRSVSEFPVSMESIAYGVVAAVDRFLEVNGLSHPRFAYAGDSAGGAVGLRLLLEHRDRISAAILTCTGARIGDTASWRERALLVTGQGIQVLVEGSLQRWFAPGFAQ 501
            PAI+ V +T +R     PLLVVGPSLGTS   LW + AA L+D F ++ WDLPGHG NRSV E P +M  +A GV+A VD  L   G     F YAGDS GGAVGL+LLL+  DR+ AA L CTGA+IG   SW ER   V   G  V+V GS +RWF PGF +
Sbjct:    3 PAITVVRMTGSRDRAELPLLVVGPSLGTSAATLWTDCAAGLTDAFDVVAWDLPGHGHNRSVPEEPFAMAELAAGVLAVVDDVLTQRGQPRGPFFYAGDSVGGAVGLQLLLDAPDRVVAAALLCTGAKIGTEESWTERIGSVRASGTPVMVAGSAERWFGPGFLE 166          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig58605.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7Y9YEC4_9ACTN1.430e-10291.623-oxoadipate enol-lactonase n=1 Tax=Nocardioides m... [more]
A0A849HMJ8_9MICO7.740e-9383.23Alpha/beta fold hydrolase n=2 Tax=Bacteria TaxID=2... [more]
A1SEX1_NOCSJ3.600e-5356.693-oxoadipate enol-lactonase n=1 Tax=Nocardioides s... [more]
A0A4Z1CMP0_9ACTN1.140e-4954.664-carboxymuconolactone decarboxylase n=1 Tax=Nocar... [more]
UPI001C218F8C1.500e-4954.324-carboxymuconolactone decarboxylase n=1 Tax=Nocar... [more]
A0A543A526_9ACTN2.120e-4955.284-carboxymuconolactone decarboxylase /3-oxoadipate... [more]
E9V0C2_9ACTN3.650e-4953.42Putative 3-oxoadipate enol-lactone hydrolase n=1 T... [more]
A0A449GYD4_NOCFR1.200e-4854.323-oxoadipate enol-lactonase 2 n=1 Tax=Nocardia far... [more]
UPI0002D3EBE71.750e-4854.944-carboxymuconolactone decarboxylase n=1 Tax=Nocar... [more]
UPI001CC70F901.210e-4754.274-carboxymuconolactone decarboxylase n=1 Tax=Nocar... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig58605contigP-wetherbeei_contig58605:4..504 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog196162.Noca_0833
Preferred namepcaD
PFAMsAbhydrolase_1,Abhydrolase_6,Hydrolase_4
Model size501
Max annot lvl201174|Actinobacteria
KEGG rclassRC00825,RC00938
KEGG koko:K01055,ko:K14727
KEGG ReactionR02991,R03470
KEGG Pathwayko00362,ko01100,ko01120,ko01220,map00362,map01100,map01120,map01220
KEGG ModuleM00568
Hectar predicted targeting categoryother localisation
Exons1
Evalue5.91e-54
EggNOG OGsCOG2267@1|root,COG2267@2|Bacteria,2I3KS@201174|Actinobacteria,4DWYR@85009|Propionibacteriales
EC3.1.1.24,4.1.1.44
DescriptionAlpha/beta hydrolase family
Cds size501
COG categoryI
BRITEko00000,ko00001,ko00002,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186867.5647087-CDS-P-wetherbeei_contig58605:3..5041683186867.5647087-CDS-P-wetherbeei_contig58605:3..504Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig58605 4..504 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig58605.1.1prot_P-wetherbeei_contig58605.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig58605 4..504 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig58605.1.1

>prot_P-wetherbeei_contig58605.1.1 ID=prot_P-wetherbeei_contig58605.1.1|Name=mRNA_P-wetherbeei_contig58605.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=167bp
MTVLDLPAISTVELTSNRASPLLVVGPSLGTSVGELWGEVAALLSDQFHI
IGWDLPGHGTNRSVSEFPVSMESIAYGVVAAVDRFLEVNGLSHPRFAYAG
DSAGGAVGLRLLLEHRDRISAAILTCTGARIGDTASWRERALLVTGQGIQ
VLVEGSLQRWFAPGFAQ
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mRNA from alignment at P-wetherbeei_contig58605:4..504+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig58605.1.1 ID=mRNA_P-wetherbeei_contig58605.1.1|Name=mRNA_P-wetherbeei_contig58605.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=501bp|location=Sequence derived from alignment at P-wetherbeei_contig58605:4..504+ (Phaeothamnion wetherbeei SAG_119_79)
ATGACCGTCCTTGACTTACCGGCGATCTCGACCGTCGAGCTGACCTCGAA CCGCGCGAGCCCACTCCTCGTCGTGGGTCCCTCGTTGGGAACGTCGGTGG GAGAGTTGTGGGGGGAGGTGGCCGCCCTCCTGAGTGACCAGTTCCATATC ATCGGCTGGGATCTTCCCGGACACGGCACGAACCGATCAGTCTCGGAGTT CCCCGTGTCGATGGAGTCCATCGCATACGGCGTGGTGGCTGCCGTCGACC GCTTCCTTGAGGTGAACGGCCTCAGTCACCCTCGGTTCGCCTACGCCGGC GACTCTGCCGGTGGCGCGGTGGGACTCCGCCTACTCCTGGAGCACCGGGA CCGAATCTCCGCTGCAATCCTGACCTGTACCGGTGCCCGGATCGGGGACA CGGCATCGTGGCGGGAACGCGCGCTTCTGGTCACCGGCCAGGGGATCCAG GTGCTGGTCGAAGGGTCACTGCAGCGCTGGTTCGCCCCGGGCTTCGCACA A
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Coding sequence (CDS) from alignment at P-wetherbeei_contig58605:4..504+

>mRNA_P-wetherbeei_contig58605.1.1 ID=mRNA_P-wetherbeei_contig58605.1.1|Name=mRNA_P-wetherbeei_contig58605.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=501bp|location=Sequence derived from alignment at P-wetherbeei_contig58605:4..504+ (Phaeothamnion wetherbeei SAG_119_79)
ATGACCGTCCTTGACTTACCGGCGATCTCGACCGTCGAGCTGACCTCGAA
CCGCGCGAGCCCACTCCTCGTCGTGGGTCCCTCGTTGGGAACGTCGGTGG
GAGAGTTGTGGGGGGAGGTGGCCGCCCTCCTGAGTGACCAGTTCCATATC
ATCGGCTGGGATCTTCCCGGACACGGCACGAACCGATCAGTCTCGGAGTT
CCCCGTGTCGATGGAGTCCATCGCATACGGCGTGGTGGCTGCCGTCGACC
GCTTCCTTGAGGTGAACGGCCTCAGTCACCCTCGGTTCGCCTACGCCGGC
GACTCTGCCGGTGGCGCGGTGGGACTCCGCCTACTCCTGGAGCACCGGGA
CCGAATCTCCGCTGCAATCCTGACCTGTACCGGTGCCCGGATCGGGGACA
CGGCATCGTGGCGGGAACGCGCGCTTCTGGTCACCGGCCAGGGGATCCAG
GTGCTGGTCGAAGGGTCACTGCAGCGCTGGTTCGCCCCGGGCTTCGCACA
A
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