mRNA_P-wetherbeei_contig58594.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig58594.1.1
Unique NamemRNA_P-wetherbeei_contig58594.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig58594.1.1 vs. uniprot
Match: UPI001BA8647F (prepilin-type N-terminal cleavage/methylation domain-containing protein n=4 Tax=Bradyrhizobium jicamae TaxID=280332 RepID=UPI001BA8647F)

HSP 1 Score: 57.0 bits (136), Expect = 7.940e-9
Identity = 29/39 (74.36%), Postives = 33/39 (84.62%), Query Frame = 1 
Query:   19 GTDERGFALAEMLCALAIFGRLAAIILPSIPRATSRARI 135
            G  E+GFAL E+LC LAI G LAAIILPSIPRAT+RAR+
Sbjct:   15 GRREKGFALIEILCVLAIIGMLAAIILPSIPRATTRARL 53
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BLAST of mRNA_P-wetherbeei_contig58594.1.1 vs. uniprot
Match: UPI001E4B86EC (type II secretion system GspH family protein n=1 Tax=Bradyrhizobium ivorense TaxID=2511166 RepID=UPI001E4B86EC)

HSP 1 Score: 53.5 bits (127), Expect = 2.140e-8
Identity = 28/36 (77.78%), Postives = 31/36 (86.11%), Query Frame = 1 
Query:   28 ERGFALAEMLCALAIFGRLAAIILPSIPRATSRARI 135
            E GFAL E+LC LAI G LAAIILPSIPRAT+RAR+
Sbjct:   14 EAGFALIEILCVLAITGMLAAIILPSIPRATTRARL 49
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BLAST of mRNA_P-wetherbeei_contig58594.1.1 vs. uniprot
Match: UPI001CE35B47 (prepilin-type N-terminal cleavage/methylation domain-containing protein n=4 Tax=Bradyrhizobium TaxID=374 RepID=UPI001CE35B47)

HSP 1 Score: 54.7 bits (130), Expect = 6.310e-8
Identity = 28/39 (71.79%), Postives = 32/39 (82.05%), Query Frame = 1 
Query:   19 GTDERGFALAEMLCALAIFGRLAAIILPSIPRATSRARI 135
            G  E GFAL E+LC LAI G LAAIILPS+PRAT+RAR+
Sbjct:   15 GRREAGFALIEILCVLAIIGLLAAIILPSLPRATTRARL 53
[Close]
BLAST of mRNA_P-wetherbeei_contig58594.1.1 vs. uniprot
Match: UPI00201C2D56 (prepilin-type N-terminal cleavage/methylation domain-containing protein n=1 Tax=Bradyrhizobium sp. SHOUNA76 TaxID=2908927 RepID=UPI00201C2D56)

HSP 1 Score: 52.0 bits (123), Expect = 7.960e-8
Identity = 25/37 (67.57%), Postives = 31/37 (83.78%), Query Frame = 1 
Query:   25 DERGFALAEMLCALAIFGRLAAIILPSIPRATSRARI 135
            + RGFAL E+LC LAI G LAAIILP++PR T+RAR+
Sbjct:   11 EARGFALIEILCVLAIIGLLAAIILPAVPRTTTRARL 47
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BLAST of mRNA_P-wetherbeei_contig58594.1.1 vs. uniprot
Match: A0A1M5URJ4_9BRAD (General secretion pathway protein H n=2 Tax=Bradyrhizobium erythrophlei TaxID=1437360 RepID=A0A1M5URJ4_9BRAD)

HSP 1 Score: 54.3 bits (129), Expect = 8.470e-8
Identity = 27/45 (60.00%), Postives = 36/45 (80.00%), Query Frame = 1 
Query:    1 PLNTAYGTDERGFALAEMLCALAIFGRLAAIILPSIPRATSRARI 135
            P+  A  + ERGFAL E++C LAI G LAAIILP++PRAT+RA++
Sbjct:    8 PVARAERSGERGFALIEIVCMLAIIGLLAAIILPALPRATTRAKL 52
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BLAST of mRNA_P-wetherbeei_contig58594.1.1 vs. uniprot
Match: A0A2U8PXY0_9BRAD (Prepilin-type N-terminal cleavage/methylation domain-containing protein n=33 Tax=Bradyrhizobiaceae TaxID=41294 RepID=A0A2U8PXY0_9BRAD)

HSP 1 Score: 54.3 bits (129), Expect = 8.600e-8
Identity = 27/37 (72.97%), Postives = 32/37 (86.49%), Query Frame = 1 
Query:   25 DERGFALAEMLCALAIFGRLAAIILPSIPRATSRARI 135
            D RGFAL E+LC LAI G LAAIILP+IPR+T+RAR+
Sbjct:   17 DARGFALIEILCVLAIIGLLAAIILPAIPRSTTRARL 53
[Close]
BLAST of mRNA_P-wetherbeei_contig58594.1.1 vs. uniprot
Match: A0A0D7NEW0_9BRAD (General secretion pathway protein GspH n=2 Tax=unclassified Bradyrhizobium TaxID=2631580 RepID=A0A0D7NEW0_9BRAD)

HSP 1 Score: 53.9 bits (128), Expect = 1.240e-7
Identity = 28/36 (77.78%), Postives = 31/36 (86.11%), Query Frame = 1 
Query:   28 ERGFALAEMLCALAIFGRLAAIILPSIPRATSRARI 135
            E GFAL E+LC LAI G LAAIILP+IPRATSRAR+
Sbjct:   18 EAGFALIEILCVLAIIGLLAAIILPAIPRATSRARL 53
[Close]
BLAST of mRNA_P-wetherbeei_contig58594.1.1 vs. uniprot
Match: A0A508TQP0_9BRAD (Uncharacterized protein n=4 Tax=Bradyrhizobium TaxID=374 RepID=A0A508TQP0_9BRAD)

HSP 1 Score: 53.5 bits (127), Expect = 1.750e-7
Identity = 28/36 (77.78%), Postives = 31/36 (86.11%), Query Frame = 1 
Query:   28 ERGFALAEMLCALAIFGRLAAIILPSIPRATSRARI 135
            E GFAL E+LC LAI G LAAIILPSIPRAT+RAR+
Sbjct:   18 EAGFALIEILCVLAITGMLAAIILPSIPRATTRARL 53
[Close]
BLAST of mRNA_P-wetherbeei_contig58594.1.1 vs. uniprot
Match: UPI00190C5E26 (Type II secretion system protein n=3 Tax=Bradyrhizobium TaxID=374 RepID=UPI00190C5E26)

HSP 1 Score: 53.5 bits (127), Expect = 1.820e-7
Identity = 26/44 (59.09%), Postives = 35/44 (79.55%), Query Frame = 1 
Query:    4 LNTAYGTDERGFALAEMLCALAIFGRLAAIILPSIPRATSRARI 135
            +  A G + +GFAL E+LC LAI G LAAIILP+IPR+T+RA++
Sbjct:   15 IRNAQGFNAQGFALIEILCVLAIIGLLAAIILPAIPRSTTRAKL 58
[Close]
BLAST of mRNA_P-wetherbeei_contig58594.1.1 vs. uniprot
Match: UPI001BAC0A9E (prepilin-type N-terminal cleavage/methylation domain-containing protein n=2 Tax=Bradyrhizobium lablabi TaxID=722472 RepID=UPI001BAC0A9E)

HSP 1 Score: 52.8 bits (125), Expect = 3.240e-7
Identity = 27/41 (65.85%), Postives = 32/41 (78.05%), Query Frame = 1 
Query:   13 AYGTDERGFALAEMLCALAIFGRLAAIILPSIPRATSRARI 135
            A    + GFAL E+LC LAI G LAAIILPS+PRAT+RAR+
Sbjct:   12 AEANAQAGFALIEILCVLAIIGLLAAIILPSVPRATTRARL 52
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig58594.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 21
Match NameE-valueIdentityDescription
UPI001BA8647F7.940e-974.36prepilin-type N-terminal cleavage/methylation doma... [more]
UPI001E4B86EC2.140e-877.78type II secretion system GspH family protein n=1 T... [more]
UPI001CE35B476.310e-871.79prepilin-type N-terminal cleavage/methylation doma... [more]
UPI00201C2D567.960e-867.57prepilin-type N-terminal cleavage/methylation doma... [more]
A0A1M5URJ4_9BRAD8.470e-860.00General secretion pathway protein H n=2 Tax=Bradyr... [more]
A0A2U8PXY0_9BRAD8.600e-872.97Prepilin-type N-terminal cleavage/methylation doma... [more]
A0A0D7NEW0_9BRAD1.240e-777.78General secretion pathway protein GspH n=2 Tax=unc... [more]
A0A508TQP0_9BRAD1.750e-777.78Uncharacterized protein n=4 Tax=Bradyrhizobium Tax... [more]
UPI00190C5E261.820e-759.09Type II secretion system protein n=3 Tax=Bradyrhiz... [more]
UPI001BAC0A9E3.240e-765.85prepilin-type N-terminal cleavage/methylation doma... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig58594contigP-wetherbeei_contig58594:3..137 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog1038862.KB893833_gene4685
PFAMsN_methyl
Model size135
Max annot lvl28211|Alphaproteobacteria
KEGG koko:K02457
KEGG TC3.A.15
KEGG Pathwayko03070,ko05111,map03070,map05111
KEGG ModuleM00331
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Evalue1.29e-08
EggNOG OGsCOG4970@1|root,COG4970@2|Bacteria,1RBW1@1224|Proteobacteria,2U6X0@28211|Alphaproteobacteria,3JY0W@41294|Bradyrhizobiaceae
DescriptionFunction proposed based on presence of conserved amino acid motif, structural feature or limited homology
Cds size135
COG categoryNU
BRITEko00000,ko00001,ko00002,ko02044
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186867.3781998-CDS-P-wetherbeei_contig58594:2..1371683186867.3781998-CDS-P-wetherbeei_contig58594:2..137Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig58594 3..137 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig58594.1.1prot_P-wetherbeei_contig58594.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig58594 3..137 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig58594.1.1

>prot_P-wetherbeei_contig58594.1.1 ID=prot_P-wetherbeei_contig58594.1.1|Name=mRNA_P-wetherbeei_contig58594.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=45bp
PLNTAYGTDERGFALAEMLCALAIFGRLAAIILPSIPRATSRARI
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mRNA from alignment at P-wetherbeei_contig58594:3..137+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig58594.1.1 ID=mRNA_P-wetherbeei_contig58594.1.1|Name=mRNA_P-wetherbeei_contig58594.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=135bp|location=Sequence derived from alignment at P-wetherbeei_contig58594:3..137+ (Phaeothamnion wetherbeei SAG_119_79)
CCGCTGAACACGGCATACGGCACAGACGAACGGGGCTTCGCGCTGGCCGA
AATGCTTTGCGCGCTTGCGATCTTCGGCCGTTTGGCCGCGATCATCCTGC
CGTCGATTCCGCGAGCAACCTCCCGTGCGAGGATC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig58594:3..137+

>mRNA_P-wetherbeei_contig58594.1.1 ID=mRNA_P-wetherbeei_contig58594.1.1|Name=mRNA_P-wetherbeei_contig58594.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=135bp|location=Sequence derived from alignment at P-wetherbeei_contig58594:3..137+ (Phaeothamnion wetherbeei SAG_119_79)
CCGCTGAACACGGCATACGGCACAGACGAACGGGGCTTCGCGCTGGCCGA
AATGCTTTGCGCGCTTGCGATCTTCGGCCGTTTGGCCGCGATCATCCTGC
CGTCGATTCCGCGAGCAACCTCCCGTGCGAGGATC
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