mRNA_P-wetherbeei_contig5859.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig5859.1.1
Unique NamemRNA_P-wetherbeei_contig5859.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig5859.1.1 vs. uniprot
Match: D8LLC1_ECTSI (MEKK and related serine/threonine protein kinases amardillo repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLC1_ECTSI)

HSP 1 Score: 346 bits (887), Expect = 7.340e-101
Identity = 284/679 (41.83%), Postives = 354/679 (52.14%), Query Frame = 1
Query:    1 LTQFNPIQVLEGLKYLHEQGVLHRDIKGANILTTKNGLVKLADFGVAMKLSDRGGSSAADDADVVGTPYWMAPEIIEMTGITTACDVWSVGCTIIELLSGGKPPYYDLPQMTALYKIVQDDHPPLPDGLTVALRDFLLQCFQKEPQMRNSAAQLLSHPWLKNPRSHLRRVGDDEMAKAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGP---INWDRDLSVGGATPAVLALDGTENTGAAEANSSGARRNVNTISPNSEEAMQQLRAMRGSGAVAAAGPAP---PVLDPDALDEWGDEDDVVPMGLPQTGGHCGGYSSVSGSGTLGDR-----------LLMGASSSGGSV--GGIVGREAGVLLRFAEDEETFDD------IELPKDGGGGGLSFFRLAAPAPSALADRLKQKMARQQARVGSAAPMDPFGKELETEVDSEERASGGAXXXXXXXXXXXXXXXXXXXXSAKRFERDSHARIGGDVSEELSRLQ---AAAMADTASLGGGAGVSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLLDQQVAESCAKVRAMLDGCPEARFYVVSADHGVVPLLQLAEARG----LGPAALAQVMSVINRIVDGNPKALEHLALVGMIPRIL 1941
            LT     QVLEGLKYLH+QGVLHRDIKGANILTTK GLVKLADFGVAMKLSD+     A D DVVGTPYWMAPEIIEMTG TTACDVWSVGCTIIELL G KPPY+DLPQMTALYKIVQDDHPPLPDG + ALRDFLLQCF+K+ QMR S+ +LL HPWLKNP +HLR+ G     + XXXXXXXXXXXXXXXX                   XXXXXXXXXXX       G     +WDR+L     + AV +L  T + G  +  ++ A      ++P SEEA  +LRA++ +   A   P       LD +ALD+W D+                                         L+ G          GG++G EA VL RF EDEE  +D      I++P DG     +        P++ AD LK KM   Q   GSAAP      +  T+  S   A                        + K  ER+ HA++G +V  ELSRL+   + A  ++ +L  G G                                        X                 ++++V  +C  V   L+GCP+AR YV+SAD GV PL+ L +A       G  A+A V++VIN+IV+ N KALE LA+VG++P+++
Sbjct:  147 LTAIYMTQVLEGLKYLHDQGVLHRDIKGANILTTKRGLVKLADFGVAMKLSDK----QAFDVDVVGTPYWMAPEIIEMTGTTTACDVWSVGCTIIELLEG-KPPYFDLPQMTALYKIVQDDHPPLPDGTSQALRDFLLQCFKKQAQMRKSSVELLRHPWLKNPTNHLRKGGAAAGQQGXXXXXXXXXXXXXXXXPKASPLSSGAGGARRGNIPXXXXXXXXXXXRRGAAEDGQGWDQDWDRELGFVAPSLAVGSLPATGSGGQQQPAAAAAAETG--MAPASEEAKHRLRALKEAEEQARNQPLALKKMSLDANALDDWADDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLVRGGXXXXXXXXXGGVIGMEATVLRRFMEDEEEEEDAFGDIDIDVPGDGPLLPTAMGEGERSRPASFADNLKAKMLSHQG--GSAAPASGV-SQAATDEASGSAAGAFDDFDDLFGTGFEDLSDGEEGSNGKEAEREMHAKVGQEVFAELSRLETRGSVAGNNSGNLRSGDGQQKGRGGGGTAAVSGNATGGVSTGRLLGTVTEVEEIDEEEXVT---------------MEEEVVRTCVSVCERLEGCPQARHYVMSADRGVTPLMYLMQAMKPEDRQGEEAMANVLAVINKIVEDNLKALESLAVVGLVPKVM 800          
BLAST of mRNA_P-wetherbeei_contig5859.1.1 vs. uniprot
Match: A0A7S1GCW8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1GCW8_9STRA)

HSP 1 Score: 220 bits (560), Expect = 1.720e-61
Identity = 104/153 (67.97%), Postives = 129/153 (84.31%), Query Frame = 1
Query:   22 QVLEGLKYLHEQGVLHRDIKGANILTTKNGLVKLADFGVAMKLSDRGGSSAADDADVVGTPYWMAPEIIEMTGITTACDVWSVGCTIIELLSGGKPPYYDLPQMTALYKIVQDDHPPLPDGLTVALRDFLLQCFQKEPQMRNSAAQLLSHPWL 480
            QVLEGL YLH+QGV+HRDIKGANILTTK+GLVKLADFGVA+  +++  S       VVGTPYWMAPEIIEM G ++ACD+WSVGCT++ELL+G KPPY+DL  MTAL++IVQDD+PPLPDG++ ALR+FL++CF+KEP  R  A+ LL HPW+
Sbjct:  162 QVLEGLAYLHDQGVVHRDIKGANILTTKDGLVKLADFGVAISDTEKSNS-------VVGTPYWMAPEIIEMAGPSSACDIWSVGCTVVELLTG-KPPYFDLRPMTALFRIVQDDYPPLPDGISPALREFLVECFRKEPSFRKDASALLQHPWI 306          
BLAST of mRNA_P-wetherbeei_contig5859.1.1 vs. uniprot
Match: A0A397GKS7_9GLOM (Protein kinase domain-containing protein n=1 Tax=Diversispora epigaea TaxID=1348612 RepID=A0A397GKS7_9GLOM)

HSP 1 Score: 216 bits (551), Expect = 1.000e-60
Identity = 102/159 (64.15%), Postives = 127/159 (79.87%), Query Frame = 1
Query:   22 QVLEGLKYLHEQGVLHRDIKGANILTTKNGLVKLADFGVAMKLSDRGGSSAADDADVVGTPYWMAPEIIEMTGITTACDVWSVGCTIIELLSGGKPPYYDLPQMTALYKIVQDDHPPLPDGLTVALRDFLLQCFQKEPQMRNSAAQLLSHPWLKNPRSH 498
            QVLEGL YLH+QGV+HRDIKGANIL TK  LVKLADFGVA K+++      + ++DVVGTPYWMAPEI+E+TG TT+ D+WSVGCT+IELL GGKPPY+ +P MTALY IV DD PPLP+  +  ++DFL+QCFQK+  +R SA +LL HPW+ N R +
Sbjct:  119 QVLEGLLYLHDQGVIHRDIKGANILLTKKNLVKLADFGVATKINN------SVESDVVGTPYWMAPEIVELTGATTSSDIWSVGCTVIELLEGGKPPYHGMPDMTALYHIVNDDCPPLPESASPIVKDFLMQCFQKDCNLRVSARKLLKHPWVSNVRKN 271          
BLAST of mRNA_P-wetherbeei_contig5859.1.1 vs. uniprot
Match: UPI001C351385 (Uncharacterized protein n=1 Tax=Carya illinoinensis TaxID=32201 RepID=UPI001C351385)

HSP 1 Score: 210 bits (535), Expect = 3.700e-59
Identity = 107/168 (63.69%), Postives = 128/168 (76.19%), Query Frame = 1
Query:   22 QVLEGLKYLHEQGVLHRDIKGANILTTKNGLVKLADFGVAMKLSDRGGSSAADDADVVGTPYWMAPEIIEMTGITTACDVWSVGCTIIELLSGGKPPYYDLPQMTALYKIVQDDHPPLPDGLTVALRDFLLQCFQKEPQMRNSAAQLLSHPWLKNPR----SHLRRVG 513
            QVLEGL YLHEQGV+HRDIKGANILTTK GLVKLADFGVA KL++    +  +   VVGTPYWMAPE+IEM+G+  A D+WSVGCT+IELL+   PPYYDL  M AL++IVQDDHPP+PD L+  + DFL QCF+K+ + R  A  LLSHPW++N R    S LR  G
Sbjct:  127 QVLEGLVYLHEQGVIHRDIKGANILTTKEGLVKLADFGVATKLTE----ADVNTHSVVGTPYWMAPEVIEMSGVCAASDIWSVGCTVIELLTC-VPPYYDLQPMPALFRIVQDDHPPIPDSLSPDITDFLRQCFKKDARQRPDAKTLLSHPWIQNCRRALQSPLRHTG 289          
BLAST of mRNA_P-wetherbeei_contig5859.1.1 vs. uniprot
Match: A6R7M3_AJECN (Protein kinase domain-containing protein n=1 Tax=Ajellomyces capsulatus (strain NAm1 / WU24) TaxID=2059318 RepID=A6R7M3_AJECN)

HSP 1 Score: 214 bits (544), Expect = 4.260e-59
Identity = 102/157 (64.97%), Postives = 124/157 (78.98%), Query Frame = 1
Query:   22 QVLEGLKYLHEQGVLHRDIKGANILTTKNGLVKLADFGVAMKLSDRGGSSAADDADVVGTPYWMAPEIIEMTGITTACDVWSVGCTIIELLSGGKPPYYDLPQMTALYKIVQDDHPPLPDGLTVALRDFLLQCFQKEPQMRNSAAQLLSHPWLKNPR 492
            QVL GL YLHEQGV+HRDIKGANILTTK GLVKLADFGVA +      ++   ++ VVGTPYWMAPE+IE++G TTA D+WS+GCT+IELL G KPPYY    M AL++IV DDHPPLP G + A+RDFL+QCFQK+P +R +A +LL HPW+ N R
Sbjct:  176 QVLHGLLYLHEQGVIHRDIKGANILTTKQGLVKLADFGVASR------TTGLHESSVVGTPYWMAPEVIELSGATTASDIWSLGCTVIELLEG-KPPYYKFQPMQALFRIVNDDHPPLPQGASPAVRDFLMQCFQKDPNLRVAARKLLKHPWIVNAR 325          
BLAST of mRNA_P-wetherbeei_contig5859.1.1 vs. uniprot
Match: A0A7S3HPM4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HPM4_9STRA)

HSP 1 Score: 224 bits (572), Expect = 8.650e-59
Identity = 109/176 (61.93%), Postives = 138/176 (78.41%), Query Frame = 1
Query:   22 QVLEGLKYLHEQGVLHRDIKGANILTTKNGLVKLADFGVAMKLSDRGGSSAA-----DDADVVGTPYWMAPEIIEMTGITTACDVWSVGCTIIELLSGGKPPYYDLPQMTALYKIVQDDHPPLPDGLTVALRDFLLQCFQKEPQMRNSAAQLLSHPWLKNPRSHLRRVGDDEMAKA 534
            QVL GLKYLH+QGVLHRDIKGANILT+K+GLVKLADFGVA+K++  G +S       D+ D+ G+PYWMAPEIIEM+  T+ACD+WSVGC +IELL+  KPPY+D+  M+AL++IV DD+PP P+G++ AL+DFLLQCF KEP MR+SA +LL HPWL N  S    V   +M K+
Sbjct:  144 QVLRGLKYLHDQGVLHRDIKGANILTSKDGLVKLADFGVAIKINSDGANSGPSGGMEDNPDLAGSPYWMAPEIIEMSTPTSACDIWSVGCVVIELLTS-KPPYFDMDPMSALFRIVSDDYPPFPEGISQALKDFLLQCFHKEPSMRSSAEKLLGHPWLGNSSSKQSLVQTSQMLKS 318          
BLAST of mRNA_P-wetherbeei_contig5859.1.1 vs. uniprot
Match: A0A2G9GH18_9LAMI (MEKK n=4 Tax=Pentapetalae TaxID=1437201 RepID=A0A2G9GH18_9LAMI)

HSP 1 Score: 211 bits (536), Expect = 9.780e-59
Identity = 104/160 (65.00%), Postives = 126/160 (78.75%), Query Frame = 1
Query:   22 QVLEGLKYLHEQGVLHRDIKGANILTTKNGLVKLADFGVAMKLSDRGGSSAADDADVVGTPYWMAPEIIEMTGITTACDVWSVGCTIIELLSGGKPPYYDLPQMTALYKIVQDDHPPLPDGLTVALRDFLLQCFQKEPQMRNSAAQLLSHPWLKNPRSHL 501
            QVLEGL YLHEQGV+HRDIKGANILTTK GLVKLADFGVA KL++    +  +   VVGTPYWMAPE+IEM+G+  A D+WSVGCT+IELL+   PPYYDL  M AL++IVQD+HPP+PD L+ A+ DFL QCF+K+ + R  A  LLSHPW++N R  L
Sbjct:  127 QVLEGLVYLHEQGVIHRDIKGANILTTKEGLVKLADFGVATKLTE----ADVNTHSVVGTPYWMAPEVIEMSGVCAASDIWSVGCTVIELLTC-VPPYYDLQPMPALFRIVQDEHPPIPDTLSPAITDFLRQCFKKDARQRPDAKTLLSHPWIQNSRRAL 281          
BLAST of mRNA_P-wetherbeei_contig5859.1.1 vs. uniprot
Match: B8NA24_ASPFN (Serine-threonine kinase SepH n=1 Tax=Aspergillus flavus (strain ATCC 200026 / FGSC A1120 / IAM 13836 / NRRL 3357 / JCM 12722 / SRRC 167) TaxID=332952 RepID=B8NA24_ASPFN)

HSP 1 Score: 217 bits (552), Expect = 1.110e-58
Identity = 103/157 (65.61%), Postives = 127/157 (80.89%), Query Frame = 1
Query:   22 QVLEGLKYLHEQGVLHRDIKGANILTTKNGLVKLADFGVAMKLSDRGGSSAADDADVVGTPYWMAPEIIEMTGITTACDVWSVGCTIIELLSGGKPPYYDLPQMTALYKIVQDDHPPLPDGLTVALRDFLLQCFQKEPQMRNSAAQLLSHPWLKNPR 492
            QVL GL YLHEQGV+HRDIKGANILTTK GLVKLADFGVA +      ++  +++ VVGTPYWMAPE+IE++G TTA D+WS+GCT+IELL G KPPYY+L  M AL++IV DDHPPLP G + A++DFL+QCFQK+P +R SA +LL HPW+ N R
Sbjct:  182 QVLHGLLYLHEQGVIHRDIKGANILTTKQGLVKLADFGVASR------TTGLNESSVVGTPYWMAPEVIELSGATTASDIWSLGCTVIELLEG-KPPYYNLQPMPALFRIVNDDHPPLPQGASPAVKDFLMQCFQKDPNLRVSAKKLLKHPWIVNAR 331          
BLAST of mRNA_P-wetherbeei_contig5859.1.1 vs. uniprot
Match: A0A835S4S5_VANPL (Protein kinase domain-containing protein n=1 Tax=Vanilla planifolia TaxID=51239 RepID=A0A835S4S5_VANPL)

HSP 1 Score: 211 bits (536), Expect = 2.090e-58
Identity = 106/168 (63.10%), Postives = 129/168 (76.79%), Query Frame = 1
Query:   22 QVLEGLKYLHEQGVLHRDIKGANILTTKNGLVKLADFGVAMKLSDRGGSSAADDADVVGTPYWMAPEIIEMTGITTACDVWSVGCTIIELLSGGKPPYYDLPQMTALYKIVQDDHPPLPDGLTVALRDFLLQCFQKEPQMRNSAAQLLSHPWLKNPR----SHLRRVG 513
            QVLEGL YLHEQGV+HRDIKGANILTTK GLVKLADFGVA KL++    +  +   VVGTPYWMAPE+IEM+G+  A D+WSVGCT+IELL+   PPYYDL  M AL++IVQD HPP+P+GL+V + DFL QCF+K+   R  A  LL HPW++N R    S LR++G
Sbjct:  127 QVLEGLVYLHEQGVIHRDIKGANILTTKEGLVKLADFGVATKLNE----ADLNTHSVVGTPYWMAPEVIEMSGVCAASDIWSVGCTVIELLTC-VPPYYDLQPMPALFRIVQDAHPPIPEGLSVDITDFLRQCFKKDAMQRPDARTLLQHPWIQNSRRVLPSSLRQIG 289          
BLAST of mRNA_P-wetherbeei_contig5859.1.1 vs. uniprot
Match: A0A0U5FWB4_ASPCI (Putative Cell division control protein 15, cdc15 n=1 Tax=Aspergillus calidoustus TaxID=454130 RepID=A0A0U5FWB4_ASPCI)

HSP 1 Score: 215 bits (548), Expect = 2.750e-58
Identity = 102/157 (64.97%), Postives = 126/157 (80.25%), Query Frame = 1
Query:   22 QVLEGLKYLHEQGVLHRDIKGANILTTKNGLVKLADFGVAMKLSDRGGSSAADDADVVGTPYWMAPEIIEMTGITTACDVWSVGCTIIELLSGGKPPYYDLPQMTALYKIVQDDHPPLPDGLTVALRDFLLQCFQKEPQMRNSAAQLLSHPWLKNPR 492
            QVL GL YLH+QGV+HRDIKGANILTTK GLVKLADFGVA +      ++   ++ VVGTPYWMAPE+IE++G TTA D+WS+GCT+IELL G KPPYY+L  M AL++IV DDHPPLP G + A++DFL+QCFQK+P +R SA +LL HPW+ N R
Sbjct:  165 QVLHGLLYLHDQGVIHRDIKGANILTTKEGLVKLADFGVASR------TTGLSESSVVGTPYWMAPEVIELSGATTASDIWSLGCTVIELLEG-KPPYYNLQPMPALFRIVNDDHPPLPQGASPAVKDFLMQCFQKDPNLRVSARKLLKHPWIVNAR 314          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig5859.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LLC1_ECTSI7.340e-10141.83MEKK and related serine/threonine protein kinases ... [more]
A0A7S1GCW8_9STRA1.720e-6167.97Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]
A0A397GKS7_9GLOM1.000e-6064.15Protein kinase domain-containing protein n=1 Tax=D... [more]
UPI001C3513853.700e-5963.69Uncharacterized protein n=1 Tax=Carya illinoinensi... [more]
A6R7M3_AJECN4.260e-5964.97Protein kinase domain-containing protein n=1 Tax=A... [more]
A0A7S3HPM4_9STRA8.650e-5961.93Hypothetical protein (Fragment) n=1 Tax=Spumella e... [more]
A0A2G9GH18_9LAMI9.780e-5965.00MEKK n=4 Tax=Pentapetalae TaxID=1437201 RepID=A0A2... [more]
B8NA24_ASPFN1.110e-5865.61Serine-threonine kinase SepH n=1 Tax=Aspergillus f... [more]
A0A835S4S5_VANPL2.090e-5863.10Protein kinase domain-containing protein n=1 Tax=V... [more]
A0A0U5FWB4_ASPCI2.750e-5864.97Putative Cell division control protein 15, cdc15 n... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig5859contigP-wetherbeei_contig5859:226..3403 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D8LLC1
Preferred nameCDC15
PFAMsPkinase
Model size1941
Max annot lvl2759|Eukaryota
KEGG koko:K06683
KEGG Pathwayko04111,ko04113,ko04392,map04111,map04113,map04392
Hectar predicted targeting categoryother localisation
Exons5
Evalue1.2e-101
EggNOG OGsKOG0198@1|root,KOG0198@2759|Eukaryota
EC2.7.11.1
DescriptionMAP kinase kinase kinase activity
Cds size1941
COG categoryS
BRITEko00000,ko00001,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186867.2699144-CDS-P-wetherbeei_contig5859:225..12891683186867.2699144-CDS-P-wetherbeei_contig5859:225..1289Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5859 226..1289 -
1683186867.2803643-CDS-P-wetherbeei_contig5859:1379..15531683186867.2803643-CDS-P-wetherbeei_contig5859:1379..1553Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5859 1380..1553 -
1683186867.2917473-CDS-P-wetherbeei_contig5859:2099..24451683186867.2917473-CDS-P-wetherbeei_contig5859:2099..2445Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5859 2100..2445 -
1683186867.3010595-CDS-P-wetherbeei_contig5859:2745..29101683186867.3010595-CDS-P-wetherbeei_contig5859:2745..2910Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5859 2746..2910 -
1683186867.3104095-CDS-P-wetherbeei_contig5859:3211..34031683186867.3104095-CDS-P-wetherbeei_contig5859:3211..3403Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5859 3212..3403 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig5859.1.1prot_P-wetherbeei_contig5859.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig5859 226..3403 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig5859.1.1

>prot_P-wetherbeei_contig5859.1.1 ID=prot_P-wetherbeei_contig5859.1.1|Name=mRNA_P-wetherbeei_contig5859.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=647bp
LTQFNPIQVLEGLKYLHEQGVLHRDIKGANILTTKNGLVKLADFGVAMKL
SDRGGSSAADDADVVGTPYWMAPEIIEMTGITTACDVWSVGCTIIELLSG
GKPPYYDLPQMTALYKIVQDDHPPLPDGLTVALRDFLLQCFQKEPQMRNS
AAQLLSHPWLKNPRSHLRRVGDDEMAKAAAAVPAIVAAAAATAAAAAGAG
AAGGDGGAGGVAAAAAARGGVRSGGGRAGGGGPINWDRDLSVGGATPAVL
ALDGTENTGAAEANSSGARRNVNTISPNSEEAMQQLRAMRGSGAVAAAGP
APPVLDPDALDEWGDEDDVVPMGLPQTGGHCGGYSSVSGSGTLGDRLLMG
ASSSGGSVGGIVGREAGVLLRFAEDEETFDDIELPKDGGGGGLSFFRLAA
PAPSALADRLKQKMARQQARVGSAAPMDPFGKELETEVDSEERASGGAGG
GGIAGIGGISGIGGGGGGSAKRFERDSHARIGGDVSEELSRLQAAAMADT
ASLGGGAGVSASSGGGDGDSEASSSGGSGGTTSEPALATRAAAAAVAGGD
SSCDDRAIAAATAAVLLDQQVAESCAKVRAMLDGCPEARFYVVSADHGVV
PLLQLAEARGLGPAALAQVMSVINRIVDGNPKALEHLALVGMIPRIL
back to top

mRNA from alignment at P-wetherbeei_contig5859:226..3403-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig5859.1.1 ID=mRNA_P-wetherbeei_contig5859.1.1|Name=mRNA_P-wetherbeei_contig5859.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=3178bp|location=Sequence derived from alignment at P-wetherbeei_contig5859:226..3403- (Phaeothamnion wetherbeei SAG_119_79)
TTAACCCAATTTAATCCAATCCAGGTGCTGGAGGGGCTGAAATACCTGCA CGAGCAGGGCGTGCTGCACCGCGACATCAAGGGTGCCAACATCCTCACCA CCAAGAACGGCCTCGTCAAGCTCGCCGACTTTGGCGTCGCCATGAAGCTC TCCGACCGCGGAGGATCGTCTGCCGCCGACGATGCCGACGTGGTGCGTCT GTTCTCGTCGTTGCTTTGCTTTGATTGATTTAATGCTGATGTAATGGATT GACTAATTCCTGGTATTCTGGTGTTTCTCCCGTCTCGTCCTGTCTCTTGC ACGAGTGTATTTTCCTCTTTTGCCGTTCTCTTGCCTTTTTGGTGGGGTGA CGGACGGCCAAAGAAAGAGAAGGCGGCAAGTTTGGCGCCCTAGCCCGCTC TTTTGCCGCCTTTGCAGCACCAGCAACCAACCCGCTTTGACACAACTAAT CGAAACAAAGCCCATACGTAACCGAAGCCATGTAACCAAGCAGGTGGGAA CGCCGTACTGGATGGCGCCGGAGATAATCGAGATGACGGGCATCACGACG GCGTGCGACGTATGGTCGGTGGGCTGCACCATAATCGAGCTGCTGTCGGG CGGAAAGCCGCCCTACTATGACCTGCCCCAGATGACCGCCCTCTACAAGA TCGTACAGGTACGGCTTTAGATCCGCCAGTCGGCCAAAAGCCGATTAGAA ATCGGTTGGATTCAACTCGATTTGGTCTGCGGACAGACGTCTGCAGCTGG CACGAGCCGAAGAACCACGCGCGTGACCGGTGTTCCTTCTTTGTGTCCAC TTTCATCTTCGGACGTTCGAATATACGTCGGCGCACAAGAACTAACAAAT ATTTCTGTTTTGAGTGGACGAGTTCTCTCAATTCTGATTGCGAAAACAGA GCCGCTTTCCTTGCAATTTCCGACAAACGAAATCGCTATTGCCCCACCAT GCCTGCAGGACGACCACCCGCCGCTGCCGGACGGGCTGACGGTGGCGCTG CGCGACTTTCTACTGCAGTGCTTCCAGAAGGAGCCGCAGATGCGCAATTC GGCAGCGCAGCTCCTCTCCCACCCGTGGCTCAAGAACCCGCGCAGCCACC TCCGTCGCGTCGGCGACGACGAGATGGCCAAGGCCGCCGCCGCCGTGCCC GCCATCGTCGCCGCCGCCGCTGCCACGGCTGCCGCGGCTGCCGGGGCTGG TGCTGCGGGCGGCGATGGCGGTGCTGGAGGCGTTGCTGCTGCTGCGGCGG CGCGTGGCGGCGTTAGATCAGGTGGCGGGCGGGCAGGCGGCGGTGGCCCT ATTAGTGGCGGGATTGACGGAGGAGCAGGAGCTGCAGCGTCCCCTAGGGA CGGAAGCAGCAACGGTAGCGTCGGCGGGGCGGCCGCCGCTGCGGCGACGG CGGCGGCGGTTACCGCGGCCGCCGGACGGCAGAGCGTGCTAAAAACCGTC AAGACGTACGCCCAGCTGATGCAGGAGCAGTCGCCGCAGCGGCGCTACGA CCTCTCAGCGAGGGATCTAGCCGACCTCAACGAAATTGCCGACCAGATCT GCGAGGAGGCGGACGAGGCGGCCGCCGCCGCGGAGGCGGCCGCGGCGGCG GCAGCGACCGCGGCAGCCACAGCCGTGGTGGCGGCTGCGTCGCAGCGATC GGGGGCGTTGGCGGTCGGCGGGGAAAATGGGTTGCCGCCGCGGCCGTCGG GGGAGGCGCGGACGCCCGAATACGCGGTGCGAAGATCCGGCGACGGAACG GGCGGAAGCAGCAGCGGCGGGGTGGTGGCGCGGTCTCCAGGCGCGCACGC CAAGGCGGCAGCACTGTCGCAGTTGGAGATGGACGGCGACGACGCCGAAG ACTGGGACAGGGACCTAAGCGTCGGAGGGGCGACGCCGGCGGTCCTGGCC CTCGACGGCACCGAAAACACCGGCGCGGCTGAGGCAAACAGCAGCGGCGC GCGGCGCAACGTCAACACCATCAGCCCGAACTCTGAAGAGGCCATGCAGC AGTTGCGGGCGATGCGTGGCAGCGGTTCCGCCCCCGGCGTCCTCGGCTCC CTCGGCGGTAGCGTACGCGGTGGCTTTGGCTCGCGGCGGCCGTCGCCACA CGATCTCCCGGCAGGTGCGGTAGCGGCGGCGGGTCCAGCACCGCCGGTTC TAGATCCAGATGCGCTGGACGAATGGGGCGACGAAGACGACGTCGTGCCG ATGGGCTTGCCGCAGACGGGTGGCCACTGTGGTGGTTACAGCAGCGTGAG CGGCAGTGGCACCCTCGGGGACCGACTGCTGATGGGGGCGAGCAGCAGCG GCGGCAGCGTCGGCGGCATCGTAGGGCGTGAGGCCGGCGTGCTGTTGCGC TTTGCGGAGGACGAGGAGACGTTTGACGACATCGAATTGCCCAAGGACGG CGGCGGCGGCGGGCTGAGCTTCTTTCGGCTGGCGGCGCCAGCGCCGTCAG CGCTGGCCGACCGTCTCAAGCAGAAGATGGCGCGGCAGCAGGCGCGCGTT GGCTCGGCGGCCCCCATGGATCCCTTTGGAAAGGAGCTCGAGACCGAAGT CGACTCAGAGGAGCGGGCCAGCGGCGGCGCCGGCGGCGGTGGCATTGCCG GCATCGGCGGTATCAGCGGCATTGGCGGCGGCGGTGGCGGCAGTGCCAAG CGGTTCGAGCGCGACTCGCACGCGCGCATCGGCGGCGACGTCTCGGAGGA GCTTTCGCGCCTTCAGGCCGCCGCGATGGCAGACACGGCGTCGCTCGGCG GTGGCGCTGGCGTCAGTGCCAGCAGCGGCGGCGGCGACGGCGACAGCGAG GCTTCCAGCAGCGGTGGATCTGGCGGCACCACCAGCGAGCCTGCACTTGC AACAAGAGCAGCGGCGGCGGCGGTGGCGGGCGGCGATAGCAGCTGCGACG ACAGAGCGATCGCGGCGGCTACCGCGGCCGTGCTGCTGGACCAGCAGGTG GCGGAGAGCTGCGCCAAGGTGCGGGCAATGCTCGACGGCTGTCCCGAGGC GCGCTTCTACGTCGTGTCCGCCGACCACGGCGTCGTGCCGCTCCTGCAGC TCGCCGAGGCGCGAGGCCTGGGGCCTGCCGCGCTGGCGCAAGTCATGTCC GTCATCAACCGCATTGTCGACGGCAACCCCAAGGCGCTCGAGCACCTTGC GCTGGTTGGGATGATCCCGCGGATCCTC
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig5859:226..3403-

>mRNA_P-wetherbeei_contig5859.1.1 ID=mRNA_P-wetherbeei_contig5859.1.1|Name=mRNA_P-wetherbeei_contig5859.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1941bp|location=Sequence derived from alignment at P-wetherbeei_contig5859:226..3403- (Phaeothamnion wetherbeei SAG_119_79)
TTAACCCAATTTAATCCAATCCAGGTGCTGGAGGGGCTGAAATACCTGCA
CGAGCAGGGCGTGCTGCACCGCGACATCAAGGGTGCCAACATCCTCACCA
CCAAGAACGGCCTCGTCAAGCTCGCCGACTTTGGCGTCGCCATGAAGCTC
TCCGACCGCGGAGGATCGTCTGCCGCCGACGATGCCGACGTGGTGGGAAC
GCCGTACTGGATGGCGCCGGAGATAATCGAGATGACGGGCATCACGACGG
CGTGCGACGTATGGTCGGTGGGCTGCACCATAATCGAGCTGCTGTCGGGC
GGAAAGCCGCCCTACTATGACCTGCCCCAGATGACCGCCCTCTACAAGAT
CGTACAGGACGACCACCCGCCGCTGCCGGACGGGCTGACGGTGGCGCTGC
GCGACTTTCTACTGCAGTGCTTCCAGAAGGAGCCGCAGATGCGCAATTCG
GCAGCGCAGCTCCTCTCCCACCCGTGGCTCAAGAACCCGCGCAGCCACCT
CCGTCGCGTCGGCGACGACGAGATGGCCAAGGCCGCCGCCGCCGTGCCCG
CCATCGTCGCCGCCGCCGCTGCCACGGCTGCCGCGGCTGCCGGGGCTGGT
GCTGCGGGCGGCGATGGCGGTGCTGGAGGCGTTGCTGCTGCTGCGGCGGC
GCGTGGCGGCGTTAGATCAGGTGGCGGGCGGGCAGGCGGCGGTGGCCCTA
TTAACTGGGACAGGGACCTAAGCGTCGGAGGGGCGACGCCGGCGGTCCTG
GCCCTCGACGGCACCGAAAACACCGGCGCGGCTGAGGCAAACAGCAGCGG
CGCGCGGCGCAACGTCAACACCATCAGCCCGAACTCTGAAGAGGCCATGC
AGCAGTTGCGGGCGATGCGTGGCAGCGGTGCGGTAGCGGCGGCGGGTCCA
GCACCGCCGGTTCTAGATCCAGATGCGCTGGACGAATGGGGCGACGAAGA
CGACGTCGTGCCGATGGGCTTGCCGCAGACGGGTGGCCACTGTGGTGGTT
ACAGCAGCGTGAGCGGCAGTGGCACCCTCGGGGACCGACTGCTGATGGGG
GCGAGCAGCAGCGGCGGCAGCGTCGGCGGCATCGTAGGGCGTGAGGCCGG
CGTGCTGTTGCGCTTTGCGGAGGACGAGGAGACGTTTGACGACATCGAAT
TGCCCAAGGACGGCGGCGGCGGCGGGCTGAGCTTCTTTCGGCTGGCGGCG
CCAGCGCCGTCAGCGCTGGCCGACCGTCTCAAGCAGAAGATGGCGCGGCA
GCAGGCGCGCGTTGGCTCGGCGGCCCCCATGGATCCCTTTGGAAAGGAGC
TCGAGACCGAAGTCGACTCAGAGGAGCGGGCCAGCGGCGGCGCCGGCGGC
GGTGGCATTGCCGGCATCGGCGGTATCAGCGGCATTGGCGGCGGCGGTGG
CGGCAGTGCCAAGCGGTTCGAGCGCGACTCGCACGCGCGCATCGGCGGCG
ACGTCTCGGAGGAGCTTTCGCGCCTTCAGGCCGCCGCGATGGCAGACACG
GCGTCGCTCGGCGGTGGCGCTGGCGTCAGTGCCAGCAGCGGCGGCGGCGA
CGGCGACAGCGAGGCTTCCAGCAGCGGTGGATCTGGCGGCACCACCAGCG
AGCCTGCACTTGCAACAAGAGCAGCGGCGGCGGCGGTGGCGGGCGGCGAT
AGCAGCTGCGACGACAGAGCGATCGCGGCGGCTACCGCGGCCGTGCTGCT
GGACCAGCAGGTGGCGGAGAGCTGCGCCAAGGTGCGGGCAATGCTCGACG
GCTGTCCCGAGGCGCGCTTCTACGTCGTGTCCGCCGACCACGGCGTCGTG
CCGCTCCTGCAGCTCGCCGAGGCGCGAGGCCTGGGGCCTGCCGCGCTGGC
GCAAGTCATGTCCGTCATCAACCGCATTGTCGACGGCAACCCCAAGGCGC
TCGAGCACCTTGCGCTGGTTGGGATGATCCCGCGGATCCTC
back to top