mRNA_P-wetherbeei_contig58586.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig58586.1.1
Unique NamemRNA_P-wetherbeei_contig58586.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig58586.1.1 vs. uniprot
Match: UPI001B2B1C06 (sigma-70 family RNA polymerase sigma factor n=1 Tax=Brevibacillus reuszeri TaxID=54915 RepID=UPI001B2B1C06)

HSP 1 Score: 55.1 bits (131), Expect = 9.070e-8
Identity = 25/54 (46.30%), Postives = 40/54 (74.07%), Query Frame = 1
Query:    1 QEALASLSDEGRAVILLHYWGGYSCKEIGEMLERGESAVKVQLFRARERLRQWY 162
            Q+AL SL++E R +I LHY+ G++ +E+ E+L+  E  +K +L +ARERL +WY
Sbjct:  113 QQALESLNEELRLLIQLHYFEGFTVREMAELLQVAEGTLKSRLVKARERLAKWY 166          
BLAST of mRNA_P-wetherbeei_contig58586.1.1 vs. uniprot
Match: A0A3N5Q1V1_9BACT (RNA polymerase sigma factor n=1 Tax=Ignavibacteriae bacterium TaxID=2026749 RepID=A0A3N5Q1V1_9BACT)

HSP 1 Score: 55.1 bits (131), Expect = 1.020e-7
Identity = 29/50 (58.00%), Postives = 36/50 (72.00%), Query Frame = 1
Query:    1 QEALASLSDEGRAVILLHYWGGYSCKEIGEMLERGESAVKVQLFRARERL 150
            Q+A+ SLS+E R VILL Y+G  S K+I E     ES VK++LFRARERL
Sbjct:  128 QQAILSLSEEFRTVILLRYFGDMSVKDIAESENISESLVKIRLFRARERL 177          
BLAST of mRNA_P-wetherbeei_contig58586.1.1 vs. uniprot
Match: A0A3A9A854_9BACT (RNA polymerase sigma factor n=1 Tax=bacterium 1xD42-87 TaxID=2320113 RepID=A0A3A9A854_9BACT)

HSP 1 Score: 52.0 bits (123), Expect = 7.100e-7
Identity = 28/50 (56.00%), Postives = 36/50 (72.00%), Query Frame = 1
Query:    4 EALASLSDEGRAVILLHYWGGYSCKEIGEMLERGESAVKVQLFRARERLR 153
            + L +L  + + V+LLHY+ GYS KEIGE+L   ESAVK +L RARE LR
Sbjct:   83 QELYALPAKWKTVLLLHYFEGYSVKEIGEILGLSESAVKKRLQRAREALR 132          
BLAST of mRNA_P-wetherbeei_contig58586.1.1 vs. uniprot
Match: A0A537WEP6_9ACTN (Sigma-70 family RNA polymerase sigma factor (Fragment) n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A537WEP6_9ACTN)

HSP 1 Score: 51.2 bits (121), Expect = 1.070e-6
Identity = 26/49 (53.06%), Postives = 34/49 (69.39%), Query Frame = 1
Query:    7 ALASLSDEGRAVILLHYWGGYSCKEIGEMLERGESAVKVQLFRARERLR 153
            AL  L+   RA I+LHY+GGYS +E+  ++    +AV V LFRARERLR
Sbjct:   66 ALHHLTPHQRASIVLHYYGGYSLREVATIIGSTRAAVGVHLFRARERLR 114          
BLAST of mRNA_P-wetherbeei_contig58586.1.1 vs. uniprot
Match: UPI0019212D61 (sigma-70 family RNA polymerase sigma factor n=1 Tax=unclassified Enterococcus TaxID=2608891 RepID=UPI0019212D61)

HSP 1 Score: 51.2 bits (121), Expect = 2.190e-6
Identity = 27/50 (54.00%), Postives = 35/50 (70.00%), Query Frame = 1
Query:    4 EALASLSDEGRAVILLHYWGGYSCKEIGEMLERGESAVKVQLFRARERLR 153
            EA  SL ++ R VI L Y+ GYS +EI ++LE  ESAVK +L RAR+ LR
Sbjct:  108 EACLSLGEDQRTVIHLFYFEGYSVREISQLLELSESAVKTRLSRARDALR 157          
BLAST of mRNA_P-wetherbeei_contig58586.1.1 vs. uniprot
Match: A0A7Y1TWN2_9GAMM (RNA polymerase sigma factor n=1 Tax=Woeseiaceae bacterium TaxID=2026806 RepID=A0A7Y1TWN2_9GAMM)

HSP 1 Score: 49.3 bits (116), Expect = 2.410e-6
Identity = 25/51 (49.02%), Postives = 35/51 (68.63%), Query Frame = 1
Query:    1 QEALASLSDEGRAVILLHYWGGYSCKEIGEMLERGESAVKVQLFRARERLR 153
            Q AL +LSDE RAVI+LHY+ G   ++I + L+  E  VK +LF AR +L+
Sbjct:   17 QSALLALSDEHRAVIVLHYFSGCDYRQISDTLDIPEKTVKSRLFSARRQLK 67          
BLAST of mRNA_P-wetherbeei_contig58586.1.1 vs. uniprot
Match: G6ADK7_9BACT (RNA polymerase sigma factor n=3 Tax=Prevotella TaxID=838 RepID=G6ADK7_9BACT)

HSP 1 Score: 50.8 bits (120), Expect = 2.830e-6
Identity = 26/49 (53.06%), Postives = 32/49 (65.31%), Query Frame = 1
Query:    7 ALASLSDEGRAVILLHYWGGYSCKEIGEMLERGESAVKVQLFRARERLR 153
            ALA+LS+  R  ILLHY  GY  KEI E+ E  E A+K QL R R+ L+
Sbjct:  107 ALATLSETMRTSILLHYMQGYQIKEIAEITENSEDAIKKQLSRGRQELK 155          
BLAST of mRNA_P-wetherbeei_contig58586.1.1 vs. uniprot
Match: A0A1C6HI04_9FIRM (RNA polymerase sigma factor CnrH n=3 Tax=Eubacteriales TaxID=186802 RepID=A0A1C6HI04_9FIRM)

HSP 1 Score: 50.8 bits (120), Expect = 3.400e-6
Identity = 26/54 (48.15%), Postives = 39/54 (72.22%), Query Frame = 1
Query:    1 QEALASLSDEGRAVILLHYWGGYSCKEIGEMLERGESAVKVQLFRARERLRQWY 162
            +E L SL ++ R V+LL+Y  G+S KEI ++LE  ESA+K +L R RE+++Q Y
Sbjct:  111 KEMLQSLDEKYRIVLLLYYGEGFSIKEIAQILELTESAIKSRLSRGREQVKQEY 164          
BLAST of mRNA_P-wetherbeei_contig58586.1.1 vs. uniprot
Match: UPI001BD476E7 (RNA polymerase sigma factor n=3 Tax=Flagellimonas TaxID=444459 RepID=UPI001BD476E7)

HSP 1 Score: 51.2 bits (121), Expect = 3.480e-6
Identity = 27/54 (50.00%), Postives = 40/54 (74.07%), Query Frame = 1
Query:    1 QEALASLSDEGRAVILLHYWGGYSCKEIGEMLERGESAVKVQLFRARERLRQWY 162
            +EAL  +S E ++++LL Y  G S KE+ E++E GESAVK++L RA+ERL + Y
Sbjct:  152 REALELVSAEEKSILLLKYQDGASIKELVELMELGESAVKMRLKRAKERLVETY 205          
BLAST of mRNA_P-wetherbeei_contig58586.1.1 vs. uniprot
Match: A0A538AWR3_9ACTN (RNA polymerase sigma factor n=3 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A538AWR3_9ACTN)

HSP 1 Score: 50.8 bits (120), Expect = 3.940e-6
Identity = 26/50 (52.00%), Postives = 36/50 (72.00%), Query Frame = 1
Query:    1 QEALASLSDEGRAVILLHYWGGYSCKEIGEMLERGESAVKVQLFRARERL 150
            + ALA+L D  RAV++L    G++C EIG+ +   E AVKV+LFRAR+RL
Sbjct:  118 ERALATLPDSQRAVVVLKDVYGWTCDEIGKQMGTTEGAVKVRLFRARQRL 167          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig58586.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI001B2B1C069.070e-846.30sigma-70 family RNA polymerase sigma factor n=1 Ta... [more]
A0A3N5Q1V1_9BACT1.020e-758.00RNA polymerase sigma factor n=1 Tax=Ignavibacteria... [more]
A0A3A9A854_9BACT7.100e-756.00RNA polymerase sigma factor n=1 Tax=bacterium 1xD4... [more]
A0A537WEP6_9ACTN1.070e-653.06Sigma-70 family RNA polymerase sigma factor (Fragm... [more]
UPI0019212D612.190e-654.00sigma-70 family RNA polymerase sigma factor n=1 Ta... [more]
A0A7Y1TWN2_9GAMM2.410e-649.02RNA polymerase sigma factor n=1 Tax=Woeseiaceae ba... [more]
G6ADK7_9BACT2.830e-653.06RNA polymerase sigma factor n=3 Tax=Prevotella Tax... [more]
A0A1C6HI04_9FIRM3.400e-648.15RNA polymerase sigma factor CnrH n=3 Tax=Eubacteri... [more]
UPI001BD476E73.480e-650.00RNA polymerase sigma factor n=3 Tax=Flagellimonas ... [more]
A0A538AWR3_9ACTN3.940e-652.00RNA polymerase sigma factor n=3 Tax=Actinomycetia ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig58586contigP-wetherbeei_contig58586:1..171 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog1203606.HMPREF1526_02933
PFAMsSigma70_r2,Sigma70_r4_2
Model size171
Max annot lvl186801|Clostridia
KEGG koko:K03088
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Evalue3.31e-07
EggNOG OGsCOG1595@1|root,COG1595@2|Bacteria,1V9ZH@1239|Firmicutes,24NF2@186801|Clostridia,36KPM@31979|Clostridiaceae
DescriptionBelongs to the sigma-70 factor family. ECF subfamily
Cds size171
COG categoryK
BRITEko00000,ko03021
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186867.2291584-CDS-P-wetherbeei_contig58586:0..1711683186867.2291584-CDS-P-wetherbeei_contig58586:0..171Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig58586 1..171 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig58586.1.1prot_P-wetherbeei_contig58586.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig58586 1..171 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig58586.1.1

>prot_P-wetherbeei_contig58586.1.1 ID=prot_P-wetherbeei_contig58586.1.1|Name=mRNA_P-wetherbeei_contig58586.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=57bp
QEALASLSDEGRAVILLHYWGGYSCKEIGEMLERGESAVKVQLFRARERL
RQWYQK*
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mRNA from alignment at P-wetherbeei_contig58586:1..171+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig58586.1.1 ID=mRNA_P-wetherbeei_contig58586.1.1|Name=mRNA_P-wetherbeei_contig58586.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=171bp|location=Sequence derived from alignment at P-wetherbeei_contig58586:1..171+ (Phaeothamnion wetherbeei SAG_119_79)
CAGGAGGCGCTGGCAAGCTTGAGCGACGAAGGGCGGGCCGTGATTTTGCT CCACTACTGGGGCGGCTATAGCTGCAAGGAGATCGGAGAAATGCTGGAAC GCGGGGAGTCAGCCGTCAAGGTCCAACTGTTTCGCGCTCGGGAGAGGCTC CGCCAATGGTACCAGAAATGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig58586:1..171+

>mRNA_P-wetherbeei_contig58586.1.1 ID=mRNA_P-wetherbeei_contig58586.1.1|Name=mRNA_P-wetherbeei_contig58586.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=171bp|location=Sequence derived from alignment at P-wetherbeei_contig58586:1..171+ (Phaeothamnion wetherbeei SAG_119_79)
CAGGAGGCGCTGGCAAGCTTGAGCGACGAAGGGCGGGCCGTGATTTTGCT
CCACTACTGGGGCGGCTATAGCTGCAAGGAGATCGGAGAAATGCTGGAAC
GCGGGGAGTCAGCCGTCAAGGTCCAACTGTTTCGCGCTCGGGAGAGGCTC
CGCCAATGGTACCAGAAATGA
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