mRNA_P-wetherbeei_contig58563.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79
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Overview
Homology
BLAST of mRNA_P-wetherbeei_contig58563.1.1 vs. uniprot
Match: UPI001B8A7D4E (TetR/AcrR family transcriptional regulator n=1 Tax=Bradyrhizobium diazoefficiens TaxID=1355477 RepID=UPI001B8A7D4E) HSP 1 Score: 196 bits (497), Expect = 8.270e-62 Identity = 98/99 (98.99%), Postives = 98/99 (98.99%), Query Frame = 1
Query: 1 AVISSPEGREMRTLTNKRRLEAMLDFLAPLVPELSKRDRHSMASGIVSVSSVLSWMFMRDNCGYDGKRAGEAAAYAVQLIIEGGQQRCSALRAQRPGGA 297
AVISSPEGREMRTLTNKRRLEAMLDFLAPLVPELSKRDRHSMASGIVSVSSVLSWMFMRDNCGYDGKRAGEAAAYAVQLIIEGGQQRCSALRAQRP GA
Sbjct: 114 AVISSPEGREMRTLTNKRRLEAMLDFLAPLVPELSKRDRHSMASGIVSVSSVLSWMFMRDNCGYDGKRAGEAAAYAVQLIIEGGQQRCSALRAQRPSGA 212
BLAST of mRNA_P-wetherbeei_contig58563.1.1 vs. uniprot
Match: UPI00200C9D20 (TetR/AcrR family transcriptional regulator n=2 Tax=unclassified Frankia TaxID=2632575 RepID=UPI00200C9D20) HSP 1 Score: 55.5 bits (132), Expect = 4.110e-7 Identity = 28/91 (30.77%), Postives = 49/91 (53.85%), Query Frame = 1
Query: 4 VISSPEGREMRTLTNKRRLEAMLDFLAPLVPELSKRDRHSMASGIVSVSSVLSWMFMRDNCGYDGKRAGEAAAYAVQLIIEGGQQRCSALR 276
++ +PEG R N RR +A VP L + +A+ + ++++ +W +RD DG AGE AA A++LI++G + R +A +
Sbjct: 104 LLLAPEGLLARLSDNDRRRRTARTVVAQEVPGLDETSARRVAAALQALTAAATWQTLRDYWDLDGAEAGETAALALELILDGARARVAAQK 194
BLAST of mRNA_P-wetherbeei_contig58563.1.1 vs. uniprot
Match: A0A1S1QFC2_9ACTN (HTH tetR-type domain-containing protein n=2 Tax=Frankiaceae TaxID=74712 RepID=A0A1S1QFC2_9ACTN) HSP 1 Score: 53.1 bits (126), Expect = 2.350e-6 Identity = 32/91 (35.16%), Postives = 52/91 (57.14%), Query Frame = 1
Query: 4 VISSPEGREMRTLTNKRR---LEAMLDFLAPLVPELSKRDRHSMASGIVSVSSVLSWMFMRDNCGYDGKRAGEAAAYAVQLIIEGGQQRCS 267
++ +PEG R N RR A++D AP + E+S R +AS + +++ +W +RD DG AGEAAA A++L++EG + R +
Sbjct: 87 LLMAPEGLPARLSDNDRRRATARAVVDREAPGLDEVSAR---RVASIVQVLTAAATWQTLRDYWDLDGAEAGEAAALALELLLEGARARAA 174
BLAST of mRNA_P-wetherbeei_contig58563.1.1 vs. uniprot
Match: UPI001931F505 (TetR/AcrR family transcriptional regulator n=1 Tax=unclassified Frankia TaxID=2632575 RepID=UPI001931F505) HSP 1 Score: 53.1 bits (126), Expect = 3.170e-6 Identity = 28/89 (31.46%), Postives = 46/89 (51.69%), Query Frame = 1
Query: 4 VISSPEGREMRTLTNKRRLEAMLDFLAPLVPELSKRDRHSMASGIVSVSSVLSWMFMRDNCGYDGKRAGEAAAYAVQLIIEGGQQRCSA 270
++ +PEG R N RR A + P L + +A+ + +++ +W +RD DG AGEAAA A+QL+++G + R A
Sbjct: 117 LLRAPEGLFARLSDNDRRRRAARGVVDREAPGLDEASARRVAAVVQVLTAAATWQTLRDYWDVDGVEAGEAAALAIQLLLDGARARAQA 205
BLAST of mRNA_P-wetherbeei_contig58563.1.1 vs. uniprot
Match: UPI001FF4F090 (hypothetical protein n=2 Tax=Rhizobium TaxID=379 RepID=UPI001FF4F090) HSP 1 Score: 50.8 bits (120), Expect = 5.150e-6 Identity = 28/81 (34.57%), Postives = 44/81 (54.32%), Query Frame = 1
Query: 1 AVISSPEGREMRTLTNKRRLEAMLDFLAPLVPELSKRDRHSMASGIVSVSSVLSWMFMRDNCGYDGKRAGEAAAYAVQLII 243
A + S GR+MR T R E+ LAP + L D + + + S +W ++D G DG +AGEAA++A++LI+
Sbjct: 3 AALHSRTGRQMRMATVPARRESFSAALAPALLSLPTSDARKVEALAHLLYSASAWEVLKDYGGLDGTQAGEAASWALELIL 83
BLAST of mRNA_P-wetherbeei_contig58563.1.1 vs. uniprot
Match: UPI001B27D004 (TetR/AcrR family transcriptional regulator n=1 Tax=Shinella sp. TaxID=1870904 RepID=UPI001B27D004) HSP 1 Score: 51.2 bits (121), Expect = 1.630e-5 Identity = 24/83 (28.92%), Postives = 45/83 (54.22%), Query Frame = 1
Query: 10 SSPEGREMRTLTNKRRLEAMLDFLAPLVPELSKRDRHSMASGIVSVSSVLSWMFMRDNCGYDGKRAGEAAAYAVQLIIEGGQQ 258
+S GR+MR N R A L+ + +S + + + + S +W M+D G G++AGEAAA+A++++++ +Q
Sbjct: 109 ASGAGRQMRLQANAERQAAFRRSLSAVTTSMSPERARQLEASVQLLFSATAWQTMKDYWGLTGEQAGEAAAWAIRVLLDAARQ 191
BLAST of mRNA_P-wetherbeei_contig58563.1.1 vs. uniprot
Match: A0A1X0T6K6_9HYPH (TetR family transcriptional regulator n=6 Tax=Hyphomicrobiales TaxID=356 RepID=A0A1X0T6K6_9HYPH) HSP 1 Score: 50.4 bits (119), Expect = 2.130e-5 Identity = 32/86 (37.21%), Postives = 51/86 (59.30%), Query Frame = 1
Query: 1 AVISSPEGREMR--TLTNKRRLEAMLDF---LAPLVPELSKRDRHSMASGIVSVSSVLSWMFMRDNCGYDGKRAGEAAAYAVQLII 243
A + S GREMR T+ ++RR DF LAP + +LS +R + + + S +W ++D G DG +AGEAA++A++LI+
Sbjct: 69 AALHSRTGREMRAGTIADRRR-----DFSVALAPALDKLSHVERQKIEALAHLLYSASAWEVLKDYGGLDGTQAGEAASWALELIL 149
BLAST of mRNA_P-wetherbeei_contig58563.1.1 vs. uniprot
Match: A0A1F3BPC9_9DELT (HTH tetR-type domain-containing protein n=1 Tax=Anaeromyxobacter sp. RBG_16_69_14 TaxID=1797238 RepID=A0A1F3BPC9_9DELT) HSP 1 Score: 50.8 bits (120), Expect = 2.270e-5 Identity = 31/100 (31.00%), Postives = 50/100 (50.00%), Query Frame = 1
Query: 4 VISSPEGREMRTLTNKRRLEAMLDFLAPLVPELSKRDRHSMASGIVSVSSVLSWMFMRDNCGYDGKRAGEAAAYAVQLIIEGGQQRCSALRA--QRPGGA 297
++ +P GR R R A + P L + +A+ + +++ +W +RD DG A EAAA A++L++EG + R +A RA RPG A
Sbjct: 104 LLVAPGGRLARLSDKAERQRAFTGVVKHEAPGLGRHAERHVAAALQLLTAAATWQALRDYWDMDGMEAAEAAALAIELLLEGARAR-TARRAPRSRPGAA 202
BLAST of mRNA_P-wetherbeei_contig58563.1.1 vs. uniprot
Match: A0A504U5T6_9HYPH (TetR/AcrR family transcriptional regulator n=1 Tax=Rhizobium glycinendophyticum TaxID=2589807 RepID=A0A504U5T6_9HYPH) HSP 1 Score: 49.7 bits (117), Expect = 6.220e-5 Identity = 28/79 (35.44%), Postives = 44/79 (55.70%), Query Frame = 1
Query: 7 ISSPEGREMRTLTNKRRLEAMLDFLAPLVPELSKRDRHSMASGIVSVSSVLSWMFMRDNCGYDGKRAGEAAAYAVQLII 243
I S GR MR T R LAP + +LS+ +R + + + S +W ++D G DG +AGEAA++A++LI+
Sbjct: 112 IHSSTGRAMRAGTIADRRRDFSAALAPALDKLSEAERRKVEALAHLLYSASAWEVLKDYGGLDGTQAGEAASWALELIL 190 The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig58563.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 9
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-wetherbeei_contig58563.1.1 >prot_P-wetherbeei_contig58563.1.1 ID=prot_P-wetherbeei_contig58563.1.1|Name=mRNA_P-wetherbeei_contig58563.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=90bp MRTLTNKRRLEAMLDFLAPLVPELSKRDRHSMASGIVSVSSVLSWMFMRDback to top mRNA from alignment at P-wetherbeei_contig58563:3..302+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-wetherbeei_contig58563.1.1 ID=mRNA_P-wetherbeei_contig58563.1.1|Name=mRNA_P-wetherbeei_contig58563.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=300bp|location=Sequence derived from alignment at P-wetherbeei_contig58563:3..302+ (Phaeothamnion wetherbeei SAG_119_79)back to top Coding sequence (CDS) from alignment at P-wetherbeei_contig58563:3..302+ >mRNA_P-wetherbeei_contig58563.1.1 ID=mRNA_P-wetherbeei_contig58563.1.1|Name=mRNA_P-wetherbeei_contig58563.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=270bp|location=Sequence derived from alignment at P-wetherbeei_contig58563:3..302+ (Phaeothamnion wetherbeei SAG_119_79)back to top |