mRNA_P-wetherbeei_contig58546.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig58546.1.1
Unique NamemRNA_P-wetherbeei_contig58546.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig58546.1.1 vs. uniprot
Match: A0A495RUV2_SPHMI (Outer membrane receptor protein involved in Fe transport n=2 Tax=Sphingosinicella microcystinivorans TaxID=335406 RepID=A0A495RUV2_SPHMI)

HSP 1 Score: 322 bits (826), Expect = 2.750e-102
Identity = 160/164 (97.56%), Postives = 164/164 (100.00%), Query Frame = 1
Query:    1 ALVAGPGYANITDSGTTEIERSTTRVDTRQFSAFAEFSYDVSERFRVFAGARYVNERVRSTLVESFVIGIFSPIFTDPDDIFAPIYFPVPNDVEALTAPGGPGVSFDFKLNTFLPRAGFEYDMTDDAMLYGTIARGVRNGGLNSPFSAMGFGPVGSPEFEDALT 492
            ALVAGPGYANIT+SGTTEIERSTTRV+TRQFSAFAEFSYDVSERFRVFAGARYVNERVRSTLVESFVIGIF+PIFTDPDDIFAPIYFPVPNDVEALTAPGGPGVSFDFKLNTFLPRAGFEYD+TDDAMLYGTIARGVRNGGLNSPFSAMGFGPVGSPEFEDALT
Sbjct:  530 ALVAGPGYANITESGTTEIERSTTRVNTRQFSAFAEFSYDVSERFRVFAGARYVNERVRSTLVESFVIGIFAPIFTDPDDIFAPIYFPVPNDVEALTAPGGPGVSFDFKLNTFLPRAGFEYDVTDDAMLYGTIARGVRNGGLNSPFSAMGFGPVGSPEFEDALT 693          
BLAST of mRNA_P-wetherbeei_contig58546.1.1 vs. uniprot
Match: A0A1G3KWF4_9SPHN (Uncharacterized protein n=1 Tax=Sphingopyxis sp. RIFCSPHIGHO2_12_FULL_65_19 TaxID=1802172 RepID=A0A1G3KWF4_9SPHN)

HSP 1 Score: 290 bits (742), Expect = 4.420e-91
Identity = 140/164 (85.37%), Postives = 151/164 (92.07%), Query Frame = 1
Query:    1 ALVAGPGYANITDSGTTEIERSTTRVDTRQFSAFAEFSYDVSERFRVFAGARYVNERVRSTLVESFVIGIFSPIFTDPDDIFAPIYFPVPNDVEALTAPGGPGVSFDFKLNTFLPRAGFEYDMTDDAMLYGTIARGVRNGGLNSPFSAMGFGPVGSPEFEDALT 492
            ALV G GYANITD+G+TEIERSTTR+DTRQFS F E SYDV++R R+FAGARYVNE+V STLVESFVIGIFSPIFTDP DIFAPIYFPVPNDVEAL APGGPG SFDFKLNTFLPR  FEYD++DD MLYGT+ARGVRNGGLNSPFSA+GFGPVGSPEFEDALT
Sbjct:  391 ALVTGDGYANITDTGSTEIERSTTRIDTRQFSGFVELSYDVTDRLRLFAGARYVNEKVTSTLVESFVIGIFSPIFTDPSDIFAPIYFPVPNDVEALNAPGGPGTSFDFKLNTFLPRVAFEYDISDDVMLYGTLARGVRNGGLNSPFSALGFGPVGSPEFEDALT 554          
BLAST of mRNA_P-wetherbeei_contig58546.1.1 vs. uniprot
Match: UPI001F4F7495 (TonB-dependent receptor n=1 Tax=Sphingomonas sp. LaA6.9 TaxID=2919914 RepID=UPI001F4F7495)

HSP 1 Score: 285 bits (730), Expect = 3.660e-89
Identity = 140/164 (85.37%), Postives = 150/164 (91.46%), Query Frame = 1
Query:    1 ALVAGPGYANITDSGTTEIERSTTRVDTRQFSAFAEFSYDVSERFRVFAGARYVNERVRSTLVESFVIGIFSPIFTDPDDIFAPIYFPVPNDVEALTAPGGPGVSFDFKLNTFLPRAGFEYDMTDDAMLYGTIARGVRNGGLNSPFSAMGFGPVGSPEFEDALT 492
            ALV+G GYANITDSGTTEIERSTTRVDT Q+S F E SYDVSERFR+FAGARYVNE+V STLVES+VIGIFSPIFTDP DIFAPIYFPVPNDVEAL APGGPG SFDFKL+T LPR GFE+D  D+ +LYGT+ARGVRNGGLNSPFSAMGFGPVGSPEFEDALT
Sbjct:  409 ALVSGDGYANITDSGTTEIERSTTRVDTVQYSGFVELSYDVSERFRLFAGARYVNEKVTSTLVESYVIGIFSPIFTDPSDIFAPIYFPVPNDVEALNAPGGPGTSFDFKLDTVLPRLGFEFDAADNVLLYGTLARGVRNGGLNSPFSAMGFGPVGSPEFEDALT 572          
BLAST of mRNA_P-wetherbeei_contig58546.1.1 vs. uniprot
Match: A0A7W7B0F3_9SPHN (Outer membrane receptor protein involved in Fe transport n=1 Tax=Sphingosinicella soli TaxID=333708 RepID=A0A7W7B0F3_9SPHN)

HSP 1 Score: 273 bits (698), Expect = 1.010e-86
Identity = 132/150 (88.00%), Postives = 144/150 (96.00%), Query Frame = 1
Query:    1 ALVAGPGYANITDSGTTEIERSTTRVDTRQFSAFAEFSYDVSERFRVFAGARYVNERVRSTLVESFVIGIFSPIFTDPDDIFAPIYFPVPNDVEALTAPGGPGVSFDFKLNTFLPRAGFEYDMTDDAMLYGTIARGVRNGGLNSPFSAMG 450
            ALV+GPGYANIT+SGTTEIER+TTR DTRQFSAFAE +YDVSERFRVFAGARYVNE+V STLVES+VIGIFSPI TDPDDIFAP+YFPVPNDVEALTAPGGPGVSFDFKL+TFLPRAGFE+D+TD AM YGT+ARGVRNGGLNSPFSA+G
Sbjct:  409 ALVSGPGYANITESGTTEIERTTTRTDTRQFSAFAELNYDVSERFRVFAGARYVNEKVTSTLVESYVIGIFSPILTDPDDIFAPVYFPVPNDVEALTAPGGPGVSFDFKLSTFLPRAGFEFDVTDSAMFYGTVARGVRNGGLNSPFSALG 558          
BLAST of mRNA_P-wetherbeei_contig58546.1.1 vs. uniprot
Match: UPI001CA656C4 (TonB-dependent receptor n=1 Tax=Sphingomonas colocasiae TaxID=1848973 RepID=UPI001CA656C4)

HSP 1 Score: 279 bits (713), Expect = 1.130e-86
Identity = 134/164 (81.71%), Postives = 151/164 (92.07%), Query Frame = 1
Query:    1 ALVAGPGYANITDSGTTEIERSTTRVDTRQFSAFAEFSYDVSERFRVFAGARYVNERVRSTLVESFVIGIFSPIFTDPDDIFAPIYFPVPNDVEALTAPGGPGVSFDFKLNTFLPRAGFEYDMTDDAMLYGTIARGVRNGGLNSPFSAMGFGPVGSPEFEDALT 492
            ALV G GYANITD+GTTEIER+TTRVDTRQFS F E +Y VS+RFR+FAG RYVNE+VRSTLVES+VIGIFSPIF++P DI+AP+YFPVPNDVE+LTAPGGPGVSFDFKLNTFLPR GFE+D+ + AMLYGT+ARGVRNGGLNSPFSA+GFGPVGS  FEDALT
Sbjct:  408 ALVTGDGYANITDTGTTEIERTTTRVDTRQFSGFVELNYKVSDRFRLFAGTRYVNEKVRSTLVESYVIGIFSPIFSNPADIYAPVYFPVPNDVESLTAPGGPGVSFDFKLNTFLPRLGFEFDVAETAMLYGTVARGVRNGGLNSPFSALGFGPVGSAAFEDALT 571          
BLAST of mRNA_P-wetherbeei_contig58546.1.1 vs. uniprot
Match: UPI001CD6A69E (TonB-dependent receptor n=1 Tax=Sphingomonas sp. R647 TaxID=2875233 RepID=UPI001CD6A69E)

HSP 1 Score: 268 bits (685), Expect = 1.410e-82
Identity = 130/164 (79.27%), Postives = 144/164 (87.80%), Query Frame = 1
Query:    1 ALVAGPGYANITDSGTTEIERSTTRVDTRQFSAFAEFSYDVSERFRVFAGARYVNERVRSTLVESFVIGIFSPIFTDPDDIFAPIYFPVPNDVEALTAPGGPGVSFDFKLNTFLPRAGFEYDMTDDAMLYGTIARGVRNGGLNSPFSAMGFGPVGSPEFEDALT 492
            ALV+G GYANITD+G+TEIERSTT+ DTRQFS F E SY  ++R R+FAGARYVNE+V STLVESFVIGIFSPIFT+P DIFAPIYFPVPNDV+AL APGGPG SFDFKLNTFLPR   EYD+ DD M+YGT+ARGVRNGGLNSPFSA+GFGPVGS  F DALT
Sbjct:  407 ALVSGDGYANITDTGSTEIERSTTQTDTRQFSGFVELSYAATDRLRLFAGARYVNEKVTSTLVESFVIGIFSPIFTNPADIFAPIYFPVPNDVDALNAPGGPGTSFDFKLNTFLPRVAIEYDVNDDVMVYGTLARGVRNGGLNSPFSALGFGPVGSQAFNDALT 570          
BLAST of mRNA_P-wetherbeei_contig58546.1.1 vs. uniprot
Match: A0A4S2HEX7_9PROT (TonB-dependent receptor n=1 Tax=Marinicauda pacifica TaxID=1133559 RepID=A0A4S2HEX7_9PROT)

HSP 1 Score: 102 bits (253), Expect = 4.380e-22
Identity = 58/168 (34.52%), Postives = 92/168 (54.76%), Query Frame = 1
Query:    4 LVAGPGYANITDSGTTEIERSTTRVDTRQFSAFAEFSYDVSERFRVFAGARYVNERVRSTLVESFVIGIFSPIFTDPDDIFA-----PIYFPVPNDVEALTAPGGPGVSFDFKLNTFLPRAGFEYDMTDDAMLYGTIARGVRNGGLNSPFSAMGFGPVGSPEFEDALT 492
             + G G+  +T   T  +    +   + Q+SAFAE +Y++++RFR+  GARYV + V ++L +  V+ +  P F    ++       PI F       A+    G G  F+F+L  FLPRAG E++++DD +LYG +ARG RNGG+ +  +A+G        F D LT
Sbjct:  386 FLTGDGFVTVTTPATENLATRLSSTVSEQYSAFAEVTYELTDRFRLIGGARYVKDTVTASLQQDNVVNLV-PEFDSGGNLIPWTESNPIGFV---STLAVLESAGVGTDFEFELEEFLPRAGAEFEVSDDILLYGNVARGARNGGIGNAIAALGASGGDQDVFLDNLT 549          
BLAST of mRNA_P-wetherbeei_contig58546.1.1 vs. uniprot
Match: A3UEF7_9PROT (TonB-dependent receptor n=2 Tax=unclassified Oceanicaulis TaxID=2632123 RepID=A3UEF7_9PROT)

HSP 1 Score: 97.1 bits (240), Expect = 2.440e-20
Identity = 52/154 (33.77%), Postives = 91/154 (59.09%), Query Frame = 1
Query:    4 LVAGPGYANITDSGTTEIERSTTRVDTRQFSAFAEFSYDVSERFRVFAGARYVNERVRSTLVESFVIGIFSPIFTDPDDIFA-----PIYFPVPNDVEALTAPGGPGVSFDFKLNTFLPRAGFEYDMTDDAMLYGTIARGVRNGGLNSPFSAMG 450
             + G G+  +T+  ++ +    +   + Q+SAFAEF+++++ER R+  G RYVN+ V + L +  V+ +  P F    ++       PI F   + ++ LT  G  G  F+F+L  FLPRAG E+++++D +LY  IA+G RNGG+ +  +A+G
Sbjct:  386 FLTGDGFVTVTNPSSSNLATRLSSTQSEQYSAFAEFTFELTERLRLIGGVRYVNDTVTAILQQDDVVNLV-PQFDGQGNLIPWTESNPIGFV--STLDLLTGAGF-GTEFEFELEKFLPRAGVEFELSEDMLLYANIAQGARNGGIGNAIAALG 535          
BLAST of mRNA_P-wetherbeei_contig58546.1.1 vs. uniprot
Match: UPI0009F27091 (TonB-dependent receptor n=1 Tax=Hyphomonas sp. Mor2 TaxID=1906738 RepID=UPI0009F27091)

HSP 1 Score: 89.4 bits (220), Expect = 1.180e-17
Identity = 60/165 (36.36%), Postives = 89/165 (53.94%), Query Frame = 1
Query:   19 GYANITDSGTTEIERSTTRVDTRQFSAFAEFSYDVSERFRVFAGARYVNERVRSTLVESFVIGIFSPIFTDPDDIFAPIYFPVPNDVEALTAPGGPGVSFDFKLNTFLPRAGFEYDMTDDAMLYGTIARGVRNGGLN---SPFS-----AMGFGPVGSPEFEDAL 489
            G   ++  GT  +      ++T ++S F E +Y+VS+R R+  GARY+ E V +TL E+F      P    P     P+   + + +  L+A  G G SF+F+L+  LPRAG E+D+ D+ +LY  +A GVR GG+N   S FS     A      GSPEF+ A 
Sbjct:  418 GLPAVSTLGTDVLATVDNVLETEEYSGFVELTYEVSDRLRLIGGARYIRETVTTTLNEAFAPINLVPALA-PFSASNPLI--ITDTIPILSA--GRGNSFEFELDRVLPRAGVEFDLKDNVLLYANVAVGVRQGGVNDLTSVFSLANAAAXXXXXPGSPEFDAAF 577          
BLAST of mRNA_P-wetherbeei_contig58546.1.1 vs. uniprot
Match: A0A059FPJ6_9PROT (TonB-dependent receptor n=2 Tax=Hyphomonas TaxID=85 RepID=A0A059FPJ6_9PROT)

HSP 1 Score: 84.3 bits (207), Expect = 6.520e-16
Identity = 51/148 (34.46%), Postives = 81/148 (54.73%), Query Frame = 1
Query:   19 GYANITDSGTTEIERSTTRVDTRQFSAFAEFSYDVSERFRVFAGARYVNERVRSTLVESFVIGIFSPIFTDPDDIFA-----PIYFPVPNDVEALTAPGGPGVSFDFKLNTFLPRAGFEYDMTDDAMLYGTIARGVRNGGLNSPFSAM 447
            G A +T   +  +    T  ++ Q+S F + +Y +++RFRV AGARY+++ V   LV + VI + +P F    +I       P+ F  P D+       G G  F+FKL+  LPR G E+D+ DD ++Y + A G RNGG+    +A+
Sbjct:  400 GCAPVTSPSSRFLLDQFTTTNSEQYSGFIDGTYSITDRFRVIAGARYIDDTVSVKLVTNNVINL-NPRFDGGGNIIPWTESDPLGFASPIDI---LVGAGFGDEFEFKLSKTLPRIGVEFDVNDDMLIYASAAEGTRNGGIGQAVAAL 543          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig58546.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A495RUV2_SPHMI2.750e-10297.56Outer membrane receptor protein involved in Fe tra... [more]
A0A1G3KWF4_9SPHN4.420e-9185.37Uncharacterized protein n=1 Tax=Sphingopyxis sp. R... [more]
UPI001F4F74953.660e-8985.37TonB-dependent receptor n=1 Tax=Sphingomonas sp. L... [more]
A0A7W7B0F3_9SPHN1.010e-8688.00Outer membrane receptor protein involved in Fe tra... [more]
UPI001CA656C41.130e-8681.71TonB-dependent receptor n=1 Tax=Sphingomonas coloc... [more]
UPI001CD6A69E1.410e-8279.27TonB-dependent receptor n=1 Tax=Sphingomonas sp. R... [more]
A0A4S2HEX7_9PROT4.380e-2234.52TonB-dependent receptor n=1 Tax=Marinicauda pacifi... [more]
A3UEF7_9PROT2.440e-2033.77TonB-dependent receptor n=2 Tax=unclassified Ocean... [more]
UPI0009F270911.180e-1736.36TonB-dependent receptor n=1 Tax=Hyphomonas sp. Mor... [more]
A0A059FPJ6_9PROT6.520e-1634.46TonB-dependent receptor n=2 Tax=Hyphomonas TaxID=8... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig58546contigP-wetherbeei_contig58546:1..495 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog314254.OA2633_05651
PFAMsPlug,TonB_dep_Rec
Model size495
Max annot lvl28211|Alphaproteobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue4e-21
EggNOG OGsCOG1629@1|root,COG4771@2|Bacteria,1PENC@1224|Proteobacteria,2VD9Y@28211|Alphaproteobacteria,43ZJZ@69657|Hyphomonadaceae
DescriptionTonB dependent receptor
Cds size495
COG categoryP
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186866.7405562-CDS-P-wetherbeei_contig58546:0..4951683186866.7405562-CDS-P-wetherbeei_contig58546:0..495Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig58546 1..495 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig58546.1.1prot_P-wetherbeei_contig58546.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig58546 1..495 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig58546.1.1

>prot_P-wetherbeei_contig58546.1.1 ID=prot_P-wetherbeei_contig58546.1.1|Name=mRNA_P-wetherbeei_contig58546.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=165bp
ALVAGPGYANITDSGTTEIERSTTRVDTRQFSAFAEFSYDVSERFRVFAG
ARYVNERVRSTLVESFVIGIFSPIFTDPDDIFAPIYFPVPNDVEALTAPG
GPGVSFDFKLNTFLPRAGFEYDMTDDAMLYGTIARGVRNGGLNSPFSAMG
FGPVGSPEFEDALT*
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mRNA from alignment at P-wetherbeei_contig58546:1..495+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig58546.1.1 ID=mRNA_P-wetherbeei_contig58546.1.1|Name=mRNA_P-wetherbeei_contig58546.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=495bp|location=Sequence derived from alignment at P-wetherbeei_contig58546:1..495+ (Phaeothamnion wetherbeei SAG_119_79)
GCCCTCGTTGCCGGCCCCGGATACGCCAACATCACGGACAGCGGCACAAC CGAGATCGAACGCTCGACCACGCGGGTCGACACGCGCCAGTTCTCGGCGT TCGCGGAATTCAGCTATGATGTTTCCGAGCGCTTCCGCGTCTTCGCGGGT GCGCGCTATGTGAACGAAAGGGTCAGATCGACGCTGGTCGAGTCCTTCGT GATCGGCATCTTCTCGCCGATCTTCACGGATCCCGATGACATCTTTGCAC CGATCTATTTCCCGGTTCCGAACGACGTGGAAGCCCTGACGGCGCCGGGC GGCCCTGGCGTGAGCTTTGATTTCAAGCTCAATACCTTCCTGCCGCGCGC CGGCTTCGAATATGACATGACCGACGATGCGATGCTTTATGGCACGATCG CACGCGGTGTCAGGAACGGCGGCCTCAACAGCCCGTTCTCGGCGATGGGC TTCGGCCCGGTCGGCTCGCCGGAATTCGAAGACGCGCTGACATAA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig58546:1..495+

>mRNA_P-wetherbeei_contig58546.1.1 ID=mRNA_P-wetherbeei_contig58546.1.1|Name=mRNA_P-wetherbeei_contig58546.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=495bp|location=Sequence derived from alignment at P-wetherbeei_contig58546:1..495+ (Phaeothamnion wetherbeei SAG_119_79)
GCCCTCGTTGCCGGCCCCGGATACGCCAACATCACGGACAGCGGCACAAC
CGAGATCGAACGCTCGACCACGCGGGTCGACACGCGCCAGTTCTCGGCGT
TCGCGGAATTCAGCTATGATGTTTCCGAGCGCTTCCGCGTCTTCGCGGGT
GCGCGCTATGTGAACGAAAGGGTCAGATCGACGCTGGTCGAGTCCTTCGT
GATCGGCATCTTCTCGCCGATCTTCACGGATCCCGATGACATCTTTGCAC
CGATCTATTTCCCGGTTCCGAACGACGTGGAAGCCCTGACGGCGCCGGGC
GGCCCTGGCGTGAGCTTTGATTTCAAGCTCAATACCTTCCTGCCGCGCGC
CGGCTTCGAATATGACATGACCGACGATGCGATGCTTTATGGCACGATCG
CACGCGGTGTCAGGAACGGCGGCCTCAACAGCCCGTTCTCGGCGATGGGC
TTCGGCCCGGTCGGCTCGCCGGAATTCGAAGACGCGCTGACATAA
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