mRNA_P-wetherbeei_contig58506.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig58506.1.1
Unique NamemRNA_P-wetherbeei_contig58506.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig58506.1.1 vs. uniprot
Match: D7FWU7_ECTSI (EF-hand, calcium binding motif n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWU7_ECTSI)

HSP 1 Score: 106 bits (265), Expect = 4.600e-25
Identity = 50/81 (61.73%), Postives = 60/81 (74.07%), Query Frame = 1 
Query:    1 TMAETEELLRHKILGSIGGGPYELLRAFRRMHRGRGIAVTVDDFHQAVRDFGFSMTPDEVERFFHAFDYDANGSIDFHEVC 243
            TMAE E+LLR KILGSIGGGP++LLRAFR+MHRGRG  V ++DF +AV+ F   +   EVE FF  FD D +G IDF E C
Sbjct:  258 TMAENEQLLRQKILGSIGGGPFQLLRAFRKMHRGRGTVVDLNDFREAVKTFSLGLGEPEVEAFFKGFDADGSGGIDFEEFC 338
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig58506.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FWU7_ECTSI4.600e-2561.73EF-hand, calcium binding motif n=1 Tax=Ectocarpus ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig58506contigP-wetherbeei_contig58506:2..244 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7FWU7
PFAMsEF-hand_8
Model size243
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons1
Evalue2.51e-25
EggNOG OGs28PG7@1|root,2QW47@2759|Eukaryota
DescriptionEF-hand domain pair
Cds size240
COG categoryS
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186866.3117206-UTR-P-wetherbeei_contig58506:1..41683186866.3117206-UTR-P-wetherbeei_contig58506:1..4Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig58506 2..4 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186866.3244457-CDS-P-wetherbeei_contig58506:4..2441683186866.3244457-CDS-P-wetherbeei_contig58506:4..244Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig58506 5..244 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig58506.1.1prot_P-wetherbeei_contig58506.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig58506 5..244 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig58506.1.1

>prot_P-wetherbeei_contig58506.1.1 ID=prot_P-wetherbeei_contig58506.1.1|Name=mRNA_P-wetherbeei_contig58506.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=80bp
MAETEELLRHKILGSIGGGPYELLRAFRRMHRGRGIAVTVDDFHQAVRDF
GFSMTPDEVERFFHAFDYDANGSIDFHEVC
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mRNA from alignment at P-wetherbeei_contig58506:2..244+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig58506.1.1 ID=mRNA_P-wetherbeei_contig58506.1.1|Name=mRNA_P-wetherbeei_contig58506.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=243bp|location=Sequence derived from alignment at P-wetherbeei_contig58506:2..244+ (Phaeothamnion wetherbeei SAG_119_79)
ACCATGGCGGAGACGGAGGAGCTGCTGCGGCACAAGATCCTCGGCAGCAT
CGGCGGCGGACCATACGAGCTGCTGCGGGCGTTCCGGCGGATGCACCGCG
GCCGCGGCATCGCCGTGACAGTGGATGACTTCCATCAGGCGGTGCGCGAC
TTTGGCTTCTCGATGACGCCCGATGAGGTAGAGCGGTTCTTCCACGCGTT
CGACTACGACGCCAACGGCTCCATCGACTTTCACGAGGTATGC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig58506:2..244+

>mRNA_P-wetherbeei_contig58506.1.1 ID=mRNA_P-wetherbeei_contig58506.1.1|Name=mRNA_P-wetherbeei_contig58506.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=240bp|location=Sequence derived from alignment at P-wetherbeei_contig58506:2..244+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGCGGAGACGGAGGAGCTGCTGCGGCACAAGATCCTCGGCAGCATCGG
CGGCGGACCATACGAGCTGCTGCGGGCGTTCCGGCGGATGCACCGCGGCC
GCGGCATCGCCGTGACAGTGGATGACTTCCATCAGGCGGTGCGCGACTTT
GGCTTCTCGATGACGCCCGATGAGGTAGAGCGGTTCTTCCACGCGTTCGA
CTACGACGCCAACGGCTCCATCGACTTTCACGAGGTATGC
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