mRNA_P-wetherbeei_contig58502.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig58502.1.1
Unique NamemRNA_P-wetherbeei_contig58502.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig58502.1.1 vs. uniprot
Match: A0A7Y4X2U9_9DELT (NAD-binding protein n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A7Y4X2U9_9DELT)

HSP 1 Score: 209 bits (533), Expect = 1.630e-63
Identity = 103/165 (62.42%), Postives = 122/165 (73.94%), Query Frame = 1
Query:    1 LAALNWGGLYRNLRKRVPAGVYRTRQQVLTIETVNDQSVRLRFADGGAAQFSLVVCADGYASIGRQTLFPDTTLNYAGYVLWRGQLPEAAL-SSSPPLEVGIRCVGYDGGHGIFYFVPGADDSVAVGARLVNWGVYVAVPPAELAAFMTDNSGRVHQGSLPPGMM 492
            L  LNWGGLYRNLRKRVP  VYRT Q+V+ +   +   V +  A+G   +F LVVCADGYAS+GR+TLFP+  + YAGYVLWRG + E  L   S PL  G+RC+GY GGHGIFYFVPG D S+A G RLVNWGVYV  P A+LAAF+TD  G+VH+GSLPPG M
Sbjct:  105 LDLLNWGGLYRNLRKRVPDSVYRTGQRVVALHEQSGGRVAVEMANGETPEFDLVVCADGYASLGRRTLFPEVAIQYAGYVLWRGFIMEDELRGESHPLNSGVRCLGYPGGHGIFYFVPGPDGSLAPGNRLVNWGVYV--PVADLAAFLTDKEGKVHEGSLPPGAM 267          
BLAST of mRNA_P-wetherbeei_contig58502.1.1 vs. uniprot
Match: A0A3D5DF31_9GAMM (FAD_binding_3 domain-containing protein n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A3D5DF31_9GAMM)

HSP 1 Score: 205 bits (522), Expect = 6.860e-62
Identity = 93/167 (55.69%), Postives = 114/167 (68.26%), Query Frame = 1
Query:    1 LAALNWGGLYRNLRKRVPAGVYRTRQQVLTIETVNDQSVRLRFADGGAAQFSLVVCADGYASIGRQTLFPDTTLNYAGYVLWRGQLPEAALSSSPPLEVGIRCVGYDGGHGIFYFVPGADDSVAVGARLVNWGVYVAVPPAELAAFMTDNSGRVHQGSLPPGMMPLA 501
            L  LNWGGLY NLR RVP  +YR    V+ ++  N Q V +  A+G   +F LVVCADGY S+GR TLFPD T++YAGYVLWRG + E  +    PL+ G+RC+GY GGHGIFYFVPG D S+  G RLVNWG+Y+ +P  E+A F+TD  G    GSL PG MP A
Sbjct:  105 LGVLNWGGLYNNLRARVPDAIYRPNHNVVALQQTNPQQVEVILANGATHKFDLVVCADGYTSLGRSTLFPDVTVDYAGYVLWRGFIMEREIGKPKPLDDGVRCLGYPGGHGIFYFVPGPDGSIEPGERLVNWGMYITIPETEIADFLTDKQGIKRTGSLSPGSMPTA 271          
BLAST of mRNA_P-wetherbeei_contig58502.1.1 vs. uniprot
Match: A0A5C7GLM1_9FLAO (NAD(P)-binding protein n=1 Tax=Seonamhaeicola maritimus TaxID=2591822 RepID=A0A5C7GLM1_9FLAO)

HSP 1 Score: 140 bits (354), Expect = 5.280e-37
Identity = 68/161 (42.24%), Postives = 96/161 (59.63%), Query Frame = 1
Query:   16 WGGLYRNLRKRVPAGVYRTRQQVLTIETVNDQSVRLRFADGGAAQFSLVVCADGYASIGRQTLFPDTTLNYAGYVLWRGQLPEAALSSSPPLEVGIRCVGYDG--GHGIFYFVPGADDSVAVGARLVNWGVYVAVPPAELAAFMTDNSGRVHQGSLPPGMM 492
            W  L+++LRK VP+  Y+   +++     ND  V L   +     F LV+ ADGY S+GRQ +FPD  L Y GY+LWRG LPE  +S+S PLE  I  + Y    GH + Y++P +D +   G R+ NW  Y+A+P  EL   +TD +G + QG+LPPG M
Sbjct:  104 WNELWKHLRKNVPSNRYKAGIKIVKANLNNDSKVELTTENNKREVFDLVLFADGYNSLGRQIIFPDKKLEYRGYILWRGLLPENKISNSCPLENKILRLSYQDKPGHNVVYYIPNSDGTSDKGNRVFNWAAYIAIPEDELNNLLTDKNGNIRQGTLPPGYM 264          
BLAST of mRNA_P-wetherbeei_contig58502.1.1 vs. uniprot
Match: UPI001F5A27A3 (NAD(P)-binding protein n=3 Tax=unclassified Aestuariivivens TaxID=2626726 RepID=UPI001F5A27A3)

HSP 1 Score: 137 bits (345), Expect = 1.390e-35
Identity = 66/159 (41.51%), Postives = 95/159 (59.75%), Query Frame = 1
Query:   16 WGGLYRNLRKRVPAGVYRTRQQVLTIETVNDQSVRLRFADGGAAQFSLVVCADGYASIGRQTLFPDTTLNYAGYVLWRGQLPEAALSSSPPLEVGIRCVGYDG--GHGIFYFVPGADDSVAVGARLVNWGVYVAVPPAELAAFMTDNSGRVHQGSLPPG 486
            W  L++NLR+ VP  +YR   +++  + +    V L  + G    F LV+ ADGY S+GR+ +FP+  L Y GY+LWRG L E+ +    PL+  I  + Y G  GH + YF+P  + SV  G R+ NW  Y+A+P AEL   MTD +GR+  G+LPPG
Sbjct:  120 WNELWKNLRRNVPNKLYRAGVKIVDAKCLPQGQVELTTSLGNTEHFDLVLFADGYQSLGRKLMFPEKKLKYRGYILWRGLLKESEMDGDCPLKDEILRLSYTGEPGHNVVYFIPDQNGSVKKGQRVFNWAAYIAIPEAELDNVMTDKTGRLRNGTLPPG 278          
BLAST of mRNA_P-wetherbeei_contig58502.1.1 vs. uniprot
Match: UPI001F569C30 (NAD(P)-binding protein n=1 Tax=Aestuariivivens sp. AH-MY3 TaxID=2913554 RepID=UPI001F569C30)

HSP 1 Score: 135 bits (341), Expect = 3.790e-35
Identity = 66/159 (41.51%), Postives = 94/159 (59.12%), Query Frame = 1
Query:   16 WGGLYRNLRKRVPAGVYRTRQQVLTIETVNDQSVRLRFADGGAAQFSLVVCADGYASIGRQTLFPDTTLNYAGYVLWRGQLPEAALSSSPPLEVGIRCVGYDG--GHGIFYFVPGADDSVAVGARLVNWGVYVAVPPAELAAFMTDNSGRVHQGSLPPG 486
            W  L++ LR  VP   YR   +++  +++ +  V L    G  A F LV+ ADGY S+GRQ LFP+  L Y GY+LWRG L E+ +  + PL   I  + Y G  GH + YF+P  + SV  G R+ NW  Y+A+P A+L   MTD +G++  G+LPPG
Sbjct:   99 WNELWQKLRHNVPNAHYRAGIKIVDAKSMPNGKVELTTHSGNKAHFDLVLFADGYQSLGRQLLFPEKKLKYRGYILWRGLLKESEMDIACPLSDDILRLSYKGEPGHNVVYFIPDQNGSVKEGERVFNWAAYIAIPEAKLDNIMTDKTGKIRSGTLPPG 257          
BLAST of mRNA_P-wetherbeei_contig58502.1.1 vs. uniprot
Match: A0A2N6A216_9BACT (Uncharacterized protein (Fragment) n=1 Tax=Ignavibacteria bacterium TaxID=2053306 RepID=A0A2N6A216_9BACT)

HSP 1 Score: 130 bits (328), Expect = 5.140e-34
Identity = 64/166 (38.55%), Postives = 94/166 (56.63%), Query Frame = 1
Query:    1 LAALNWGGLYRNLRKRVPAGVYRTRQQVLTIETVNDQSVRLRFADGGAAQFSLVVCADGYASIGRQTLFPDTTLNYAGYVLWRGQLPEAALSSSPPLEVGIRCVGY--DGGHGIFYFVPGADDSVAVGARLVNWGVYVAVPPAELAAFMTDNSGRVHQGSLPPGMM 492
            L   +W  L+ NLR+RVP   Y   Q V +    +D +V L   DG    F LV+ ADGY S GR+ LFPD  L Y GY+LWRG LPE+ ++ S PL   +  + +  + G+ + YF+P  + S   G+R+ NW  Y+ +   ++  FM D +G   +G++PPG M
Sbjct:   24 LQTFHWSALWENLRERVPDISYHQGQAVQSARMKDDNTVILELEDGVEGVFDLVLFADGYRSTGRRLLFPDAALQYRGYMLWRGLLPESEITDSTPLGASVPRLSHQQEPGNTVMYFIPDENGSTEKGSRVCNWASYIPLLEEDIPQFMIDRNGHPREGAIPPGQM 189          
BLAST of mRNA_P-wetherbeei_contig58502.1.1 vs. uniprot
Match: A0A2S6QFU3_9PROT (2,6-dihydroxypyridine 3-monooxygenase n=1 Tax=Alphaproteobacteria bacterium MarineAlpha12_Bin1 TaxID=2013107 RepID=A0A2S6QFU3_9PROT)

HSP 1 Score: 121 bits (303), Expect = 1.830e-29
Identity = 61/158 (38.61%), Postives = 86/158 (54.43%), Query Frame = 1
Query:    7 ALNWGGLYRNLRKRVPAGVYRTRQQVLTIETVNDQSVRLRFADGGAAQFSLVVCADGYASIGRQTLFPDTTLNYAGYVLWRGQLPEAALSSSPPLEVGIRCVGYDGGHGIFYFVPGADDSVAVGARLVNWGVYVAVPPAELAAFMTDNSGRVHQGSLP 480
            A +WG LYR+LRKRVP  +Y+   +V  +   +DQ+V +R  +     F LV+CADGY S+GR+TL+P + ++ A Y LWRG + E+ L      E  I   GY  GHG  Y+VP       VG R VNW  +  +    +     D+ G V +G  P
Sbjct:  112 ANHWGVLYRSLRKRVPDNIYQAGSEVTHLRENDDQTVSIRIKNKNWQTFDLVICADGYESLGRKTLYPKSEISGAKYFLWRGMIDESTLPIPSMYESCIPFFGYPYGHGFVYYVPSPKYGAEVGKRRVNWAFHETIANKNIPGITPDDKGFVRKGLAP 269          
BLAST of mRNA_P-wetherbeei_contig58502.1.1 vs. uniprot
Match: A0A1Q4D592_9PSEU (Monooxygenase n=1 Tax=Pseudonocardia sp. 73-21 TaxID=1895809 RepID=A0A1Q4D592_9PSEU)

HSP 1 Score: 114 bits (284), Expect = 5.450e-27
Identity = 66/161 (40.99%), Postives = 87/161 (54.04%), Query Frame = 1
Query:   13 NWGGLYRNLRKRVPAGVYRTRQQVLTIETVNDQSVRLRFADGGAAQFSLVVCADGYASIGRQTLFPDTTLNYAGYVLWRGQLPEAALSSSPPLEVGIRCVGYD---GGHGIFYFVPGADDSVAVGARLVNWGVYVAVPPAELAAFMTDNSGRVHQGSLPPG 486
            +W  +YR L   +    YR  + V +  T +   V++ FADGGA +  L+VCADG  S+GR TL P+    YAGYV WRG +PE  L   P  +     + Y      H + Y +PG D +V VG RLVN   Y  V   +LAAF+TD  G+    SLPPG
Sbjct:   93 SWNTIYRTLLDAIGTERYRLGRDVTSFAT-DGTGVQVCFADGGAVRADLLVCADGIGSVGRSTLLPEVEARYAGYVAWRGTVPERELDG-PTFDAVHDALTYQVLSDSHVLVYPIPGPDGAVDVGERLVNMVWYRNVAEPDLAAFLTDRDGQPRPVSLPPG 251          
BLAST of mRNA_P-wetherbeei_contig58502.1.1 vs. uniprot
Match: A0A2E5Z9D3_9CHLR (Uncharacterized protein n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A2E5Z9D3_9CHLR)

HSP 1 Score: 111 bits (277), Expect = 7.390e-26
Identity = 70/173 (40.46%), Postives = 91/173 (52.60%), Query Frame = 1
Query:    1 LAALNWGGLYRNLRKRVPAGVYRTRQQVLTIETVNDQSVRLRFADGGAAQFSLVVCADGYASIGRQTLFPDTTLNYAGYVLWRGQLPEAALSS-SPPLE------VGIRCVGYDGGHGIFYFVPGADDSVAVGARLVNWGVYVAVPPAELAAFMTDNSGRVH-QGSLPPGMMP 495
            LA  NWG LYR+LR RV    Y T   V+ I T +     L F +G A +F LVVCADG  SIGR  +   + +NYAGY+ WRG +PE  + +   PL+      VG   +  D GHGI Y +PG +     G RL+NW  Y  V    L   +   +GR H   S+ PG +P
Sbjct:   96 LALTNWGALYRDLRSRVDDDSYHTGLPVIKI-TQDKIGAYLHFENGTAEKFDLVVCADGVDSIGRSLVSSGSCINYAGYIAWRGFIPETEMPNLEGPLQSNVNELVGQHALMSDKGHGIVYLIPGFNGETKQGERLINWLWYENVAKENLDEAL---AGRTHGNSSVQPGYVP 264          
BLAST of mRNA_P-wetherbeei_contig58502.1.1 vs. uniprot
Match: A0A7G7MCQ2_9PSEU (Monooxygenase n=1 Tax=Pseudonocardia sp. CGMCC 4.1532 TaxID=2761535 RepID=A0A7G7MCQ2_9PSEU)

HSP 1 Score: 110 bits (275), Expect = 1.090e-25
Identity = 64/161 (39.75%), Postives = 84/161 (52.17%), Query Frame = 1
Query:   13 NWGGLYRNLRKRVPAGVYRTRQQVLTIETVNDQSVRLRFADGGAAQFSLVVCADGYASIGRQTLFPDTTLNYAGYVLWRGQLPEAALSSSPPLEVGIRCVGYD---GGHGIFYFVPGADDSVAVGARLVNWGVYVAVPPAELAAFMTDNSGRVHQGSLPPG 486
            +W  +YR L     A  YR  + + +        VR+RFADG   +  L+VCADG  S+ R  L P+    YAGYV WRG +PE  L   P  +     + Y    G H + Y +PG D +VAVG RL+N   Y  V   +LAAF+TD  G+    SLPPG
Sbjct:   93 SWNTVYRTLLDAFGADRYRLGRDMTSFAPDPAGGVRVRFADGEDVRTDLLVCADGIGSVARSLLLPEVGARYAGYVAWRGTVPERELDG-PAFDALHDALTYQVLPGSHVLVYPIPGPDGAVAVGERLINMVWYRNVAEPDLAAFLTDRDGQPRPVSLPPG 252          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig58502.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7Y4X2U9_9DELT1.630e-6362.42NAD-binding protein n=1 Tax=Deltaproteobacteria ba... [more]
A0A3D5DF31_9GAMM6.860e-6255.69FAD_binding_3 domain-containing protein n=1 Tax=Ga... [more]
A0A5C7GLM1_9FLAO5.280e-3742.24NAD(P)-binding protein n=1 Tax=Seonamhaeicola mari... [more]
UPI001F5A27A31.390e-3541.51NAD(P)-binding protein n=3 Tax=unclassified Aestua... [more]
UPI001F569C303.790e-3541.51NAD(P)-binding protein n=1 Tax=Aestuariivivens sp.... [more]
A0A2N6A216_9BACT5.140e-3438.55Uncharacterized protein (Fragment) n=1 Tax=Ignavib... [more]
A0A2S6QFU3_9PROT1.830e-2938.612,6-dihydroxypyridine 3-monooxygenase n=1 Tax=Alph... [more]
A0A1Q4D592_9PSEU5.450e-2740.99Monooxygenase n=1 Tax=Pseudonocardia sp. 73-21 Tax... [more]
A0A2E5Z9D3_9CHLR7.390e-2640.46Uncharacterized protein n=1 Tax=Chloroflexi bacter... [more]
A0A7G7MCQ2_9PSEU1.090e-2539.75Monooxygenase n=1 Tax=Pseudonocardia sp. CGMCC 4.1... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig58502contigP-wetherbeei_contig58502:3..503 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog1510531.JQJJ01000005_gene5066
PFAMsFAD_binding_3,NAD_binding_8
Model size501
Max annot lvl28211|Alphaproteobacteria
Hectar predicted targeting categorymitochondrion
Exons1
Evalue1e-24
EggNOG OGsCOG0654@1|root,COG0654@2|Bacteria,1QXV0@1224|Proteobacteria,2TWCX@28211|Alphaproteobacteria,3JZT4@41294|Bradyrhizobiaceae
DescriptionFAD binding domain
Cds size501
COG categoryCH
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186866.2408075-CDS-P-wetherbeei_contig58502:2..5031683186866.2408075-CDS-P-wetherbeei_contig58502:2..503Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig58502 3..503 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig58502.1.1prot_P-wetherbeei_contig58502.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig58502 3..503 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig58502.1.1

>prot_P-wetherbeei_contig58502.1.1 ID=prot_P-wetherbeei_contig58502.1.1|Name=mRNA_P-wetherbeei_contig58502.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=167bp
LAALNWGGLYRNLRKRVPAGVYRTRQQVLTIETVNDQSVRLRFADGGAAQ
FSLVVCADGYASIGRQTLFPDTTLNYAGYVLWRGQLPEAALSSSPPLEVG
IRCVGYDGGHGIFYFVPGADDSVAVGARLVNWGVYVAVPPAELAAFMTDN
SGRVHQGSLPPGMMPLA
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mRNA from alignment at P-wetherbeei_contig58502:3..503-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig58502.1.1 ID=mRNA_P-wetherbeei_contig58502.1.1|Name=mRNA_P-wetherbeei_contig58502.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=501bp|location=Sequence derived from alignment at P-wetherbeei_contig58502:3..503- (Phaeothamnion wetherbeei SAG_119_79)
CTGGCGGCGCTGAACTGGGGTGGCCTGTATCGCAATCTGCGCAAACGTGT GCCGGCTGGCGTGTACCGCACCCGCCAGCAAGTGCTCACCATCGAAACAG TGAATGATCAATCAGTGCGACTGCGCTTCGCCGACGGCGGCGCGGCGCAG TTCTCGCTGGTGGTATGCGCCGACGGCTATGCCTCCATCGGCCGCCAGAC CCTGTTCCCCGACACGACGCTCAACTACGCGGGCTATGTGCTGTGGCGCG GACAGTTGCCGGAAGCGGCCTTGTCGTCCTCACCGCCGCTTGAAGTCGGT ATACGCTGCGTGGGCTACGACGGTGGCCACGGCATTTTCTATTTTGTGCC GGGGGCCGACGATTCGGTGGCGGTCGGCGCGCGGCTGGTGAACTGGGGCG TATACGTGGCGGTACCGCCCGCTGAACTGGCTGCTTTCATGACCGATAAC AGCGGCCGCGTGCATCAGGGCTCACTGCCGCCCGGCATGATGCCGCTAGC G
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Coding sequence (CDS) from alignment at P-wetherbeei_contig58502:3..503-

>mRNA_P-wetherbeei_contig58502.1.1 ID=mRNA_P-wetherbeei_contig58502.1.1|Name=mRNA_P-wetherbeei_contig58502.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=501bp|location=Sequence derived from alignment at P-wetherbeei_contig58502:3..503- (Phaeothamnion wetherbeei SAG_119_79)
CTGGCGGCGCTGAACTGGGGTGGCCTGTATCGCAATCTGCGCAAACGTGT
GCCGGCTGGCGTGTACCGCACCCGCCAGCAAGTGCTCACCATCGAAACAG
TGAATGATCAATCAGTGCGACTGCGCTTCGCCGACGGCGGCGCGGCGCAG
TTCTCGCTGGTGGTATGCGCCGACGGCTATGCCTCCATCGGCCGCCAGAC
CCTGTTCCCCGACACGACGCTCAACTACGCGGGCTATGTGCTGTGGCGCG
GACAGTTGCCGGAAGCGGCCTTGTCGTCCTCACCGCCGCTTGAAGTCGGT
ATACGCTGCGTGGGCTACGACGGTGGCCACGGCATTTTCTATTTTGTGCC
GGGGGCCGACGATTCGGTGGCGGTCGGCGCGCGGCTGGTGAACTGGGGCG
TATACGTGGCGGTACCGCCCGCTGAACTGGCTGCTTTCATGACCGATAAC
AGCGGCCGCGTGCATCAGGGCTCACTGCCGCCCGGCATGATGCCGCTAGC
G
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