mRNA_P-wetherbeei_contig5850.1.4 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig5850.1.4
Unique NamemRNA_P-wetherbeei_contig5850.1.4
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig5850.1.4 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig5850contigP-wetherbeei_contig5850:684..1582 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size553
Hectar predicted targeting categoryother localisation
Exons4
Cds size549
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186866.1871517-CDS-P-wetherbeei_contig5850:683..7681683186866.1871517-CDS-P-wetherbeei_contig5850:683..768Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5850 684..768 +
1683186866.1974592-CDS-P-wetherbeei_contig5850:850..9221683186866.1974592-CDS-P-wetherbeei_contig5850:850..922Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5850 851..922 +
1683186866.206131-CDS-P-wetherbeei_contig5850:1033..11081683186866.206131-CDS-P-wetherbeei_contig5850:1033..1108Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5850 1034..1108 +
1683186866.2153528-CDS-P-wetherbeei_contig5850:1263..15801683186866.2153528-CDS-P-wetherbeei_contig5850:1263..1580Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5850 1264..1580 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig5850.1.4prot_P-wetherbeei_contig5850.1.4Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig5850 684..1580 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig5850.1.4

>prot_P-wetherbeei_contig5850.1.4 ID=prot_P-wetherbeei_contig5850.1.4|Name=mRNA_P-wetherbeei_contig5850.1.4|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=183bp
FLFAGQIPESIGLLVLLKFLYLDGNALEGAIPAEISDLKHLEELMLSDNL
LEGAIPWKMGGLVHLALATFSGNNALEGNPGDLTSPYDVQNWQATLPLHP
PSPPGKQQPTTDMIYQAVIGAQRDICGVESLTRQLKVSVSSIAAEVDGIK
AQICKISNILDALIIGQLECPKLFLLAPMSEEL
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mRNA from alignment at P-wetherbeei_contig5850:684..1582+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig5850.1.4 ID=mRNA_P-wetherbeei_contig5850.1.4|Name=mRNA_P-wetherbeei_contig5850.1.4|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=899bp|location=Sequence derived from alignment at P-wetherbeei_contig5850:684..1582+ (Phaeothamnion wetherbeei SAG_119_79)
TTTCTCTTCGCAGGCCAAATTCCGGAGTCCATTGGGCTCTTGGTTTTGCT
TAAGTTTCTCTACCTCGACGGCAACGCATTGGAGGGTGAGACAGCGTAGC
GATTGTTGTATTGCGGTCATTTATGTTTCTGACCTTCCCCCACATCAGCT
TTTGTTGTAACTCGCAGGAGCTATCCCAGCAGAGATTTCGGACCTAAAAC
ATTTGGAAGAGCTGATGCTGTCTGACAACCTCCTTGAAGGTTAGTACGGT
CTTCGTTGTGTTTTGCGAATAGAATGAGCGTCTATCAAGGAAACTCGGGC
GAGGAAGAGATTGCTAAAAATCTGTCCTTGTTTCCGCCCGTGTTTCGTAG
GCGCGATCCCGTGGAAGATGGGCGGCCTCGTGCATCTCGCCTTAGCCACA
TTCTCCGGCAACAACGCCCTCGAAGGTAAGGAACAAGCAGACAGAAAAAA
GAGAAGGGAAAGCGCTGGACCGAAGGTGCGACGTTTAGTCGTGGTGATCG
AAGATCAGTTTGAGCATCGATGGTTTCAGATGGTTTTAAACTCTTGCCAA
AAAATTCTTGCTTCCACTGCCCCGATGCAGGCAATCCCGGCGATTTGACC
AGCCCATATGACGTACAAAACTGGCAGGCAACCCTCCCACTACACCCGCC
GTCGCCGCCGGGCAAGCAACAGCCCACAACAGATATGATATATCAGGCGG
TGATCGGCGCGCAACGCGACATATGTGGCGTGGAATCGCTGACACGCCAG
CTGAAGGTGTCGGTGTCCAGTATCGCCGCGGAGGTGGATGGCATAAAGGC
TCAAATATGCAAGATTTCCAACATACTGGACGCCCTCATTATCGGGCAGC
TGGAATGTCCCAAGCTCTTCCTGCTGGCTCCGATGAGCGAAGAGCTGGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig5850:684..1582+

>mRNA_P-wetherbeei_contig5850.1.4 ID=mRNA_P-wetherbeei_contig5850.1.4|Name=mRNA_P-wetherbeei_contig5850.1.4|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=549bp|location=Sequence derived from alignment at P-wetherbeei_contig5850:684..1582+ (Phaeothamnion wetherbeei SAG_119_79)
TTTCTCTTCGCAGGCCAAATTCCGGAGTCCATTGGGCTCTTGGTTTTGCT
TAAGTTTCTCTACCTCGACGGCAACGCATTGGAGGGAGCTATCCCAGCAG
AGATTTCGGACCTAAAACATTTGGAAGAGCTGATGCTGTCTGACAACCTC
CTTGAAGGCGCGATCCCGTGGAAGATGGGCGGCCTCGTGCATCTCGCCTT
AGCCACATTCTCCGGCAACAACGCCCTCGAAGGCAATCCCGGCGATTTGA
CCAGCCCATATGACGTACAAAACTGGCAGGCAACCCTCCCACTACACCCG
CCGTCGCCGCCGGGCAAGCAACAGCCCACAACAGATATGATATATCAGGC
GGTGATCGGCGCGCAACGCGACATATGTGGCGTGGAATCGCTGACACGCC
AGCTGAAGGTGTCGGTGTCCAGTATCGCCGCGGAGGTGGATGGCATAAAG
GCTCAAATATGCAAGATTTCCAACATACTGGACGCCCTCATTATCGGGCA
GCTGGAATGTCCCAAGCTCTTCCTGCTGGCTCCGATGAGCGAAGAGCTG
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