mRNA_P-wetherbeei_contig58471.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig58471.1.1
Unique NamemRNA_P-wetherbeei_contig58471.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig58471.1.1 vs. uniprot
Match: A0A495RW69_SPHMI (Heat shock protein HslJ n=1 Tax=Sphingosinicella microcystinivorans TaxID=335406 RepID=A0A495RW69_SPHMI)

HSP 1 Score: 180 bits (456), Expect = 6.030e-55
Identity = 91/111 (81.98%), Postives = 96/111 (86.49%), Query Frame = 1 
Query:    1 RTLRFASAGAWESDTAENAATGGVAPPMPVPSHTVMRCGTEQLRVRLVDGQAEVVLDDGSPVMLPRLAREASAAETYTNGRMTLERQTSPQHGFRFARGRMALMPCILAQN 333
            RTLRFAS G WES TA     G  APPMPVPSH VMRCGTEQLRVRLVDGQAEVVLDDGS ++LPRL+ E  +AETYTNGRMTLERQTSPQHGFRFARGRMA+MPCILAQN
Sbjct:  139 RTLRFASTGEWESGTA-----GSAAPPMPVPSHIVMRCGTEQLRVRLVDGQAEVVLDDGSAILLPRLSGETGSAETYTNGRMTLERQTSPQHGFRFARGRMAMMPCILAQN 244
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BLAST of mRNA_P-wetherbeei_contig58471.1.1 vs. uniprot
Match: A0A7W7B230_9SPHN (Heat shock protein HslJ n=2 Tax=Sphingosinicella soli TaxID=333708 RepID=A0A7W7B230_9SPHN)

HSP 1 Score: 118 bits (296), Expect = 5.450e-31
Identity = 65/111 (58.56%), Postives = 74/111 (66.67%), Query Frame = 1 
Query:    1 RTLRFASAGAWESDTAENAATGGVAPPMPVPSHTVMRCGTEQLRVRLVDGQAEVVLDDGSPVMLPRLAREASAAETYTNGRMTLERQTSPQHGFRFARGRMALMPCILAQN 333
            R +RFA A    + ++ +A +   A PMP PSH VMRCG EQLRVR+    AEVVLD               AA+TYTNGRMTL+R T PQHGFRFARGRMALMPCILAQN
Sbjct:  120 RAIRFAKADVPSNQSSSHANS---AMPMPTPSHVVMRCGDEQLRVRIEGDTAEVVLDXXXXXXXXXXXXXXGAAQTYTNGRMTLQRVTEPQHGFRFARGRMALMPCILAQN 227
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig58471.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A495RW69_SPHMI6.030e-5581.98Heat shock protein HslJ n=1 Tax=Sphingosinicella m... [more]
A0A7W7B230_9SPHN5.450e-3158.56Heat shock protein HslJ n=2 Tax=Sphingosinicella s... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig58471contigP-wetherbeei_contig58471:169..504 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size336
Hectar predicted targeting categoryother localisation
Exons1
Cds size336
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186865.7630694-CDS-P-wetherbeei_contig58471:168..5041683186865.7630694-CDS-P-wetherbeei_contig58471:168..504Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig58471 169..504 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig58471.1.1prot_P-wetherbeei_contig58471.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig58471 169..504 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig58471.1.1

>prot_P-wetherbeei_contig58471.1.1 ID=prot_P-wetherbeei_contig58471.1.1|Name=mRNA_P-wetherbeei_contig58471.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=112bp
RTLRFASAGAWESDTAENAATGGVAPPMPVPSHTVMRCGTEQLRVRLVDG
QAEVVLDDGSPVMLPRLAREASAAETYTNGRMTLERQTSPQHGFRFARGR
MALMPCILAQN*
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mRNA from alignment at P-wetherbeei_contig58471:169..504-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig58471.1.1 ID=mRNA_P-wetherbeei_contig58471.1.1|Name=mRNA_P-wetherbeei_contig58471.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=336bp|location=Sequence derived from alignment at P-wetherbeei_contig58471:169..504- (Phaeothamnion wetherbeei SAG_119_79)
CGCACGCTCCGCTTTGCCAGCGCCGGAGCATGGGAGAGCGACACCGCCGA
AAACGCGGCCACAGGAGGCGTCGCCCCGCCAATGCCGGTTCCGTCGCACA
CCGTCATGCGCTGCGGCACAGAGCAGCTACGCGTCCGCCTTGTGGACGGC
CAGGCGGAAGTCGTCCTCGATGATGGCAGCCCCGTCATGCTTCCGCGGCT
CGCGCGTGAAGCGAGCGCCGCCGAAACCTACACCAACGGGCGCATGACGC
TGGAGCGCCAGACGTCGCCGCAGCACGGCTTCCGCTTCGCGCGCGGCCGC
ATGGCGCTGATGCCCTGCATTCTCGCGCAGAACTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig58471:169..504-

>mRNA_P-wetherbeei_contig58471.1.1 ID=mRNA_P-wetherbeei_contig58471.1.1|Name=mRNA_P-wetherbeei_contig58471.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=336bp|location=Sequence derived from alignment at P-wetherbeei_contig58471:169..504- (Phaeothamnion wetherbeei SAG_119_79)
CGCACGCTCCGCTTTGCCAGCGCCGGAGCATGGGAGAGCGACACCGCCGA
AAACGCGGCCACAGGAGGCGTCGCCCCGCCAATGCCGGTTCCGTCGCACA
CCGTCATGCGCTGCGGCACAGAGCAGCTACGCGTCCGCCTTGTGGACGGC
CAGGCGGAAGTCGTCCTCGATGATGGCAGCCCCGTCATGCTTCCGCGGCT
CGCGCGTGAAGCGAGCGCCGCCGAAACCTACACCAACGGGCGCATGACGC
TGGAGCGCCAGACGTCGCCGCAGCACGGCTTCCGCTTCGCGCGCGGCCGC
ATGGCGCTGATGCCCTGCATTCTCGCGCAGAACTGA
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