mRNA_P-wetherbeei_contig5843.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig5843.1.1
Unique NamemRNA_P-wetherbeei_contig5843.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig5843.1.1 vs. uniprot
Match: A0A3C0TXQ3_9PROT (Protein-tyrosine-phosphatase n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A3C0TXQ3_9PROT)

HSP 1 Score: 269 bits (687), Expect = 3.570e-90
Identity = 127/160 (79.38%), Postives = 142/160 (88.75%), Query Frame = 1
Query:    4 MEAKHVLFLCTGNSARSIMAEAVLNFYGMGRFRAYSAGSHPAGAVHPLTLDTLNIAGISTSGLRSKSWDEFSAPGAPKLDFVFTVCDNAAGEVCPVWPGQPMTAHWGFPDPAAFEGTETEKRAFFQEIFRQIRTRIELFISLPMASLDRLSLQRKLDEMG 483
            M+ ++VLFLCTGNSARS+MAEA+LN  G GRFRAYSAGSHP G ++PLTLDTL +AGI   GLRSKSW+EFS P AP LDFVFTVCDNAAGE CP+WPGQP+TAHWGF DPA+F G ETEKRAFFQEIFRQIRTRIELF+SLP+ SLDRLSLQR+LDEMG
Sbjct:    1 MQVRNVLFLCTGNSARSVMAEALLNDLGKGRFRAYSAGSHPTGEINPLTLDTLQLAGIRVDGLRSKSWNEFSGPDAPVLDFVFTVCDNAAGEACPLWPGQPVTAHWGFSDPASFTGIETEKRAFFQEIFRQIRTRIELFVSLPLDSLDRLSLQRRLDEMG 160          
BLAST of mRNA_P-wetherbeei_contig5843.1.1 vs. uniprot
Match: A0A3B9BJU9_9PROT (Protein-tyrosine-phosphatase n=5 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A3B9BJU9_9PROT)

HSP 1 Score: 248 bits (632), Expect = 1.080e-81
Identity = 115/161 (71.43%), Postives = 137/161 (85.09%), Query Frame = 1
Query:    1 SMEAKHVLFLCTGNSARSIMAEAVLNFYGMGRFRAYSAGSHPAGAVHPLTLDTLNIAGISTSGLRSKSWDEFSAPGAPKLDFVFTVCDNAAGEVCPVWPGQPMTAHWGFPDPAAFEGTETEKRAFFQEIFRQIRTRIELFISLPMASLDRLSLQRKLDEMG 483
            S + K+VLFLCTGNSARSIMAEA LNFYG GRF+ +SAGSHP G V+P  + TL IAGI T GLRSKSWDEF+A  AP++DFVFTVCDNAAGE CP+WPGQP++AHWGF DPAAFEG+E E RA FQEIFRQIR RIE+F++LP A L+RL+L+++L E+G
Sbjct:    2 SSDVKNVLFLCTGNSARSIMAEAALNFYGFGRFKGFSAGSHPTGKVNPHAIATLEIAGIPTDGLRSKSWDEFAAADAPQMDFVFTVCDNAAGEQCPIWPGQPISAHWGFADPAAFEGSEAETRAQFQEIFRQIRARIEIFVALPFAQLERLALEKRLREIG 162          
BLAST of mRNA_P-wetherbeei_contig5843.1.1 vs. uniprot
Match: A0A2D8S1I3_9HYPH (Protein-tyrosine-phosphatase n=2 Tax=Hyphomicrobiales TaxID=356 RepID=A0A2D8S1I3_9HYPH)

HSP 1 Score: 241 bits (615), Expect = 3.210e-79
Identity = 109/158 (68.99%), Postives = 136/158 (86.08%), Query Frame = 1
Query:   16 HVLFLCTGNSARSIMAEAVLNFYGMGRFRAYSAGSHPAGAVHPLTLDTLNIAGISTSGLRSKSWDEFSAPGAPKLDFVFTVCDNAAGEVCPVWPGQPMTAHWGFPDPAAFEGTETEKRAFFQEIFRQIRTRIELFISLPMASLDRLSLQRKLDEMGHE 489
            +VLFLCTGNSARSI+AEA +N    GRF+AYSAGSHP G V+P  LD L  AG+  +GLRSKSWDEF+ PGAP++DFVFTVCDNAAGEVCP+WPGQPMTAHW FPDPAAFEG++TEKRA F ++FRQIR R+++F +L + SLD+LSLQ+++DE+G++
Sbjct:    9 NVLFLCTGNSARSILAEAYMNSLPGGRFKAYSAGSHPGGTVNPHALDLLQTAGLPVAGLRSKSWDEFAVPGAPRMDFVFTVCDNAAGEVCPIWPGQPMTAHWPFPDPAAFEGSDTEKRAVFLDVFRQIRARVDIFTNLLIHSLDKLSLQKRIDEIGYD 166          
BLAST of mRNA_P-wetherbeei_contig5843.1.1 vs. uniprot
Match: A0A7C9GEM7_9PROT (Protein-tyrosine-phosphatase n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A7C9GEM7_9PROT)

HSP 1 Score: 240 bits (613), Expect = 6.250e-79
Identity = 112/156 (71.79%), Postives = 131/156 (83.97%), Query Frame = 1
Query:   16 HVLFLCTGNSARSIMAEAVLNFYGMGRFRAYSAGSHPAGAVHPLTLDTLNIAGISTSGLRSKSWDEFSAPGAPKLDFVFTVCDNAAGEVCPVWPGQPMTAHWGFPDPAAFEGTETEKRAFFQEIFRQIRTRIELFISLPMASLDRLSLQRKLDEMG 483
            +VLFLCTGNSARS+MAE++LN  G+GRF+AYSAGSHPAG ++P T+D L         LRSK W+EF+ PGAP+LDFVFTVCD AAGEVCPVWPGQPMTAHWGFPDPA FEG+E E RA F E+FRQI TRI LFI+LPM SLDRLSLQ++LD++G
Sbjct:    8 NVLFLCTGNSARSVMAESILNREGLGRFQAYSAGSHPAGRLNPYTVDLLRRNNYPVEQLRSKDWEEFARPGAPELDFVFTVCDKAAGEVCPVWPGQPMTAHWGFPDPATFEGSEAETRAIFAEVFRQIYTRITLFIALPMQSLDRLSLQKRLDDLG 163          
BLAST of mRNA_P-wetherbeei_contig5843.1.1 vs. uniprot
Match: A7HT30_PARL1 (Protein-tyrosine-phosphatase n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) TaxID=402881 RepID=A7HT30_PARL1)

HSP 1 Score: 239 bits (609), Expect = 2.630e-78
Identity = 112/159 (70.44%), Postives = 133/159 (83.65%), Query Frame = 1
Query:    7 EAKHVLFLCTGNSARSIMAEAVLNFYGMGRFRAYSAGSHPAGAVHPLTLDTLNIAGISTSGLRSKSWDEFSAPGAPKLDFVFTVCDNAAGEVCPVWPGQPMTAHWGFPDPAAFEGTETEKRAFFQEIFRQIRTRIELFISLPMASLDRLSLQRKLDEMG 483
            E  +VLFLCTGNSARSIMAEA LN      F+A+SAGSHP G V+P  +D L  A +ST GLRSKSWDEF+ PGAPK+DFVFTVCDNAAGEVCP+WPGQPMTAHW FPDPAAFEG+ETEKRA F ++FRQIR RI++F +LP+ SLD+LSLQ++L ++G
Sbjct:    6 ETYNVLFLCTGNSARSIMAEAYLNSLPGRPFKAWSAGSHPGGTVNPYAIDVLTTAKLSTEGLRSKSWDEFAVPGAPKMDFVFTVCDNAAGEVCPIWPGQPMTAHWPFPDPAAFEGSETEKRAVFLDVFRQIRARIDIFTNLPLRSLDKLSLQKQLVDLG 164          
BLAST of mRNA_P-wetherbeei_contig5843.1.1 vs. uniprot
Match: A0A3B8XK12_9HYPH (Protein-tyrosine-phosphatase n=2 Tax=Hyphomicrobiales TaxID=356 RepID=A0A3B8XK12_9HYPH)

HSP 1 Score: 238 bits (606), Expect = 7.520e-78
Identity = 110/161 (68.32%), Postives = 133/161 (82.61%), Query Frame = 1
Query:    7 EAKHVLFLCTGNSARSIMAEAVLNFYGMGRFRAYSAGSHPAGAVHPLTLDTLNIAGISTSGLRSKSWDEFSAPGAPKLDFVFTVCDNAAGEVCPVWPGQPMTAHWGFPDPAAFEGTETEKRAFFQEIFRQIRTRIELFISLPMASLDRLSLQRKLDEMGHE 489
            E  +VLFLCTGNSARSIMAEA +N     RF+AYSAGSHP G V+P  LD L  A I   GLRSKSWDEF+APGAPK++FVFTVCDNAAGEVCP+WPGQPMTAHW F DPAAFEG++ EKRA F ++FRQIR RI++F +LP+ SLD+L+LQ+++DE+G +
Sbjct:    6 ETWNVLFLCTGNSARSIMAEAYMNSLPEKRFKAYSAGSHPGGTVNPYALDVLRTARIPVEGLRSKSWDEFAAPGAPKMNFVFTVCDNAAGEVCPIWPGQPMTAHWPFADPAAFEGSDAEKRAIFLDVFRQIRARIDIFTNLPLRSLDKLALQKRIDEIGRD 166          
BLAST of mRNA_P-wetherbeei_contig5843.1.1 vs. uniprot
Match: A0A7C9QWH6_9PROT (Protein-tyrosine-phosphatase n=1 Tax=Magnetospirillum aberrantis SpK TaxID=908842 RepID=A0A7C9QWH6_9PROT)

HSP 1 Score: 234 bits (598), Expect = 1.090e-76
Identity = 109/158 (68.99%), Postives = 132/158 (83.54%), Query Frame = 1
Query:   16 HVLFLCTGNSARSIMAEAVLNFYGMGRFRAYSAGSHPAGAVHPLTLDTLNIAGISTSGLRSKSWDEFSAPGAPKLDFVFTVCDNAAGEVCPVWPGQPMTAHWGFPDPAAFEGTETEKRAFFQEIFRQIRTRIELFISLPMASLDRLSLQRKLDEMGHE 489
            +VLFLCTGNSARS++AE +L   G GRFR +SAGSHPAGAV+PLTL TL +AG+ST  LRSKSWDEF+ PGAP +DFVFTVCDNAAGEVCPVWPGQP++AHWGF DPAA  G+E E+ A F E+FRQI  R+  F +LP+ASLDRL+L+R++D +G E
Sbjct:    7 NVLFLCTGNSARSVLAEVLLATRGEGRFRTFSAGSHPAGAVNPLTLRTLELAGLSTENLRSKSWDEFAVPGAPTMDFVFTVCDNAAGEVCPVWPGQPISAHWGFEDPAAATGSEAERLAVFAEVFRQIDRRVSAFAALPIASLDRLALKREVDRLGQE 164          
BLAST of mRNA_P-wetherbeei_contig5843.1.1 vs. uniprot
Match: A0A8J7SZG6_9PROT (Protein-tyrosine-phosphatase n=1 Tax=Candidatus Odyssella sp. TaxID=2589116 RepID=A0A8J7SZG6_9PROT)

HSP 1 Score: 234 bits (598), Expect = 1.160e-76
Identity = 112/159 (70.44%), Postives = 129/159 (81.13%), Query Frame = 1
Query:    7 EAKHVLFLCTGNSARSIMAEAVLNFYGMGRFRAYSAGSHPAGAVHPLTLDTLNIAGISTSGLRSKSWDEFSAPGAPKLDFVFTVCDNAAGEVCPVWPGQPMTAHWGFPDPAAFEGTETEKRAFFQEIFRQIRTRIELFISLPMASLDRLSLQRKLDEMG 483
            +A +VLF+CTGNSARSI+AEA+LN  G GRFRA+SAGSHP GAVHP  LD L       + LRSKSWD F APGAP LDF FTVCDNAAGEVCPVWPGQPMTAHWG PDPAA EG+E EKRA F E +R + +RI +F SLP+A+LDRLSLQ++LDE+G
Sbjct:    4 KAFNVLFICTGNSARSILAEAILNREGRGRFRAFSAGSHPKGAVHPYALDLLRRTNHPVAELRSKSWDAFVAPGAPPLDFAFTVCDNAAGEVCPVWPGQPMTAHWGLPDPAAAEGSEAEKRAAFAEAYRMLASRISIFASLPLAALDRLSLQKRLDEIG 162          
BLAST of mRNA_P-wetherbeei_contig5843.1.1 vs. uniprot
Match: A0A081B8C3_9HYPH (Protein-tyrosine-phosphatase n=1 Tax=Tepidicaulis marinus TaxID=1333998 RepID=A0A081B8C3_9HYPH)

HSP 1 Score: 234 bits (596), Expect = 2.590e-76
Identity = 107/156 (68.59%), Postives = 128/156 (82.05%), Query Frame = 1
Query:   16 HVLFLCTGNSARSIMAEAVLNFYGMGRFRAYSAGSHPAGAVHPLTLDTLNIAGISTSGLRSKSWDEFSAPGAPKLDFVFTVCDNAAGEVCPVWPGQPMTAHWGFPDPAAFEGTETEKRAFFQEIFRQIRTRIELFISLPMASLDRLSLQRKLDEMG 483
            +VLFLCTGNS RSI+AEA LN     RF+AYSAGSHP G VHPL L+TL +AG+ T+GL SK W+ F  PGAP LDFV T CD+AA EVCP+WPGQPM AHW FPDP AF+GTETE +A F ++FRQIRTRI++F +LP+ASLD+LSLQ+KLDE+G
Sbjct:    9 NVLFLCTGNSCRSILAEAYLNHAAGDRFKAYSAGSHPKGQVHPLALETLRVAGLPTTGLSSKGWEAFEGPGAPALDFVITTCDSAANEVCPIWPGQPMNAHWPFPDPDAFQGTETETKAHFLDVFRQIRTRIDIFANLPLASLDKLSLQKKLDEIG 164          
BLAST of mRNA_P-wetherbeei_contig5843.1.1 vs. uniprot
Match: A0A2D4VI92_9HYPH (Protein-tyrosine-phosphatase n=2 Tax=Parvibaculum TaxID=256616 RepID=A0A2D4VI92_9HYPH)

HSP 1 Score: 232 bits (591), Expect = 1.550e-75
Identity = 109/159 (68.55%), Postives = 129/159 (81.13%), Query Frame = 1
Query:    7 EAKHVLFLCTGNSARSIMAEAVLNFYGMGRFRAYSAGSHPAGAVHPLTLDTLNIAGISTSGLRSKSWDEFSAPGAPKLDFVFTVCDNAAGEVCPVWPGQPMTAHWGFPDPAAFEGTETEKRAFFQEIFRQIRTRIELFISLPMASLDRLSLQRKLDEMG 483
            E  +VLFLCTGNS RS+MAEA +N      F AYSAGS P G V+P  ++TL  A + T GLRSKSWDEF+ PGAP ++FVFTVCDNAAGEVCP+WPGQPMTAHW FPDPA FEGTETE RA F E+FRQIRTRI+L ++LP+ SLDRL+L++KLD+MG
Sbjct:    8 EKYNVLFLCTGNSCRSVMAEAYMNSLPGTPFHAYSAGSMPTGEVNPYAIETLQYAKVPTDGLRSKSWDEFAEPGAPAMNFVFTVCDNAAGEVCPIWPGQPMTAHWPFPDPAKFEGTETETRAHFLEVFRQIRTRIDLLVALPITSLDRLALKKKLDDMG 166          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig5843.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A3C0TXQ3_9PROT3.570e-9079.38Protein-tyrosine-phosphatase n=1 Tax=Alphaproteoba... [more]
A0A3B9BJU9_9PROT1.080e-8171.43Protein-tyrosine-phosphatase n=5 Tax=Alphaproteoba... [more]
A0A2D8S1I3_9HYPH3.210e-7968.99Protein-tyrosine-phosphatase n=2 Tax=Hyphomicrobia... [more]
A0A7C9GEM7_9PROT6.250e-7971.79Protein-tyrosine-phosphatase n=1 Tax=Alphaproteoba... [more]
A7HT30_PARL12.630e-7870.44Protein-tyrosine-phosphatase n=1 Tax=Parvibaculum ... [more]
A0A3B8XK12_9HYPH7.520e-7868.32Protein-tyrosine-phosphatase n=2 Tax=Hyphomicrobia... [more]
A0A7C9QWH6_9PROT1.090e-7668.99Protein-tyrosine-phosphatase n=1 Tax=Magnetospiril... [more]
A0A8J7SZG6_9PROT1.160e-7670.44Protein-tyrosine-phosphatase n=1 Tax=Candidatus Od... [more]
A0A081B8C3_9HYPH2.590e-7668.59Protein-tyrosine-phosphatase n=1 Tax=Tepidicaulis ... [more]
A0A2D4VI92_9HYPH1.550e-7568.55Protein-tyrosine-phosphatase n=2 Tax=Parvibaculum ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig5843contigP-wetherbeei_contig5843:652..1143 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog402881.Plav_1443
PFAMsHTH_20,LMWPc
Model size492
Max annot lvl28211|Alphaproteobacteria
KEGG koko:K03741,ko:K03892
Hectar predicted targeting categoryother localisation
Exons1
Evalue2.92e-79
EggNOG OGsCOG0394@1|root,COG0394@2|Bacteria,1MWYQ@1224|Proteobacteria,2TU1U@28211|Alphaproteobacteria,1JP2Y@119043|Rhodobiaceae
EC1.20.4.1
DescriptionLow molecular weight phosphatase family
Cds size489
COG categoryT
BRITEko00000,ko01000,ko03000
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186865.3730373-UTR-P-wetherbeei_contig5843:651..6541683186865.3730373-UTR-P-wetherbeei_contig5843:651..654Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig5843 652..654 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186865.3819876-CDS-P-wetherbeei_contig5843:654..11431683186865.3819876-CDS-P-wetherbeei_contig5843:654..1143Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5843 655..1143 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig5843.1.1prot_P-wetherbeei_contig5843.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig5843 655..1143 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig5843.1.1

>prot_P-wetherbeei_contig5843.1.1 ID=prot_P-wetherbeei_contig5843.1.1|Name=mRNA_P-wetherbeei_contig5843.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=163bp
MEAKHVLFLCTGNSARSIMAEAVLNFYGMGRFRAYSAGSHPAGAVHPLTL
DTLNIAGISTSGLRSKSWDEFSAPGAPKLDFVFTVCDNAAGEVCPVWPGQ
PMTAHWGFPDPAAFEGTETEKRAFFQEIFRQIRTRIELFISLPMASLDRL
SLQRKLDEMGHE*
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mRNA from alignment at P-wetherbeei_contig5843:652..1143+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig5843.1.1 ID=mRNA_P-wetherbeei_contig5843.1.1|Name=mRNA_P-wetherbeei_contig5843.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=492bp|location=Sequence derived from alignment at P-wetherbeei_contig5843:652..1143+ (Phaeothamnion wetherbeei SAG_119_79)
AGTATGGAAGCAAAACATGTGCTGTTTTTGTGCACGGGAAATTCGGCCCG CAGCATCATGGCGGAGGCAGTGCTCAATTTTTACGGCATGGGCCGCTTCA GGGCCTATAGCGCGGGCAGCCATCCGGCGGGGGCGGTTCATCCGCTAACC CTGGATACGCTGAATATCGCCGGGATCAGCACCAGCGGACTGCGCAGCAA ATCATGGGATGAATTTTCCGCACCGGGCGCGCCGAAGCTGGATTTTGTTT TTACCGTCTGTGACAATGCCGCAGGCGAGGTTTGCCCGGTCTGGCCGGGA CAGCCAATGACCGCCCATTGGGGCTTTCCCGATCCCGCCGCCTTCGAAGG CACGGAAACGGAAAAGCGCGCCTTCTTTCAGGAAATTTTCCGGCAAATCC GTACACGAATTGAATTGTTCATCAGCCTGCCCATGGCCAGCCTTGACAGA CTGTCGTTGCAGCGTAAGCTGGACGAAATGGGCCATGAATAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig5843:652..1143+

>mRNA_P-wetherbeei_contig5843.1.1 ID=mRNA_P-wetherbeei_contig5843.1.1|Name=mRNA_P-wetherbeei_contig5843.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=489bp|location=Sequence derived from alignment at P-wetherbeei_contig5843:652..1143+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGAAGCAAAACATGTGCTGTTTTTGTGCACGGGAAATTCGGCCCGCAG
CATCATGGCGGAGGCAGTGCTCAATTTTTACGGCATGGGCCGCTTCAGGG
CCTATAGCGCGGGCAGCCATCCGGCGGGGGCGGTTCATCCGCTAACCCTG
GATACGCTGAATATCGCCGGGATCAGCACCAGCGGACTGCGCAGCAAATC
ATGGGATGAATTTTCCGCACCGGGCGCGCCGAAGCTGGATTTTGTTTTTA
CCGTCTGTGACAATGCCGCAGGCGAGGTTTGCCCGGTCTGGCCGGGACAG
CCAATGACCGCCCATTGGGGCTTTCCCGATCCCGCCGCCTTCGAAGGCAC
GGAAACGGAAAAGCGCGCCTTCTTTCAGGAAATTTTCCGGCAAATCCGTA
CACGAATTGAATTGTTCATCAGCCTGCCCATGGCCAGCCTTGACAGACTG
TCGTTGCAGCGTAAGCTGGACGAAATGGGCCATGAATAG
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