mRNA_P-wetherbeei_contig58429.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig58429.1.1
Unique NamemRNA_P-wetherbeei_contig58429.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig58429.1.1 vs. uniprot
Match: A0A6H5KFC5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFC5_9PHAE)

HSP 1 Score: 57.4 bits (137), Expect = 4.930e-9
Identity = 26/35 (74.29%), Postives = 28/35 (80.00%), Query Frame = 1 
Query:    1 AMMRTDVQSGLCKRSDAKGTNPTTGVDTRDSLLCD 105
            A++R DV   LC R DAKGTNPTTG DTRDSLLCD
Sbjct:  145 ALIRKDVAKILCARPDAKGTNPTTGTDTRDSLLCD 179
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BLAST of mRNA_P-wetherbeei_contig58429.1.1 vs. uniprot
Match: D7FZR3_ECTSI (Pentapeptide repeat n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZR3_ECTSI)

HSP 1 Score: 57.4 bits (137), Expect = 9.200e-9
Identity = 26/35 (74.29%), Postives = 28/35 (80.00%), Query Frame = 1 
Query:    1 AMMRTDVQSGLCKRSDAKGTNPTTGVDTRDSLLCD 105
            A++R DV   LC R DAKGTNPTTG DTRDSLLCD
Sbjct:  202 ALIRKDVAKILCARPDAKGTNPTTGTDTRDSLLCD 236
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BLAST of mRNA_P-wetherbeei_contig58429.1.1 vs. uniprot
Match: A0A7S2SQY3_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SQY3_9STRA)

HSP 1 Score: 53.1 bits (126), Expect = 3.360e-7
Identity = 23/34 (67.65%), Postives = 27/34 (79.41%), Query Frame = 1 
Query:    1 AMMRTDVQSGLCKRSDAKGTNPTTGVDTRDSLLC 102
            ++MR  +Q  LC+R DAKGTNP TGVDTRDSL C
Sbjct:  204 SIMRETMQKKLCERPDAKGTNPKTGVDTRDSLFC 237
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BLAST of mRNA_P-wetherbeei_contig58429.1.1 vs. uniprot
Match: A0A7S3CG05_9CHLO (Hypothetical protein n=1 Tax=Chloropicon roscoffensis TaxID=1461544 RepID=A0A7S3CG05_9CHLO)

HSP 1 Score: 51.2 bits (121), Expect = 5.660e-7
Identity = 21/33 (63.64%), Postives = 26/33 (78.79%), Query Frame = 1 
Query:    4 MMRTDVQSGLCKRSDAKGTNPTTGVDTRDSLLC 102
            ++R DVQ  LCK+  AKGTNP TG DTR+SL+C
Sbjct:  104 VLRKDVQQFLCKKPSAKGTNPVTGADTRESLMC 136
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BLAST of mRNA_P-wetherbeei_contig58429.1.1 vs. uniprot
Match: A0A0D2NRR1_9CHLO (Thylakoid lumenal protein 1 n=1 Tax=Monoraphidium neglectum TaxID=145388 RepID=A0A0D2NRR1_9CHLO)

HSP 1 Score: 50.8 bits (120), Expect = 1.590e-6
Identity = 23/34 (67.65%), Postives = 26/34 (76.47%), Query Frame = 1 
Query:    4 MMRTDVQSGLCKRSDAKGTNPTTGVDTRDSLLCD 105
            ++R DVQ  LC    A GTNPTTGVDTR+SLLCD
Sbjct:  152 LLRKDVQKYLCGLPTATGTNPTTGVDTRESLLCD 185
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BLAST of mRNA_P-wetherbeei_contig58429.1.1 vs. uniprot
Match: A0A7S3CEA8_9CHLO (Hypothetical protein n=1 Tax=Chloropicon roscoffensis TaxID=1461544 RepID=A0A7S3CEA8_9CHLO)

HSP 1 Score: 51.2 bits (121), Expect = 1.690e-6
Identity = 21/33 (63.64%), Postives = 26/33 (78.79%), Query Frame = 1 
Query:    4 MMRTDVQSGLCKRSDAKGTNPTTGVDTRDSLLC 102
            ++R DVQ  LCK+  AKGTNP TG DTR+SL+C
Sbjct:  204 VLRKDVQQFLCKKPSAKGTNPVTGADTRESLMC 236
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BLAST of mRNA_P-wetherbeei_contig58429.1.1 vs. uniprot
Match: A0A0G4H1V2_9ALVE (Uncharacterized protein n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4H1V2_9ALVE)

HSP 1 Score: 51.2 bits (121), Expect = 1.860e-6
Identity = 23/34 (67.65%), Postives = 24/34 (70.59%), Query Frame = 1 
Query:    1 AMMRTDVQSGLCKRSDAKGTNPTTGVDTRDSLLC 102
            A +R D    LCKR DAKG NP TGV TRDSLLC
Sbjct:  223 ASLRPDYLEALCKRPDAKGVNPKTGVSTRDSLLC 256
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BLAST of mRNA_P-wetherbeei_contig58429.1.1 vs. uniprot
Match: A0A7S4WIT9_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4WIT9_9STRA)

HSP 1 Score: 50.4 bits (119), Expect = 2.790e-6
Identity = 22/33 (66.67%), Postives = 25/33 (75.76%), Query Frame = 1 
Query:    4 MMRTDVQSGLCKRSDAKGTNPTTGVDTRDSLLC 102
            M+R D Q  LC    AKGTNPTTGVDTR+SL+C
Sbjct:  178 MLRRDQQKYLCAHPTAKGTNPTTGVDTRESLMC 210
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BLAST of mRNA_P-wetherbeei_contig58429.1.1 vs. uniprot
Match: A0A7S4T3W9_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4T3W9_9STRA)

HSP 1 Score: 50.4 bits (119), Expect = 3.660e-6
Identity = 22/33 (66.67%), Postives = 25/33 (75.76%), Query Frame = 1 
Query:    4 MMRTDVQSGLCKRSDAKGTNPTTGVDTRDSLLC 102
            M+R D Q  LC    AKGTNPTTGVDTR+SL+C
Sbjct:  236 MLRRDQQKYLCAHPTAKGTNPTTGVDTRESLMC 268
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BLAST of mRNA_P-wetherbeei_contig58429.1.1 vs. uniprot
Match: A0A0G4GX94_VITBC (Uncharacterized protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4GX94_VITBC)

HSP 1 Score: 49.7 bits (117), Expect = 4.190e-6
Identity = 22/34 (64.71%), Postives = 26/34 (76.47%), Query Frame = 1 
Query:    1 AMMRTDVQSGLCKRSDAKGTNPTTGVDTRDSLLC 102
            A+MR  V   LC+R DAKG NP+TGVDTR+SL C
Sbjct:  149 ALMRQGVNRMLCEREDAKGVNPSTGVDTRESLNC 182
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig58429.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KFC5_9PHAE4.930e-974.29Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FZR3_ECTSI9.200e-974.29Pentapeptide repeat n=1 Tax=Ectocarpus siliculosus... [more]
A0A7S2SQY3_9STRA3.360e-767.65Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S3CG05_9CHLO5.660e-763.64Hypothetical protein n=1 Tax=Chloropicon roscoffen... [more]
A0A0D2NRR1_9CHLO1.590e-667.65Thylakoid lumenal protein 1 n=1 Tax=Monoraphidium ... [more]
A0A7S3CEA8_9CHLO1.690e-663.64Hypothetical protein n=1 Tax=Chloropicon roscoffen... [more]
A0A0G4H1V2_9ALVE1.860e-667.65Uncharacterized protein n=1 Tax=Chromera velia CCM... [more]
A0A7S4WIT9_9STRA2.790e-666.67Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A7S4T3W9_9STRA3.660e-666.67Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A0G4GX94_VITBC4.190e-664.71Uncharacterized protein n=1 Tax=Vitrella brassicaf... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig58429contigP-wetherbeei_contig58429:396..503 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FZR3
PFAMsPentapeptide
Model size108
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Evalue5.35e-09
EggNOG OGs2CYH2@1|root,2S4CZ@2759|Eukaryota
DescriptionPentapeptide repeats (8 copies)
Cds size105
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186865.3370206-CDS-P-wetherbeei_contig58429:395..5001683186865.3370206-CDS-P-wetherbeei_contig58429:395..500Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig58429 396..500 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186865.347422-UTR-P-wetherbeei_contig58429:500..5031683186865.347422-UTR-P-wetherbeei_contig58429:500..503Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig58429 501..503 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig58429.1.1prot_P-wetherbeei_contig58429.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig58429 396..500 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig58429.1.1

>prot_P-wetherbeei_contig58429.1.1 ID=prot_P-wetherbeei_contig58429.1.1|Name=mRNA_P-wetherbeei_contig58429.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=35bp
MMRTDVQSGLCKRSDAKGTNPTTGVDTRDSLLCD*
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mRNA from alignment at P-wetherbeei_contig58429:396..503-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig58429.1.1 ID=mRNA_P-wetherbeei_contig58429.1.1|Name=mRNA_P-wetherbeei_contig58429.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=108bp|location=Sequence derived from alignment at P-wetherbeei_contig58429:396..503- (Phaeothamnion wetherbeei SAG_119_79)
GCCATGATGCGGACGGATGTGCAGTCGGGCCTCTGCAAGCGGTCCGACGC
AAAGGGCACAAACCCCACCACCGGTGTCGATACGCGCGACAGCCTGCTCT
GCGACTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig58429:396..503-

>mRNA_P-wetherbeei_contig58429.1.1 ID=mRNA_P-wetherbeei_contig58429.1.1|Name=mRNA_P-wetherbeei_contig58429.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=105bp|location=Sequence derived from alignment at P-wetherbeei_contig58429:396..503- (Phaeothamnion wetherbeei SAG_119_79)
ATGATGCGGACGGATGTGCAGTCGGGCCTCTGCAAGCGGTCCGACGCAAA
GGGCACAAACCCCACCACCGGTGTCGATACGCGCGACAGCCTGCTCTGCG
ACTGA
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