mRNA_P-wetherbeei_contig5841.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig5841.1.1
Unique NamemRNA_P-wetherbeei_contig5841.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig5841.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig5841contigP-wetherbeei_contig5841:1835..3636 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1802
Hectar predicted targeting categoryother localisation
Exons1
Cds size1119
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186865.2338223-UTR-P-wetherbeei_contig5841:1834..18911683186865.2338223-UTR-P-wetherbeei_contig5841:1834..1891Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig5841 1835..1891 +
1683186865.2505634-UTR-P-wetherbeei_contig5841:3010..36361683186865.2505634-UTR-P-wetherbeei_contig5841:3010..3636Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig5841 3011..3636 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186865.2426798-CDS-P-wetherbeei_contig5841:1891..30101683186865.2426798-CDS-P-wetherbeei_contig5841:1891..3010Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5841 1892..3010 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig5841.1.1prot_P-wetherbeei_contig5841.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig5841 1892..3010 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig5841.1.1

>prot_P-wetherbeei_contig5841.1.1 ID=prot_P-wetherbeei_contig5841.1.1|Name=mRNA_P-wetherbeei_contig5841.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=373bp
MPHGRSETAHQAVAISQEPRAVSAYQNRLTADVDPEQAFRRGTTFTLRDV
RTSQAGAVQLTVTLDNNLDVMSYGGGYDGWSQDMDMERSVDGSFRRMAAD
ILRTAGVHRGDSAEISMHDTTGVLAHDVFTGFHDYGQQGITAMAEALGDR
IKAMSSYRDTPWSLGPHIKFFVTVVRGVHGGDVDGVSSKGVVIIRGHENC
VGKAAFLGAMYNAYNDMRGYKTEEVLEAVGLNPGEDPIAWLSAAQRWEAH
CRITGEARRTGEPRSQRRQEGVAEMPESGGRSGCRMVGDVRRRHRRTHVH
RRSHGRPARSHGAGRHRQEPERRRARGSRPADRADAPLGLRRQLHLAARE
RGRIARRHHQSQADDRRQHQVF*
back to top

mRNA from alignment at P-wetherbeei_contig5841:1835..3636+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig5841.1.1 ID=mRNA_P-wetherbeei_contig5841.1.1|Name=mRNA_P-wetherbeei_contig5841.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1802bp|location=Sequence derived from alignment at P-wetherbeei_contig5841:1835..3636+ (Phaeothamnion wetherbeei SAG_119_79)
CGCTTATTACCCGCCCTCAAATCTGGTTCCGTATATTTTCTATCTAACAG
ATAAGAGATGCCTCACGGGCGATCGGAGACGGCCCATCAGGCGGTGGCGA
TCTCGCAGGAGCCGCGAGCCGTCAGCGCGTACCAGAACAGGTTGACTGCC
GATGTCGACCCCGAGCAAGCATTCCGCAGGGGCACGACCTTCACCCTGCG
CGACGTCCGAACCAGTCAGGCGGGGGCGGTGCAGCTCACGGTGACGCTCG
ACAACAACCTCGATGTCATGTCGTACGGAGGCGGGTACGATGGCTGGAGC
CAGGACATGGACATGGAGCGGAGCGTTGACGGCAGCTTCCGTCGCATGGC
CGCGGACATCTTGCGCACGGCAGGCGTTCATCGAGGTGACAGCGCGGAGA
TATCGATGCACGACACCACGGGCGTGCTGGCCCACGACGTGTTCACTGGA
TTCCACGACTACGGCCAACAAGGAATCACGGCAATGGCCGAGGCGCTAGG
CGATCGCATCAAGGCCATGTCCTCGTACCGCGACACTCCTTGGTCGCTCG
GACCGCACATCAAATTCTTCGTGACGGTGGTGCGTGGTGTTCACGGCGGC
GATGTTGATGGCGTCTCGTCGAAAGGCGTCGTGATCATCCGTGGCCATGA
GAACTGCGTGGGCAAGGCAGCTTTCCTCGGAGCCATGTACAACGCGTACA
ACGACATGCGAGGCTACAAGACGGAAGAGGTCCTCGAGGCCGTCGGGCTC
AACCCCGGCGAAGATCCCATCGCATGGCTGAGCGCTGCACAGAGGTGGGA
GGCCCACTGCCGCATAACTGGCGAAGCTCGCCGCACGGGGGAGCCTCGCT
CCCAGCGTCGTCAAGAAGGTGTGGCAGAAATGCCTGAGTCGGGTGGACGT
TCTGGCTGCCGAATGGTTGGGGATGTTCGACGTCGACATCGACGAACTCA
CGTCCATCGACGATCTCACGGCCGTCCTGCCCGAAGCCACGGGGCTGGGC
GTCATCGTCAGGAGCCGGAACGGAGGAGAGCCCGTGGTTCGCGCCCAGCC
GACCGAGCCGACGCGCCACTCGGACTTCGAAGGCAGCTACATCTGGCTGC
TCGAGAGCGCGGACGGATCGCACGTCGACATCATCAAAGCCAAGCCGACG
ATCGCCGCCAACACCAAGTGTTCTGACAAGGTGCTTAGCATCGTCGAGTC
TACAGGGACGCGTTTGGACGCTTTGTTCCTCGGCTACATGAACAAGGCGG
CCGACGCTTCCAAGAGGTGCTCTGAGGAGGAGGTATCTGAGGCGACGGGC
TTCCGCCTCAAAGCATCGACGAACGCGGGCACGAGAATCTCCAACATGAT
CTCATGGGCCAAGGCGACGCTGGAGACCGTGTTTGGCGCTCCTTACTCGG
CGATGGAAGACGCGAACGACCCCGAGGACTACGTGGAAGTCGACGGACGC
AACGTCCTTCGCTCCCAAGTCGGTTCGCCAAAACGTTCTCGCTCACCTGT
CAACAACAGCCCCCAACGGAGCCGCGCCGCAGCCGACTACATCTGCCGAG
CCAAGAACAACGTCGAAGAAGCCTCAGCGGCATGGCAGGCTTCCATTGGC
TTGGGGCCGGAAGATGAGAACTCCGACGACCTCTACAAACTCTTCGCAGA
ACTCACGGGCTTTGGTGTCAAGCTTTTCGATCGCGCCAACGGCACCTTGA
CGACGGCTTCACGCCCCACGGGCTCCAACTCCAAAATCGACATCAGAGGA
AAGGAACCTTTCTTACTATTCATAAATCATCAATAATTTATGCGAGGCCC
CT
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig5841:1835..3636+

>mRNA_P-wetherbeei_contig5841.1.1 ID=mRNA_P-wetherbeei_contig5841.1.1|Name=mRNA_P-wetherbeei_contig5841.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1119bp|location=Sequence derived from alignment at P-wetherbeei_contig5841:1835..3636+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCCTCACGGGCGATCGGAGACGGCCCATCAGGCGGTGGCGATCTCGCA
GGAGCCGCGAGCCGTCAGCGCGTACCAGAACAGGTTGACTGCCGATGTCG
ACCCCGAGCAAGCATTCCGCAGGGGCACGACCTTCACCCTGCGCGACGTC
CGAACCAGTCAGGCGGGGGCGGTGCAGCTCACGGTGACGCTCGACAACAA
CCTCGATGTCATGTCGTACGGAGGCGGGTACGATGGCTGGAGCCAGGACA
TGGACATGGAGCGGAGCGTTGACGGCAGCTTCCGTCGCATGGCCGCGGAC
ATCTTGCGCACGGCAGGCGTTCATCGAGGTGACAGCGCGGAGATATCGAT
GCACGACACCACGGGCGTGCTGGCCCACGACGTGTTCACTGGATTCCACG
ACTACGGCCAACAAGGAATCACGGCAATGGCCGAGGCGCTAGGCGATCGC
ATCAAGGCCATGTCCTCGTACCGCGACACTCCTTGGTCGCTCGGACCGCA
CATCAAATTCTTCGTGACGGTGGTGCGTGGTGTTCACGGCGGCGATGTTG
ATGGCGTCTCGTCGAAAGGCGTCGTGATCATCCGTGGCCATGAGAACTGC
GTGGGCAAGGCAGCTTTCCTCGGAGCCATGTACAACGCGTACAACGACAT
GCGAGGCTACAAGACGGAAGAGGTCCTCGAGGCCGTCGGGCTCAACCCCG
GCGAAGATCCCATCGCATGGCTGAGCGCTGCACAGAGGTGGGAGGCCCAC
TGCCGCATAACTGGCGAAGCTCGCCGCACGGGGGAGCCTCGCTCCCAGCG
TCGTCAAGAAGGTGTGGCAGAAATGCCTGAGTCGGGTGGACGTTCTGGCT
GCCGAATGGTTGGGGATGTTCGACGTCGACATCGACGAACTCACGTCCAT
CGACGATCTCACGGCCGTCCTGCCCGAAGCCACGGGGCTGGGCGTCATCG
TCAGGAGCCGGAACGGAGGAGAGCCCGTGGTTCGCGCCCAGCCGACCGAG
CCGACGCGCCACTCGGACTTCGAAGGCAGCTACATCTGGCTGCTCGAGAG
CGCGGACGGATCGCACGTCGACATCATCAAAGCCAAGCCGACGATCGCCG
CCAACACCAAGTGTTCTGA
back to top