mRNA_P-wetherbeei_contig5835.4.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig5835.4.1
Unique NamemRNA_P-wetherbeei_contig5835.4.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig5835.4.1 vs. uniprot
Match: A0A7X8XKG3_9BURK (OmpH family outer membrane protein n=1 Tax=Burkholderiales bacterium TaxID=1891238 RepID=A0A7X8XKG3_9BURK)

HSP 1 Score: 68.6 bits (166), Expect = 3.710e-12
Identity = 35/124 (28.23%), Postives = 72/124 (58.06%), Query Frame = 1 
Query:    1 LRVAKIDTTRIMADMKEYKDLQSEMVKDKQAYYATLPKDPRSIDKAKADQMRVN----AQAKQGEWQKKIADMTQTAIKQITDQTAEVAKARNLDMVVVDTPYSHTVQFIDGPDVSTDVILKLK 360
            + V  ++T RI+ +  +Y DL   +++++ A Y+ +P + + +  A+  Q++      A  + G + K + +  Q     I +   EVA+A+ +DMV++DTPY  TV +  G +++TD++LK++
Sbjct:   25 MTVGVVNTARIVQENPKYLDLNVLLMQERDAVYSQIPANVQQLSDAEKRQLQEKLAKEASERSGRFDKLVREFMQKLQSDIQESAGEVARAKGIDMVIIDTPYHPTVHYNSGENITTDILLKMR 148
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig5835.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A7X8XKG3_9BURK3.710e-1228.23OmpH family outer membrane protein n=1 Tax=Burkhol... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig5835contigP-wetherbeei_contig5835:2934..3299 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size366
Hectar predicted targeting categoryother localisation
Exons1
Cds size366
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186864.4039404-CDS-P-wetherbeei_contig5835:2933..32991683186864.4039404-CDS-P-wetherbeei_contig5835:2933..3299Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5835 2934..3299 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig5835.4.1prot_P-wetherbeei_contig5835.4.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig5835 2934..3299 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig5835.4.1

>prot_P-wetherbeei_contig5835.4.1 ID=prot_P-wetherbeei_contig5835.4.1|Name=mRNA_P-wetherbeei_contig5835.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=122bp
LRVAKIDTTRIMADMKEYKDLQSEMVKDKQAYYATLPKDPRSIDKAKADQ
MRVNAQAKQGEWQKKIADMTQTAIKQITDQTAEVAKARNLDMVVVDTPYS
HTVQFIDGPDVSTDVILKLKK*
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mRNA from alignment at P-wetherbeei_contig5835:2934..3299+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig5835.4.1 ID=mRNA_P-wetherbeei_contig5835.4.1|Name=mRNA_P-wetherbeei_contig5835.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=366bp|location=Sequence derived from alignment at P-wetherbeei_contig5835:2934..3299+ (Phaeothamnion wetherbeei SAG_119_79)
CTGCGCGTCGCCAAAATCGACACGACTCGCATCATGGCCGATATGAAAGA
ATACAAAGATCTCCAATCGGAAATGGTCAAGGACAAACAGGCCTATTATG
CCACTCTGCCCAAAGACCCGCGCAGTATCGACAAGGCCAAGGCAGACCAG
ATGCGCGTCAACGCTCAGGCCAAGCAGGGCGAATGGCAAAAGAAGATTGC
CGATATGACCCAGACGGCCATCAAGCAGATCACGGACCAGACCGCCGAAG
TGGCGAAGGCTCGCAACCTCGACATGGTGGTCGTCGATACCCCCTACTCG
CATACGGTTCAGTTCATCGATGGGCCTGACGTCAGCACCGACGTCATTCT
CAAGCTCAAGAAGTAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig5835:2934..3299+

>mRNA_P-wetherbeei_contig5835.4.1 ID=mRNA_P-wetherbeei_contig5835.4.1|Name=mRNA_P-wetherbeei_contig5835.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=366bp|location=Sequence derived from alignment at P-wetherbeei_contig5835:2934..3299+ (Phaeothamnion wetherbeei SAG_119_79)
CTGCGCGTCGCCAAAATCGACACGACTCGCATCATGGCCGATATGAAAGA
ATACAAAGATCTCCAATCGGAAATGGTCAAGGACAAACAGGCCTATTATG
CCACTCTGCCCAAAGACCCGCGCAGTATCGACAAGGCCAAGGCAGACCAG
ATGCGCGTCAACGCTCAGGCCAAGCAGGGCGAATGGCAAAAGAAGATTGC
CGATATGACCCAGACGGCCATCAAGCAGATCACGGACCAGACCGCCGAAG
TGGCGAAGGCTCGCAACCTCGACATGGTGGTCGTCGATACCCCCTACTCG
CATACGGTTCAGTTCATCGATGGGCCTGACGTCAGCACCGACGTCATTCT
CAAGCTCAAGAAGTAG
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