mRNA_P-wetherbeei_contig58331.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig58331.1.1
Unique NamemRNA_P-wetherbeei_contig58331.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig58331.1.1 vs. uniprot
Match: A0A127F4C0_9HYPH (Carbon monoxide dehydrogenase n=1 Tax=Rhodoplanes sp. Z2-YC6860 TaxID=674703 RepID=A0A127F4C0_9HYPH)

HSP 1 Score: 302 bits (773), Expect = 1.100e-95
Identity = 148/167 (88.62%), Postives = 155/167 (92.81%), Query Frame = 1
Query:    1 AFDLGKLPKGMEPGLYETATYRATSGNFPNGAHVCEVEIDPETGVIRLVGYWVVDDVGTVINPMLVKGQIMGGIAQGMGQVLMEDKTYDPQTGQVIAGSFMDYAMPRAENFCPVVIEDNPVPTPTNPLGVKGAGEAGTVGSLSAGTNAIVDALSVLGIRHIDTPCTP 501
            AF + KLP GMEPGLYETATYRATSGNFPNGAHVCEVEIDPETGV  +V Y VVDDVGTVINPMLVKGQIMGGIAQG+GQVLMEDK YDPQTGQVI+GSFMDYAMPRAE+FC +V+EDNPVPTPTNPLGVKGAGEAGTVGSLSAG NAIVDALS  GIRHIDTPCTP
Sbjct:  596 AFKVDKLPPGMEPGLYETATYRATSGNFPNGAHVCEVEIDPETGVTDVVRYSVVDDVGTVINPMLVKGQIMGGIAQGLGQVLMEDKAYDPQTGQVISGSFMDYAMPRAEDFCLLVVEDNPVPTPTNPLGVKGAGEAGTVGSLSAGVNAIVDALSGFGIRHIDTPCTP 762          
BLAST of mRNA_P-wetherbeei_contig58331.1.1 vs. uniprot
Match: A0A848W667_9PROT (Xanthine dehydrogenase family protein molybdopterin-binding subunit n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A848W667_9PROT)

HSP 1 Score: 291 bits (745), Expect = 1.480e-91
Identity = 138/167 (82.63%), Postives = 151/167 (90.42%), Query Frame = 1
Query:    1 AFDLGKLPKGMEPGLYETATYRATSGNFPNGAHVCEVEIDPETGVIRLVGYWVVDDVGTVINPMLVKGQIMGGIAQGMGQVLMEDKTYDPQTGQVIAGSFMDYAMPRAENFCPVVIEDNPVPTPTNPLGVKGAGEAGTVGSLSAGTNAIVDALSVLGIRHIDTPCTP 501
            AF L KLP  MEPGLYETATYR+ +GNFPNG H+CEVE+DP+TGV  +VGYWVVDDVGTVINP+L+KGQIMGGIAQG+GQVLMEDKTYDP TGQV+AGSFMDY MPRA++FC V I DNPVPTPTNPLGVKGAGEAGTVG+LSAG NAIVDALSV GIRHIDTP TP
Sbjct:  596 AFQLDKLPPDMEPGLYETATYRSPAGNFPNGCHICEVEVDPDTGVTDIVGYWVVDDVGTVINPLLLKGQIMGGIAQGIGQVLMEDKTYDPDTGQVLAGSFMDYGMPRADDFCQVEIVDNPVPTPTNPLGVKGAGEAGTVGALSAGLNAIVDALSVYGIRHIDTPATP 762          
BLAST of mRNA_P-wetherbeei_contig58331.1.1 vs. uniprot
Match: A0A2E7PKL7_9PROT (Ald_Xan_dh_C2 domain-containing protein n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A2E7PKL7_9PROT)

HSP 1 Score: 259 bits (663), Expect = 4.870e-86
Identity = 123/167 (73.65%), Postives = 140/167 (83.83%), Query Frame = 1
Query:    1 AFDLGKLPKGMEPGLYETATYRATSGNFPNGAHVCEVEIDPETGVIRLVGYWVVDDVGTVINPMLVKGQIMGGIAQGMGQVLMEDKTYDPQTGQVIAGSFMDYAMPRAENFCPVVIEDNPVPTPTNPLGVKGAGEAGTVGSLSAGTNAIVDALSVLGIRHIDTPCTP 501
            AF   KLP  +EPG YETATY   +G FPNG H+CEVE+DP+TGV ++VG+WVVDDVGT+INP LVKGQIMGGIAQGMGQVLMEDKTY P+TGQ++AGSFMDY MPRA++FC V  ++N VPTPTN LGVKGAGEAG V SLSAG NAIVDA+S LGI   DTPCTP
Sbjct:    8 AFRSNKLPDDIEPGFYETATYNLKTGAFPNGCHICEVEVDPDTGVTKVVGHWVVDDVGTIINPTLVKGQIMGGIAQGMGQVLMEDKTYGPETGQLLAGSFMDYCMPRADDFCHVAFKENEVPTPTNLLGVKGAGEAGAVESLSAGVNAIVDAVSHLGIEQTDTPCTP 174          
BLAST of mRNA_P-wetherbeei_contig58331.1.1 vs. uniprot
Match: A0A2E3XC68_9PROT (Carbon monoxide dehydrogenase n=2 Tax=Rhodospirillales TaxID=204441 RepID=A0A2E3XC68_9PROT)

HSP 1 Score: 262 bits (669), Expect = 2.250e-80
Identity = 121/167 (72.46%), Postives = 146/167 (87.43%), Query Frame = 1
Query:    1 AFDLGKLPKGMEPGLYETATYRATSGNFPNGAHVCEVEIDPETGVIRLVGYWVVDDVGTVINPMLVKGQIMGGIAQGMGQVLMEDKTYDPQTGQVIAGSFMDYAMPRAENFCPVVIEDNPVPTPTNPLGVKGAGEAGTVGSLSAGTNAIVDALSVLGIRHIDTPCTP 501
            +F++ KLP  MEPGLYETATYR+  GNFPNG H+CE+E+DPETG + ++GY+VVDDVGTVINP+L++GQI+GGI+QGMGQVLMEDK YD  TGQV++GSFMDY+MPRA++FC  VIE+N VPT  NPLGVKGAGEAG VG+LSAG NAIVD+LS+ GI HIDTP TP
Sbjct:  596 SFEVNKLPAYMEPGLYETATYRSPGGNFPNGCHICELEVDPETGFVEVLGYFVVDDVGTVINPLLLEGQIIGGISQGMGQVLMEDKNYDVNTGQVLSGSFMDYSMPRADDFCGFVIENNAVPTSMNPLGVKGAGEAGAVGALSAGVNAIVDSLSIYGISHIDTPATP 762          
BLAST of mRNA_P-wetherbeei_contig58331.1.1 vs. uniprot
Match: A0A2E7I7T9_9PROT (Carbon monoxide dehydrogenase n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A2E7I7T9_9PROT)

HSP 1 Score: 232 bits (592), Expect = 3.620e-69
Identity = 108/162 (66.67%), Postives = 131/162 (80.86%), Query Frame = 1
Query:   16 KLPKGMEPGLYETATYRATSGNFPNGAHVCEVEIDPETGVIRLVGYWVVDDVGTVINPMLVKGQIMGGIAQGMGQVLMEDKTYDPQTGQVIAGSFMDYAMPRAENFCPVVIEDNPVPTPTNPLGVKGAGEAGTVGSLSAGTNAIVDALSVLGIRHIDTPCTP 501
            KLP G+EPGLYETAT+      +PNG+HVCEVEIDP+TGV+ L GYWVVDDVG ++NP +VKGQI GGIAQG+GQVLME   YDP +GQ+++GSFMDYAMPRA+NF  + I  N VPT  NPLGVKGAGEAGTVG+L A  NAI++AL+ +G+ H+D P TP
Sbjct:  602 KLPAGVEPGLYETATFAPDDDTYPNGSHVCEVEIDPDTGVVELAGYWVVDDVGIMVNPTIVKGQIHGGIAQGLGQVLMEQVAYDPDSGQLLSGSFMDYAMPRADNFSNIEIVGNGVPTARNPLGVKGAGEAGTVGALPAMMNAIMNALAEIGVEHLDMPATP 763          
BLAST of mRNA_P-wetherbeei_contig58331.1.1 vs. uniprot
Match: A0A2V7HRQ6_9BACT (Carbon monoxide dehydrogenase (Fragment) n=1 Tax=Candidatus Rokubacteria bacterium TaxID=2053607 RepID=A0A2V7HRQ6_9BACT)

HSP 1 Score: 220 bits (561), Expect = 1.360e-68
Identity = 103/166 (62.05%), Postives = 127/166 (76.51%), Query Frame = 1
Query:    1 AFDLGKLPKGMEPGLYETATYRATSGNFPNGAHVCEVEIDPETGVIRLVGYWVVDDVGTVINPMLVKGQIMGGIAQGMGQVLMEDKTYDPQTGQVIAGSFMDYAMPRAENFCPVVIEDNPVPTPTNPLGVKGAGEAGTVGSLSAGTNAIVDALSVLGIRHIDTPCT 498
            AF  G LP+G+EPGLYET T+   S  +PNG HVCEVEIDPETG + LV Y V DDVGTVINP+ +KGQI GG+AQG+GQ LME   YDP +GQ++  SFMDYA+PRA+    +V+E +PVPT  NPLG KGAGEAGTVG+L    NA++DAL+ LG+RH+D P +
Sbjct:  166 AFQPGSLPRGVEPGLYETGTFSPLSDTWPNGCHVCEVEIDPETGAVALVAYVVADDVGTVINPVTLKGQIHGGVAQGVGQALMEQIVYDPDSGQLLTASFMDYALPRADTLPEMVVESHPVPTKLNPLGAKGAGEAGTVGALPVVMNAVLDALAPLGVRHLDMPAS 331          
BLAST of mRNA_P-wetherbeei_contig58331.1.1 vs. uniprot
Match: A0A2E7PJ45_9PROT (Carbon monoxide dehydrogenase n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A2E7PJ45_9PROT)

HSP 1 Score: 231 bits (588), Expect = 1.390e-68
Identity = 108/162 (66.67%), Postives = 131/162 (80.86%), Query Frame = 1
Query:   16 KLPKGMEPGLYETATYRATSGNFPNGAHVCEVEIDPETGVIRLVGYWVVDDVGTVINPMLVKGQIMGGIAQGMGQVLMEDKTYDPQTGQVIAGSFMDYAMPRAENFCPVVIEDNPVPTPTNPLGVKGAGEAGTVGSLSAGTNAIVDALSVLGIRHIDTPCTP 501
            KLP G+EPGLYETAT+      +PNG+HVC+VEIDP+TGV+  VGYWVVDDVG ++NP +VKGQI GGIAQG+GQVLME   YDP +GQ+++GSFMDYAMPRA+NF  + I  N VPT  NPLGVKGAGEAGTVG+L A  NAI+DAL+ +G+ H+D P TP
Sbjct:  602 KLPAGVEPGLYETATFAPEDDTYPNGSHVCKVEIDPDTGVVEPVGYWVVDDVGVMVNPTIVKGQIHGGIAQGLGQVLMEQVVYDPDSGQLLSGSFMDYAMPRADNFPDIEIVGNGVPTQRNPLGVKGAGEAGTVGALPAMMNAIMDALAGVGVEHLDMPATP 763          
BLAST of mRNA_P-wetherbeei_contig58331.1.1 vs. uniprot
Match: A0A537PL01_9PROT (Xanthine dehydrogenase family protein molybdopterin-binding subunit (Fragment) n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A537PL01_9PROT)

HSP 1 Score: 223 bits (567), Expect = 1.870e-68
Identity = 107/166 (64.46%), Postives = 127/166 (76.51%), Query Frame = 1
Query:    1 AFDLGKLPKGMEPGLYETATYRATSGNFPNGAHVCEVEIDPETGVIRLVGYWVVDDVGTVINPMLVKGQIMGGIAQGMGQVLMEDKTYDPQTGQVIAGSFMDYAMPRAENFCPVVIEDNPVPTPTNPLGVKGAGEAGTVGSLSAGTNAIVDALSVLGIRHIDTPCT 498
            +F   +LP GMEPGLYE ATY      FPNG HVCEVEIDPETG +RLVGY VVDDVGTVINP+ +KGQ+ GG+AQG+GQ+LME   YD  +GQ+++ SFMDYAMPRA+  C ++I +NPVPT TNPLG KGAGEAG VGSL A   AI+ AL  LG+R +D P T
Sbjct:  255 SFQPARLPAGMEPGLYEHATYAPERATFPNGCHVCEVEIDPETGEVRLVGYVVVDDVGTVINPLTLKGQVHGGLAQGIGQILMEQVAYDRDSGQLLSASFMDYAMPRADVMCDIMIHENPVPTRTNPLGAKGAGEAGCVGSLPAVMIAIMSALEPLGVRELDMPAT 420          
BLAST of mRNA_P-wetherbeei_contig58331.1.1 vs. uniprot
Match: A0A2E8XPJ2_9PROT (Carbon monoxide dehydrogenase n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A2E8XPJ2_9PROT)

HSP 1 Score: 229 bits (585), Expect = 3.730e-68
Identity = 106/162 (65.43%), Postives = 130/162 (80.25%), Query Frame = 1
Query:   16 KLPKGMEPGLYETATYRATSGNFPNGAHVCEVEIDPETGVIRLVGYWVVDDVGTVINPMLVKGQIMGGIAQGMGQVLMEDKTYDPQTGQVIAGSFMDYAMPRAENFCPVVIEDNPVPTPTNPLGVKGAGEAGTVGSLSAGTNAIVDALSVLGIRHIDTPCTP 501
            +LP G+EPGLYETAT+      +PNG+HVCEVEIDP+TGV+ +VGYWVVDDVG ++NP +VKGQI GGIAQG+GQVLME   YD  +GQ+++GSFMDYAMPRA+NFC + I  N VPT  NPLGVKGAGEAGTVG+L A  NAI+ AL  +G+ H+D P +P
Sbjct:  602 RLPAGVEPGLYETATFAPEDDTYPNGSHVCEVEIDPDTGVVEMVGYWVVDDVGVMVNPTIVKGQINGGIAQGLGQVLMEQVVYDRDSGQLLSGSFMDYAMPRADNFCDIEIVGNGVPTQRNPLGVKGAGEAGTVGALPAVMNAIMHALRDVGVEHLDVPASP 763          
BLAST of mRNA_P-wetherbeei_contig58331.1.1 vs. uniprot
Match: A0A537RQL2_9PROT (Ald_Xan_dh_C2 domain-containing protein n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A537RQL2_9PROT)

HSP 1 Score: 213 bits (543), Expect = 9.630e-68
Identity = 103/167 (61.68%), Postives = 127/167 (76.05%), Query Frame = 1
Query:    1 AFDLGKLPKGMEPGLYETATYRATSGNFPNGAHVCEVEIDPETGVIRLVGYWVVDDVGTVINPMLVKGQIMGGIAQGMGQVLMEDKTYDPQTGQVIAGSFMDYAMPRAENFCPVVIEDNPVPTPTNPLGVKGAGEAGTVGSLSAGTNAIVDALSVLGIRHIDTPCTP 501
            A++   LP GMEPGL  +A + A   NFPNG H+CE+EIDPETG + ++ Y VVDDVGTV+NP+L++GQI GGIAQG GQ+LMED  +DP +GQ++ GSFMDYAMPRA +   +  E NPVPT TNPLGVKGAGEAG VG++ A  NA+VDAL  LGIR +  P TP
Sbjct:   26 AWEPQSLPDGMEPGLVASAAFAAKQQNFPNGVHICELEIDPETGEVEILDYNVVDDVGTVLNPLLLEGQIRGGIAQGAGQILMEDIVFDPDSGQLLTGSFMDYAMPRAGDLSLMHCETNPVPTKTNPLGVKGAGEAGAVGAMPAIGNALVDALKPLGIREVPMPATP 192          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig58331.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A127F4C0_9HYPH1.100e-9588.62Carbon monoxide dehydrogenase n=1 Tax=Rhodoplanes ... [more]
A0A848W667_9PROT1.480e-9182.63Xanthine dehydrogenase family protein molybdopteri... [more]
A0A2E7PKL7_9PROT4.870e-8673.65Ald_Xan_dh_C2 domain-containing protein n=1 Tax=Rh... [more]
A0A2E3XC68_9PROT2.250e-8072.46Carbon monoxide dehydrogenase n=2 Tax=Rhodospirill... [more]
A0A2E7I7T9_9PROT3.620e-6966.67Carbon monoxide dehydrogenase n=1 Tax=Alphaproteob... [more]
A0A2V7HRQ6_9BACT1.360e-6862.05Carbon monoxide dehydrogenase (Fragment) n=1 Tax=C... [more]
A0A2E7PJ45_9PROT1.390e-6866.67Carbon monoxide dehydrogenase n=1 Tax=Rhodospirill... [more]
A0A537PL01_9PROT1.870e-6864.46Xanthine dehydrogenase family protein molybdopteri... [more]
A0A2E8XPJ2_9PROT3.730e-6865.43Carbon monoxide dehydrogenase n=1 Tax=Alphaproteob... [more]
A0A537RQL2_9PROT9.630e-6861.68Ald_Xan_dh_C2 domain-containing protein n=1 Tax=Al... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig58331contigP-wetherbeei_contig58331:3..503 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog1532558.JL39_00935
PFAMsAld_Xan_dh_C,Ald_Xan_dh_C2
Model size501
Max annot lvl28211|Alphaproteobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue2.1e-54
EggNOG OGsCOG1529@1|root,COG1529@2|Bacteria,1MUEA@1224|Proteobacteria,2U14G@28211|Alphaproteobacteria,4BJ4Y@82115|Rhizobiaceae
DescriptionAldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain
Cds size471
COG categoryC
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186864.2628663-UTR-P-wetherbeei_contig58331:2..321683186864.2628663-UTR-P-wetherbeei_contig58331:2..32Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig58331 3..32 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186864.275721-CDS-P-wetherbeei_contig58331:32..5031683186864.275721-CDS-P-wetherbeei_contig58331:32..503Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig58331 33..503 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig58331.1.1prot_P-wetherbeei_contig58331.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig58331 33..503 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig58331.1.1

>prot_P-wetherbeei_contig58331.1.1 ID=prot_P-wetherbeei_contig58331.1.1|Name=mRNA_P-wetherbeei_contig58331.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=157bp
MEPGLYETATYRATSGNFPNGAHVCEVEIDPETGVIRLVGYWVVDDVGTV
INPMLVKGQIMGGIAQGMGQVLMEDKTYDPQTGQVIAGSFMDYAMPRAEN
FCPVVIEDNPVPTPTNPLGVKGAGEAGTVGSLSAGTNAIVDALSVLGIRH
IDTPCTP
back to top

mRNA from alignment at P-wetherbeei_contig58331:3..503+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig58331.1.1 ID=mRNA_P-wetherbeei_contig58331.1.1|Name=mRNA_P-wetherbeei_contig58331.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=501bp|location=Sequence derived from alignment at P-wetherbeei_contig58331:3..503+ (Phaeothamnion wetherbeei SAG_119_79)
GCCTTCGATCTCGGCAAGCTGCCGAAGGGAATGGAGCCCGGCCTTTACGA GACCGCGACCTACCGCGCGACCAGCGGCAACTTCCCCAACGGCGCCCATG TCTGCGAGGTCGAGATCGACCCGGAAACGGGCGTCATCCGGCTGGTCGGA TATTGGGTGGTGGACGACGTGGGCACCGTCATCAACCCCATGCTGGTGAA GGGCCAGATCATGGGCGGCATCGCACAGGGCATGGGTCAGGTGCTGATGG AGGACAAGACCTACGATCCGCAGACCGGCCAGGTGATCGCAGGTTCGTTC ATGGATTACGCAATGCCGCGCGCGGAGAATTTCTGCCCGGTCGTCATCGA GGACAATCCGGTGCCGACGCCGACCAATCCGCTCGGCGTCAAGGGCGCGG GCGAAGCCGGCACGGTCGGCTCATTGTCGGCGGGGACGAACGCCATCGTC GATGCCTTGTCGGTGCTCGGCATCCGTCACATCGACACGCCGTGCACGCC G
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig58331:3..503+

>mRNA_P-wetherbeei_contig58331.1.1 ID=mRNA_P-wetherbeei_contig58331.1.1|Name=mRNA_P-wetherbeei_contig58331.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=471bp|location=Sequence derived from alignment at P-wetherbeei_contig58331:3..503+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGAGCCCGGCCTTTACGAGACCGCGACCTACCGCGCGACCAGCGGCAA
CTTCCCCAACGGCGCCCATGTCTGCGAGGTCGAGATCGACCCGGAAACGG
GCGTCATCCGGCTGGTCGGATATTGGGTGGTGGACGACGTGGGCACCGTC
ATCAACCCCATGCTGGTGAAGGGCCAGATCATGGGCGGCATCGCACAGGG
CATGGGTCAGGTGCTGATGGAGGACAAGACCTACGATCCGCAGACCGGCC
AGGTGATCGCAGGTTCGTTCATGGATTACGCAATGCCGCGCGCGGAGAAT
TTCTGCCCGGTCGTCATCGAGGACAATCCGGTGCCGACGCCGACCAATCC
GCTCGGCGTCAAGGGCGCGGGCGAAGCCGGCACGGTCGGCTCATTGTCGG
CGGGGACGAACGCCATCGTCGATGCCTTGTCGGTGCTCGGCATCCGTCAC
ATCGACACGCCGTGCACGCCG
back to top