mRNA_P-wetherbeei_contig5832.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig5832.1.1
Unique NamemRNA_P-wetherbeei_contig5832.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig5832.1.1 vs. uniprot
Match: D7G3J2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G3J2_ECTSI)

HSP 1 Score: 140 bits (353), Expect = 7.170e-32
Identity = 101/354 (28.53%), Postives = 150/354 (42.37%), Query Frame = 1 
Query:   76 SRLRPG--LTPVTQELGETFRLRRILFARGARGDDDCKFIARFLQERSTIWREPYWAALSPADRATLCRGARIMTTNEPAKMPSNSPPQSPLGXXXXXXXXXXXXXXXXXXXXXXXXXXGDTSEGSVVTGSGXXXXXXXXXXXXXSGIDQRNQRIDFVLSQASVDGALYVMLKGIAQVRCLDATQTAVGFDVLESFGFLPLPPELRARADAAVEAIGSNPRSKIYRGEKDFEARRGALAAAGKGRVTIGPASQCLVLTAEHLEGELKRQAATERRNSVLHELGLEWLAAADAA---------------RRAAXXEPLLHERXFAXXXXXXGAAAPPDAIFIVLEGECAIVRGGE 1086
            S+LR G  L P T EL +TF LRRIL   G R +++C  + +FL ER+TIWREP+WA +S  ++  +    ++        +PS+  P                                                                   DFV + ++    ++  LKG+AQV+C D++ T + F  LE+FGFLP+P  L   A   VE + SNPRSK+YRGE+++  R  A   AGK RV I P  Q L +    +   LK+ A    R+ ++  +GLE                             E L+ E  +          A P  +F+++EGEC IV+ G+
Sbjct:   18 SKLRRGADLAPATLELKQTFALRRILLKHGERTEEECSAVRKFLAERTTIWREPFWALVSKREQLKIASCVKLRM------VPSDGEPH------------------------------------------------------------------DFVAADSTSGCMIFSALKGLAQVQCFDSSGTRLEFQELETFGFLPVPEVLLEEAIRGVERVKSNPRSKVYRGEREYGERHQATTEAGKIRVKIAPDGQYLSINGAEVVPMLKKLAENRGRSRLMKSMGLELPGMGGEGGFGGEVGXXXXXXXXXXXRKREALMREARYGVGSILVHEGASPTMVFVIVEGECRIVKSGK 299
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig5832.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G3J2_ECTSI7.170e-3228.53Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig5832contigP-wetherbeei_contig5832:129..1851 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size1493
Hectar predicted targeting categoryother localisation
Exons2
Ec32 ortholog descriptionRmlC-like jelly roll fold
Ec32 orthologEc-19_004810.1
Cds size1473
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186864.1370685-UTR-P-wetherbeei_contig5832:128..1461683186864.1370685-UTR-P-wetherbeei_contig5832:128..146Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig5832 129..146 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186864.1476388-CDS-P-wetherbeei_contig5832:146..2181683186864.1476388-CDS-P-wetherbeei_contig5832:146..218Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5832 147..218 +
1683186864.158102-CDS-P-wetherbeei_contig5832:450..18511683186864.158102-CDS-P-wetherbeei_contig5832:450..1851Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5832 451..1851 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig5832.1.1prot_P-wetherbeei_contig5832.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig5832 147..1851 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig5832.1.1

>prot_P-wetherbeei_contig5832.1.1 ID=prot_P-wetherbeei_contig5832.1.1|Name=mRNA_P-wetherbeei_contig5832.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=491bp
MGPSRPLPVSNVAADVKNLSRLRPGLTPVTQELGETFRLRRILFARGARG
DDDCKFIARFLQERSTIWREPYWAALSPADRATLCRGARIMTTNEPAKMP
SNSPPQSPLGGGGGSSSNAQNGAVGGAGSSSSSVASGDTSEGSVVTGSGG
SNGGSSGGGSGGSGIDQRNQRIDFVLSQASVDGALYVMLKGIAQVRCLDA
TQTAVGFDVLESFGFLPLPPELRARADAAVEAIGSNPRSKIYRGEKDFEA
RRGALAAAGKGRVTIGPASQCLVLTAEHLEGELKRQAATERRNSVLHELG
LEWLAAADAARRAARREPLLHERRFAAGAVIVGAAAPPDAIFIVLEGECA
IVRGGEGLHATCLGFADSGKSSGGGSGNGADGNSGGDRRGGSSGSGGSRK
HTAQIATTTTPKVALDRRTTAGGATVSTAAVTTPAACPGSVAAGTGAAPF
SAGDKRTSNRVGSGAFTAPAAGSLGSSALGSNSAVAATAAA
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mRNA from alignment at P-wetherbeei_contig5832:129..1851+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig5832.1.1 ID=mRNA_P-wetherbeei_contig5832.1.1|Name=mRNA_P-wetherbeei_contig5832.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1723bp|location=Sequence derived from alignment at P-wetherbeei_contig5832:129..1851+ (Phaeothamnion wetherbeei SAG_119_79)
GTAAGGGAACAACGAAAAATGGGCCCTTCCAGGCCGCTGCCGGTCAGCAA
TGTGGCCGCTGACGTTAAAAACCTGAGTCGACTTCGGCCGGTGGGTTTTC
ATCCTTTTTTTGAGAGGCTGACCCAACCAGACGACATCCTCGGCTCCGTG
CGATCCTTCTCCTTGCTCGACCTCTCTAGTTGTCTAGGTCGAGCCATGTT
TACCTTCTTCTATTCTCTGTTGCAGGTTCATAGTGGGACCAGAATCATAG
TTAGACCCCAATTTCCTACCTTTTTTGAGTGCGCAACACGCAAAACATCT
TCCGAACACCACTACATCCCAGGGCCTCACACCGGTTACACAAGAGCTCG
GGGAAACCTTCCGGCTGCGTCGAATACTTTTCGCCCGCGGCGCCCGTGGC
GACGACGATTGCAAGTTCATTGCACGCTTCCTCCAGGAACGCTCCACAAT
CTGGCGGGAGCCATACTGGGCGGCGCTGTCGCCTGCTGACCGAGCTACGC
TCTGTCGCGGGGCGCGCATCATGACCACGAACGAGCCTGCGAAAATGCCC
TCAAACTCCCCGCCGCAGTCCCCGCTGGGCGGCGGCGGCGGCAGCAGCAG
CAATGCACAGAACGGCGCCGTCGGTGGCGCCGGCAGCAGCAGCAGCAGTG
TCGCGAGTGGCGATACCAGCGAAGGCAGCGTTGTCACCGGCAGCGGCGGA
TCTAATGGCGGCAGCAGTGGTGGCGGTAGCGGCGGTAGCGGGATCGACCA
GCGCAACCAGCGCATCGACTTTGTGCTCTCCCAAGCGTCGGTCGATGGCG
CCCTGTACGTCATGCTCAAGGGCATCGCCCAGGTGCGCTGCCTCGACGCC
ACCCAGACGGCCGTCGGCTTCGACGTCCTTGAGTCTTTTGGTTTCCTGCC
GCTGCCGCCGGAGCTGCGTGCCCGTGCCGACGCTGCAGTCGAGGCCATCG
GCAGCAATCCGCGCAGCAAGATCTACCGCGGCGAGAAGGACTTCGAGGCC
CGCCGCGGGGCTCTGGCCGCCGCCGGCAAGGGTCGCGTCACCATCGGCCC
CGCCAGCCAGTGCCTCGTTTTGACCGCAGAGCATTTGGAAGGGGAACTCA
AGCGGCAGGCCGCCACGGAGCGCCGCAACTCCGTCCTGCACGAGCTGGGG
CTGGAGTGGCTGGCCGCCGCCGACGCCGCGCGGCGCGCCGCCCGCCGTGA
GCCGCTGTTGCACGAACGCCGTTTCGCCGCCGGCGCTGTCATCGTCGGGG
CTGCTGCGCCGCCCGACGCCATCTTCATCGTGCTGGAAGGGGAGTGTGCC
ATCGTCCGCGGCGGGGAAGGGCTGCACGCGACGTGCCTCGGCTTTGCTGA
TAGCGGTAAGAGCAGCGGTGGCGGCAGCGGCAACGGTGCCGATGGCAATA
GCGGCGGCGACAGAAGGGGCGGCAGCAGCGGCAGCGGCGGCAGCAGAAAG
CACACCGCCCAGATAGCGACGACAACGACTCCTAAAGTGGCGCTGGATCG
CCGAACAACTGCCGGTGGCGCCACTGTTTCCACGGCAGCGGTAACGACAC
CAGCGGCCTGTCCAGGAAGCGTTGCCGCGGGAACCGGCGCCGCCCCTTTT
TCCGCTGGCGACAAAAGGACATCCAACAGAGTCGGAAGCGGTGCATTCAC
CGCCCCCGCCGCTGGCTCTCTGGGTTCTTCTGCCCTCGGCAGCAACAGCG
CCGTCGCAGCAACAGCAGCAGCG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig5832:129..1851+

>mRNA_P-wetherbeei_contig5832.1.1 ID=mRNA_P-wetherbeei_contig5832.1.1|Name=mRNA_P-wetherbeei_contig5832.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1473bp|location=Sequence derived from alignment at P-wetherbeei_contig5832:129..1851+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGGCCCTTCCAGGCCGCTGCCGGTCAGCAATGTGGCCGCTGACGTTAA
AAACCTGAGTCGACTTCGGCCGGGCCTCACACCGGTTACACAAGAGCTCG
GGGAAACCTTCCGGCTGCGTCGAATACTTTTCGCCCGCGGCGCCCGTGGC
GACGACGATTGCAAGTTCATTGCACGCTTCCTCCAGGAACGCTCCACAAT
CTGGCGGGAGCCATACTGGGCGGCGCTGTCGCCTGCTGACCGAGCTACGC
TCTGTCGCGGGGCGCGCATCATGACCACGAACGAGCCTGCGAAAATGCCC
TCAAACTCCCCGCCGCAGTCCCCGCTGGGCGGCGGCGGCGGCAGCAGCAG
CAATGCACAGAACGGCGCCGTCGGTGGCGCCGGCAGCAGCAGCAGCAGTG
TCGCGAGTGGCGATACCAGCGAAGGCAGCGTTGTCACCGGCAGCGGCGGA
TCTAATGGCGGCAGCAGTGGTGGCGGTAGCGGCGGTAGCGGGATCGACCA
GCGCAACCAGCGCATCGACTTTGTGCTCTCCCAAGCGTCGGTCGATGGCG
CCCTGTACGTCATGCTCAAGGGCATCGCCCAGGTGCGCTGCCTCGACGCC
ACCCAGACGGCCGTCGGCTTCGACGTCCTTGAGTCTTTTGGTTTCCTGCC
GCTGCCGCCGGAGCTGCGTGCCCGTGCCGACGCTGCAGTCGAGGCCATCG
GCAGCAATCCGCGCAGCAAGATCTACCGCGGCGAGAAGGACTTCGAGGCC
CGCCGCGGGGCTCTGGCCGCCGCCGGCAAGGGTCGCGTCACCATCGGCCC
CGCCAGCCAGTGCCTCGTTTTGACCGCAGAGCATTTGGAAGGGGAACTCA
AGCGGCAGGCCGCCACGGAGCGCCGCAACTCCGTCCTGCACGAGCTGGGG
CTGGAGTGGCTGGCCGCCGCCGACGCCGCGCGGCGCGCCGCCCGCCGTGA
GCCGCTGTTGCACGAACGCCGTTTCGCCGCCGGCGCTGTCATCGTCGGGG
CTGCTGCGCCGCCCGACGCCATCTTCATCGTGCTGGAAGGGGAGTGTGCC
ATCGTCCGCGGCGGGGAAGGGCTGCACGCGACGTGCCTCGGCTTTGCTGA
TAGCGGTAAGAGCAGCGGTGGCGGCAGCGGCAACGGTGCCGATGGCAATA
GCGGCGGCGACAGAAGGGGCGGCAGCAGCGGCAGCGGCGGCAGCAGAAAG
CACACCGCCCAGATAGCGACGACAACGACTCCTAAAGTGGCGCTGGATCG
CCGAACAACTGCCGGTGGCGCCACTGTTTCCACGGCAGCGGTAACGACAC
CAGCGGCCTGTCCAGGAAGCGTTGCCGCGGGAACCGGCGCCGCCCCTTTT
TCCGCTGGCGACAAAAGGACATCCAACAGAGTCGGAAGCGGTGCATTCAC
CGCCCCCGCCGCTGGCTCTCTGGGTTCTTCTGCCCTCGGCAGCAACAGCG
CCGTCGCAGCAACAGCAGCAGCG
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