mRNA_P-wetherbeei_contig58306.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig58306.1.1
Unique NamemRNA_P-wetherbeei_contig58306.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig58306.1.1 vs. uniprot
Match: A0A7C2M306_9HYPH (Glucose 1-dehydrogenase n=1 Tax=Hyphomicrobiales bacterium TaxID=1909294 RepID=A0A7C2M306_9HYPH)

HSP 1 Score: 251 bits (642), Expect = 3.410e-82
Identity = 122/158 (77.22%), Postives = 140/158 (88.61%), Query Frame = 1 
Query:    1 GTNRPAAFLEVKVEDFDHVMGLNVRAAYFVAQAFAQRLVAVKRPGSIVNVSSQMGHVGSPRRTVYCATKHAMEGFTKAMGIELAPHGIRVNSIGPTFLDTPMTRPFFENQAFKADVLSRIKLGRLGTLDEVAAGIVFLASSASGLMTGSALVMDGGWT 474
            GTNRP   ++V VEDFD +MGLNVRAAYFVAQA A+RL+A  RPGSI+NVSSQMGHVG+ RRTVYCA+KHAMEGFTKAM IELAPHGIRVNS+GPTFL+TP+TRPFFEN AFKA+VL++IKLGRLG L ++   I+FLAS AS LMTGSALV+DGGWT
Sbjct:   98 GTNRPKMLMDVTVEDFDAIMGLNVRAAYFVAQAVARRLIAAGRPGSIINVSSQMGHVGAARRTVYCASKHAMEGFTKAMAIELAPHGIRVNSLGPTFLETPLTRPFFENAAFKAEVLAKIKLGRLGQLGDITGAILFLASDASALMTGSALVVDGGWT 255
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BLAST of mRNA_P-wetherbeei_contig58306.1.1 vs. uniprot
Match: A0A363TSB0_9BRAD (3-oxoacyl-ACP reductase n=1 Tax=Bradyrhizobiaceae bacterium TaxID=2072420 RepID=A0A363TSB0_9BRAD)

HSP 1 Score: 246 bits (628), Expect = 4.870e-80
Identity = 120/158 (75.95%), Postives = 139/158 (87.97%), Query Frame = 1 
Query:    1 GTNRPAAFLEVKVEDFDHVMGLNVRAAYFVAQAFAQRLVAVKRPGSIVNVSSQMGHVGSPRRTVYCATKHAMEGFTKAMGIELAPHGIRVNSIGPTFLDTPMTRPFFENQAFKADVLSRIKLGRLGTLDEVAAGIVFLASSASGLMTGSALVMDGGWT 474
            GTNRP   +EV VEDFD +MGLNVRAAYFVAQA A+RL+A   PGSIVNVSSQMGHVG+ RRTVYCA+KHAMEGFTKAM IELAPH IRVNS+GPTF++TPMTRPFFEN+AF+ +VL++IKLGR+G LDE+   I+FLAS AS LMTG+ALV+DGGWT
Sbjct:  100 GTNRPKPLMEVTVEDFDVIMGLNVRAAYFVAQAVARRLLAAGAPGSIVNVSSQMGHVGAARRTVYCASKHAMEGFTKAMAIELAPHRIRVNSLGPTFIETPMTRPFFENEAFRREVLAKIKLGRIGQLDELTGAILFLASDASSLMTGAALVVDGGWT 257
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BLAST of mRNA_P-wetherbeei_contig58306.1.1 vs. uniprot
Match: A0A6N7GQV0_9HYPH (Glucose 1-dehydrogenase n=1 Tax=Hyphomicrobiales bacterium TaxID=1909294 RepID=A0A6N7GQV0_9HYPH)

HSP 1 Score: 243 bits (621), Expect = 5.120e-79
Identity = 116/158 (73.42%), Postives = 137/158 (86.71%), Query Frame = 1 
Query:    1 GTNRPAAFLEVKVEDFDHVMGLNVRAAYFVAQAFAQRLVAVKRPGSIVNVSSQMGHVGSPRRTVYCATKHAMEGFTKAMGIELAPHGIRVNSIGPTFLDTPMTRPFFENQAFKADVLSRIKLGRLGTLDEVAAGIVFLASSASGLMTGSALVMDGGWT 474
            GTNRP    +V ++DFD +MGLNVRAAYFVAQA A+RL+  ++PGSI+N+SSQMGHVG+ RRTVYC +KHAMEGFTKAM IELAPH IRVNS+GPTFL+TPMT+PFFEN+ F+ +VLS+IKLGRLG LDE+   IVFLAS AS LMTGSALV+DGGWT
Sbjct:   97 GTNRPKLLTDVTIDDFDAIMGLNVRAAYFVAQAVARRLIEARQPGSIINISSQMGHVGAARRTVYCTSKHAMEGFTKAMAIELAPHNIRVNSLGPTFLETPMTKPFFENKPFRDEVLSKIKLGRLGQLDELTGAIVFLASDASSLMTGSALVIDGGWT 254
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BLAST of mRNA_P-wetherbeei_contig58306.1.1 vs. uniprot
Match: A0A127F1U5_9HYPH (3-oxoacyl-ACP reductase n=1 Tax=Rhodoplanes sp. Z2-YC6860 TaxID=674703 RepID=A0A127F1U5_9HYPH)

HSP 1 Score: 243 bits (620), Expect = 7.500e-79
Identity = 118/158 (74.68%), Postives = 138/158 (87.34%), Query Frame = 1 
Query:    1 GTNRPAAFLEVKVEDFDHVMGLNVRAAYFVAQAFAQRLVAVKRPGSIVNVSSQMGHVGSPRRTVYCATKHAMEGFTKAMGIELAPHGIRVNSIGPTFLDTPMTRPFFENQAFKADVLSRIKLGRLGTLDEVAAGIVFLASSASGLMTGSALVMDGGWT 474
            G NRPA   +VKVEDFD + GLNVRAA+F+AQ  A RL+A K+PGSI+N+SSQMGHVG+ RRTVYCA+KHAMEGFTKAM IELAPH IRVNS+GPTFL+TPMT+PFFEN+AF+ +VLS+IKLGRLG L+E+   IVFLAS AS LMTGSALV+DGGWT
Sbjct:   98 GMNRPAHLPDVKVEDFDAIFGLNVRAAFFMAQTVALRLIAAKQPGSIINISSQMGHVGAARRTVYCASKHAMEGFTKAMAIELAPHNIRVNSLGPTFLETPMTKPFFENKAFRDEVLSKIKLGRLGQLEELNGAIVFLASDASSLMTGSALVLDGGWT 255
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BLAST of mRNA_P-wetherbeei_contig58306.1.1 vs. uniprot
Match: A0A537UCN3_9PROT (Glucose 1-dehydrogenase n=5 Tax=unclassified Alphaproteobacteria TaxID=33807 RepID=A0A537UCN3_9PROT)

HSP 1 Score: 243 bits (619), Expect = 1.170e-78
Identity = 115/158 (72.78%), Postives = 140/158 (88.61%), Query Frame = 1 
Query:    1 GTNRPAAFLEVKVEDFDHVMGLNVRAAYFVAQAFAQRLVAVKRPGSIVNVSSQMGHVGSPRRTVYCATKHAMEGFTKAMGIELAPHGIRVNSIGPTFLDTPMTRPFFENQAFKADVLSRIKLGRLGTLDEVAAGIVFLASSASGLMTGSALVMDGGWT 474
            GTNRPA  ++VK+EDFD +  LNVRAA+F+AQA A+RL+  KRPGSI+N+SSQMGHVG+ RR+VYCA+KHAMEGFTKAM IELA H IRVNS+GPTFL+TPMTRPFFE++AF+A+VL++IKLGRLG LDE+   I+FLAS AS LMTG+ALV+DGGWT
Sbjct:  101 GTNRPAHLVDVKIEDFDAIFALNVRAAFFMAQAVARRLIEAKRPGSIINISSQMGHVGAARRSVYCASKHAMEGFTKAMAIELAQHNIRVNSLGPTFLETPMTRPFFEDEAFRAEVLAKIKLGRLGQLDELTGAILFLASDASSLMTGAALVLDGGWT 258
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BLAST of mRNA_P-wetherbeei_contig58306.1.1 vs. uniprot
Match: A0A537LBN2_9PROT (SDR family oxidoreductase n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A537LBN2_9PROT)

HSP 1 Score: 242 bits (617), Expect = 2.070e-78
Identity = 115/158 (72.78%), Postives = 139/158 (87.97%), Query Frame = 1 
Query:    1 GTNRPAAFLEVKVEDFDHVMGLNVRAAYFVAQAFAQRLVAVKRPGSIVNVSSQMGHVGSPRRTVYCATKHAMEGFTKAMGIELAPHGIRVNSIGPTFLDTPMTRPFFENQAFKADVLSRIKLGRLGTLDEVAAGIVFLASSASGLMTGSALVMDGGWT 474
            GTNRP   L+V +ED+D +MGLNVRAAYFVAQA A+RL+  ++ GSI+N+SSQMGHVG+ RRTVYCA+KHAMEGFTKAM IELAPH IRVNS+GPTF++TP+T+PFFEN+AF+ +VLS+IKLGR+G LDE+   IVFLAS AS LMTGSALV+DGGWT
Sbjct:   97 GTNRPKPLLDVTIEDYDAIMGLNVRAAYFVAQAVARRLIEARQSGSILNISSQMGHVGAARRTVYCASKHAMEGFTKAMAIELAPHDIRVNSLGPTFIETPLTKPFFENEAFRKEVLSKIKLGRIGQLDELTGAIVFLASDASRLMTGSALVVDGGWT 254
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BLAST of mRNA_P-wetherbeei_contig58306.1.1 vs. uniprot
Match: A0A6L5FM50_9HYPH (Glucose 1-dehydrogenase n=2 Tax=Hyphomicrobiales bacterium TaxID=1909294 RepID=A0A6L5FM50_9HYPH)

HSP 1 Score: 241 bits (616), Expect = 2.940e-78
Identity = 116/158 (73.42%), Postives = 139/158 (87.97%), Query Frame = 1 
Query:    1 GTNRPAAFLEVKVEDFDHVMGLNVRAAYFVAQAFAQRLVAVKRPGSIVNVSSQMGHVGSPRRTVYCATKHAMEGFTKAMGIELAPHGIRVNSIGPTFLDTPMTRPFFENQAFKADVLSRIKLGRLGTLDEVAAGIVFLASSASGLMTGSALVMDGGWT 474
            GTNRPA  ++V V DFD VM LN+RAA+FVAQA A+RL+  K+PGSI+N+SSQMGHVG+ RRTVYCA+KHAMEGFTKAM +ELAPH IRVN++GPTFL+TPMT+PFFEN+AF+ +VLS+IKLGRLG L+E+   IVFLAS AS LMTGSALV+DGGWT
Sbjct:   97 GTNRPAHLMDVTVADFDAVMNLNLRAAFFVAQAVARRLLDAKQPGSIINISSQMGHVGAARRTVYCASKHAMEGFTKAMAVELAPHNIRVNTLGPTFLETPMTKPFFENKAFRDEVLSKIKLGRLGQLEELTGAIVFLASDASSLMTGSALVLDGGWT 254
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BLAST of mRNA_P-wetherbeei_contig58306.1.1 vs. uniprot
Match: A0A0S3PR20_9BRAD (Gluconate 5-dehydrogenase n=1 Tax=Variibacter gotjawalensis TaxID=1333996 RepID=A0A0S3PR20_9BRAD)

HSP 1 Score: 240 bits (613), Expect = 7.870e-78
Identity = 111/158 (70.25%), Postives = 139/158 (87.97%), Query Frame = 1 
Query:    1 GTNRPAAFLEVKVEDFDHVMGLNVRAAYFVAQAFAQRLVAVKRPGSIVNVSSQMGHVGSPRRTVYCATKHAMEGFTKAMGIELAPHGIRVNSIGPTFLDTPMTRPFFENQAFKADVLSRIKLGRLGTLDEVAAGIVFLASSASGLMTGSALVMDGGWT 474
            GTNRPAAF++V +EDFD +  LNVRAAYFVAQA A+RL+  K+PGSI+N+SSQMGHVG  RRTVYCA+KHAMEGFTKAM IELAPHG+RVN+IGPTF++TP+T+PFFEN+AF  D L +IKLGRLG ++++   +VFLA+ ASGLMTGS++++DGGWT
Sbjct:   95 GTNRPAAFVDVTLEDFDAIFDLNVRAAYFVAQAVARRLIDAKQPGSIINISSQMGHVGGARRTVYCASKHAMEGFTKAMAIELAPHGVRVNTIGPTFIETPLTKPFFENKAFLDDTLKKIKLGRLGKIEDLMGAVVFLAADASGLMTGSSMLIDGGWT 252
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BLAST of mRNA_P-wetherbeei_contig58306.1.1 vs. uniprot
Match: A0A345ZWQ1_9HYPH (SDR family NAD(P)-dependent oxidoreductase n=1 Tax=Pseudolabrys taiwanensis TaxID=331696 RepID=A0A345ZWQ1_9HYPH)

HSP 1 Score: 240 bits (613), Expect = 7.870e-78
Identity = 115/158 (72.78%), Postives = 136/158 (86.08%), Query Frame = 1 
Query:    1 GTNRPAAFLEVKVEDFDHVMGLNVRAAYFVAQAFAQRLVAVKRPGSIVNVSSQMGHVGSPRRTVYCATKHAMEGFTKAMGIELAPHGIRVNSIGPTFLDTPMTRPFFENQAFKADVLSRIKLGRLGTLDEVAAGIVFLASSASGLMTGSALVMDGGWT 474
            GTN+PA F++VKVEDFD V  LNVRAAYFVAQA A++LV   +PG+I+N+SSQMGHVG P RTVYCATKHAMEGFTKAM I+LAPH IRVNSI PTF++TPMTRPFF+NQAF+ D L RIKLGRLG L+++   IVFLAS A+ LMTG++LV+DGGWT
Sbjct:   95 GTNKPAPFVDVKVEDFDFVFSLNVRAAYFVAQAVARKLVEAGKPGAIINMSSQMGHVGGPTRTVYCATKHAMEGFTKAMAIDLAPHKIRVNSIAPTFIETPMTRPFFQNQAFREDTLKRIKLGRLGQLEDLTGAIVFLASDAAALMTGASLVVDGGWT 252
[Close]
BLAST of mRNA_P-wetherbeei_contig58306.1.1 vs. uniprot
Match: A0A3N5NAH2_9HYPH (SDR family oxidoreductase n=1 Tax=Hyphomicrobiaceae bacterium TaxID=2015799 RepID=A0A3N5NAH2_9HYPH)

HSP 1 Score: 238 bits (608), Expect = 4.530e-77
Identity = 114/158 (72.15%), Postives = 138/158 (87.34%), Query Frame = 1 
Query:    1 GTNRPAAFLEVKVEDFDHVMGLNVRAAYFVAQAFAQRLVAVKRPGSIVNVSSQMGHVGSPRRTVYCATKHAMEGFTKAMGIELAPHGIRVNSIGPTFLDTPMTRPFFENQAFKADVLSRIKLGRLGTLDEVAAGIVFLASSASGLMTGSALVMDGGWT 474
            GTNRP   +EV +EDFD +M LNVRA+YFVAQA A+RL+  K+ GSI+NVSSQMGHVG+ RRTVYCA+KHAMEGFTKAM IELAPH IRVN++GPTFLDTP+TRPFFEN+AF+ +V+++IK GRLGT++E+   IVFLAS AS LMTGSAL++DGGWT
Sbjct:   95 GTNRPKPLVEVTIEDFDAIMALNVRASYFVAQAVARRLIESKQAGSIINVSSQMGHVGAARRTVYCASKHAMEGFTKAMAIELAPHKIRVNTLGPTFLDTPLTRPFFENKAFRDEVVAKIKFGRLGTVEEMLGAIVFLASDASSLMTGSALLLDGGWT 252
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig58306.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7C2M306_9HYPH3.410e-8277.22Glucose 1-dehydrogenase n=1 Tax=Hyphomicrobiales b... [more]
A0A363TSB0_9BRAD4.870e-8075.953-oxoacyl-ACP reductase n=1 Tax=Bradyrhizobiaceae ... [more]
A0A6N7GQV0_9HYPH5.120e-7973.42Glucose 1-dehydrogenase n=1 Tax=Hyphomicrobiales b... [more]
A0A127F1U5_9HYPH7.500e-7974.683-oxoacyl-ACP reductase n=1 Tax=Rhodoplanes sp. Z2... [more]
A0A537UCN3_9PROT1.170e-7872.78Glucose 1-dehydrogenase n=5 Tax=unclassified Alpha... [more]
A0A537LBN2_9PROT2.070e-7872.78SDR family oxidoreductase n=1 Tax=Alphaproteobacte... [more]
A0A6L5FM50_9HYPH2.940e-7873.42Glucose 1-dehydrogenase n=2 Tax=Hyphomicrobiales b... [more]
A0A0S3PR20_9BRAD7.870e-7870.25Gluconate 5-dehydrogenase n=1 Tax=Variibacter gotj... [more]
A0A345ZWQ1_9HYPH7.870e-7872.78SDR family NAD(P)-dependent oxidoreductase n=1 Tax... [more]
A0A3N5NAH2_9HYPH4.530e-7772.15SDR family oxidoreductase n=1 Tax=Hyphomicrobiacea... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig58306contigP-wetherbeei_contig58306:20..493 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog1054213.HMPREF9946_03192
Preferred namegno_3
PFAMsadh_short_C2
Model size474
Max annot lvl28211|Alphaproteobacteria
KEGG rclassRC00089
KEGG koko:K00046,ko:K00065
KEGG ReactionR01542
KEGG Pathwayko00040,map00040
Hectar predicted targeting categoryother localisation
Exons1
Evalue3.6e-72
EggNOG OGsCOG1028@1|root,COG1028@2|Bacteria,1MWB6@1224|Proteobacteria,2TUKJ@28211|Alphaproteobacteria
EC1.1.1.127,1.1.1.69
DescriptionCOG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)
Cds size474
COG categoryIQ
BRITEko00000,ko00001,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186863.9373255-CDS-P-wetherbeei_contig58306:19..4931683186863.9373255-CDS-P-wetherbeei_contig58306:19..493Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig58306 20..493 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig58306.1.1prot_P-wetherbeei_contig58306.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig58306 20..493 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig58306.1.1

>prot_P-wetherbeei_contig58306.1.1 ID=prot_P-wetherbeei_contig58306.1.1|Name=mRNA_P-wetherbeei_contig58306.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=158bp
GTNRPAAFLEVKVEDFDHVMGLNVRAAYFVAQAFAQRLVAVKRPGSIVNV
SSQMGHVGSPRRTVYCATKHAMEGFTKAMGIELAPHGIRVNSIGPTFLDT
PMTRPFFENQAFKADVLSRIKLGRLGTLDEVAAGIVFLASSASGLMTGSA
LVMDGGWT
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mRNA from alignment at P-wetherbeei_contig58306:20..493+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig58306.1.1 ID=mRNA_P-wetherbeei_contig58306.1.1|Name=mRNA_P-wetherbeei_contig58306.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=474bp|location=Sequence derived from alignment at P-wetherbeei_contig58306:20..493+ (Phaeothamnion wetherbeei SAG_119_79)
GGAACCAACCGGCCCGCTGCCTTCCTGGAGGTCAAGGTCGAGGACTTCGA
CCACGTGATGGGACTTAACGTCCGCGCCGCCTACTTCGTCGCCCAGGCCT
TTGCCCAACGGCTCGTCGCGGTGAAACGCCCCGGCTCGATCGTCAACGTC
TCCTCACAGATGGGCCACGTCGGCTCCCCCCGCCGTACTGTCTACTGCGC
CACCAAGCACGCCATGGAGGGCTTCACCAAAGCGATGGGCATCGAACTCG
CCCCGCACGGCATTCGCGTCAACTCCATTGGTCCGACCTTTCTCGATACG
CCGATGACCCGGCCATTCTTCGAGAACCAGGCCTTCAAGGCCGACGTGCT
TTCCCGCATCAAACTCGGCCGGCTGGGCACACTCGACGAAGTCGCGGCCG
GTATCGTGTTCCTCGCCTCGAGCGCCTCGGGGCTGATGACCGGTTCCGCA
CTCGTCATGGACGGCGGCTGGACC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig58306:20..493+

>mRNA_P-wetherbeei_contig58306.1.1 ID=mRNA_P-wetherbeei_contig58306.1.1|Name=mRNA_P-wetherbeei_contig58306.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=474bp|location=Sequence derived from alignment at P-wetherbeei_contig58306:20..493+ (Phaeothamnion wetherbeei SAG_119_79)
GGAACCAACCGGCCCGCTGCCTTCCTGGAGGTCAAGGTCGAGGACTTCGA
CCACGTGATGGGACTTAACGTCCGCGCCGCCTACTTCGTCGCCCAGGCCT
TTGCCCAACGGCTCGTCGCGGTGAAACGCCCCGGCTCGATCGTCAACGTC
TCCTCACAGATGGGCCACGTCGGCTCCCCCCGCCGTACTGTCTACTGCGC
CACCAAGCACGCCATGGAGGGCTTCACCAAAGCGATGGGCATCGAACTCG
CCCCGCACGGCATTCGCGTCAACTCCATTGGTCCGACCTTTCTCGATACG
CCGATGACCCGGCCATTCTTCGAGAACCAGGCCTTCAAGGCCGACGTGCT
TTCCCGCATCAAACTCGGCCGGCTGGGCACACTCGACGAAGTCGCGGCCG
GTATCGTGTTCCTCGCCTCGAGCGCCTCGGGGCTGATGACCGGTTCCGCA
CTCGTCATGGACGGCGGCTGGACC
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