mRNA_P-wetherbeei_contig5830.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig5830.1.1
Unique NamemRNA_P-wetherbeei_contig5830.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig5830.1.1 vs. uniprot
Match: A0A067BFN9_SAPPC (Uncharacterized protein n=1 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067BFN9_SAPPC)

HSP 1 Score: 107 bits (266), Expect = 1.450e-25
Identity = 52/97 (53.61%), Postives = 60/97 (61.86%), Query Frame = 1 
Query:   13 RGLLRHDLDPKAFQEHHNTYCGATD-KAFAGETLGYVTPWNGAGYDFARVFAAKFDYISPCWYQLRNRDGDSAIVLTGGHDVDRDWMTAVRSAAAFG 300
            RGL+       +   H + Y G  D K FAGETLGYVTPWN  GYD A+ F  KF YI+P WYQ+R+ D   A VLTGGHDVD DW+ AVR     G
Sbjct:   53 RGLVTTAPSVASILTHAHAYAGDVDTKRFAGETLGYVTPWNSHGYDTAKTFRRKFTYIAPVWYQIRH-DASRAPVLTGGHDVDADWIAAVRGRDGLG 148
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BLAST of mRNA_P-wetherbeei_contig5830.1.1 vs. uniprot
Match: A0A067BWZ0_SAPPC (GH18 domain-containing protein n=1 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067BWZ0_SAPPC)

HSP 1 Score: 106 bits (265), Expect = 1.820e-25
Identity = 52/97 (53.61%), Postives = 59/97 (60.82%), Query Frame = 1 
Query:   13 RGLLRHDLDPKAFQEHHNTYCGATD-KAFAGETLGYVTPWNGAGYDFARVFAAKFDYISPCWYQLRNRDGDSAIVLTGGHDVDRDWMTAVRSAAAFG 300
            RGL+       +   H   Y G  D K FAGETLGYVTPWN  GYD A+ F  KF YI+P WYQ+R+ D   A VLTGGHDVD DW+ AVR     G
Sbjct:   50 RGLVTTAPSVASILTHAQAYAGDVDTKRFAGETLGYVTPWNSHGYDTAKTFRRKFTYIAPVWYQIRH-DASRAPVLTGGHDVDADWIVAVRGRDGLG 145
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BLAST of mRNA_P-wetherbeei_contig5830.1.1 vs. uniprot
Match: A0A1B0GSH5_MOUSE (Chitinase domain-containing protein 1 n=1 Tax=Mus musculus TaxID=10090 RepID=A0A1B0GSH5_MOUSE)

HSP 1 Score: 100 bits (250), Expect = 1.180e-24
Identity = 48/99 (48.48%), Postives = 62/99 (62.63%), Query Frame = 1 
Query:    1 PAEERGLLRHDLDPKAFQEHHNTYCG--ATDKAFAGETLGYVTPWNGAGYDFARVFAAKFDYISPCWYQLRNRDGDSAIVLTGGHDVDRDWMTAVRSAA 291
            P ++RGL+  D+  +     H +YC   A ++ FAGE LGYVTPWN  GYD A+VF +KF  ISP W QL+ R G     +TG HDVD+ WM AV+  A
Sbjct:   44 PVQDRGLVVTDIKAEDVVLEHRSYCSSRARERNFAGEVLGYVTPWNSHGYDVAKVFGSKFTQISPVWLQLKRR-GREMFEITGLHDVDQGWMRAVKKHA 141
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BLAST of mRNA_P-wetherbeei_contig5830.1.1 vs. uniprot
Match: I3M872_ICTTR (Chitinase domain containing 1 n=4 Tax=Marmotini TaxID=337730 RepID=I3M872_ICTTR)

HSP 1 Score: 103 bits (257), Expect = 1.220e-24
Identity = 49/99 (49.49%), Postives = 63/99 (63.64%), Query Frame = 1 
Query:    1 PAEERGLLRHDLDPKAFQEHHNTYCGAT--DKAFAGETLGYVTPWNGAGYDFARVFAAKFDYISPCWYQLRNRDGDSAIVLTGGHDVDRDWMTAVRSAA 291
            P ++RGL+  DL  +     H +YC A   ++ FAG+ LGYVTPWN  GYD A+VF +KF +ISP W QL+ R G     +TG HDVD+ WM AVR  A
Sbjct:   47 PVQDRGLVVTDLKAEVVVLEHRSYCSARARERNFAGDVLGYVTPWNSHGYDIAKVFGSKFTHISPVWLQLKRR-GREMFEVTGLHDVDQGWMRAVRKHA 144
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BLAST of mRNA_P-wetherbeei_contig5830.1.1 vs. uniprot
Match: A0A2D4CDD7_PYTIN (GH18 domain-containing protein (Fragment) n=2 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4CDD7_PYTIN)

HSP 1 Score: 105 bits (262), Expect = 2.250e-24
Identity = 47/96 (48.96%), Postives = 59/96 (61.46%), Query Frame = 1 
Query:   13 RGLLRHDLDPKAFQEHHNTYCGATDKAFAGETLGYVTPWNGAGYDFARVFAAKFDYISPCWYQLRNRDGDSAIVLTGGHDVDRDWMTAVRSAAAFG 300
            RGL+      +   + H+       +AF GETLGYVTPWNGAGYD A+ F AKF YI+P W+Q+R        +LTG HD+DRDW+ AVR   A G
Sbjct:  268 RGLVTTKPKIRDILKEHSRTADPELRAFTGETLGYVTPWNGAGYDVAKTFRAKFSYIAPVWFQIREDPKSRTPILTGTHDIDRDWIAAVRRPVASG 363
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BLAST of mRNA_P-wetherbeei_contig5830.1.1 vs. uniprot
Match: A0A5K1VTB8_CALJA (Chitinase domain containing 1 n=1 Tax=Callithrix jacchus TaxID=9483 RepID=A0A5K1VTB8_CALJA)

HSP 1 Score: 103 bits (256), Expect = 3.700e-24
Identity = 49/99 (49.49%), Postives = 62/99 (62.63%), Query Frame = 1 
Query:    1 PAEERGLLRHDLDPKAFQEHHNTYCGAT--DKAFAGETLGYVTPWNGAGYDFARVFAAKFDYISPCWYQLRNRDGDSAIVLTGGHDVDRDWMTAVRSAA 291
            P ++RGL+  DL  +     H +YC A   D+ FAG+ LGYVTPWN  GYD  +VFA+KF  ISP W QL+ R G     +TG HDVD+ WM A+R  A
Sbjct:   44 PVQDRGLVVSDLKAEDVVLEHRSYCSAEARDRHFAGDVLGYVTPWNSRGYDVTKVFASKFTQISPVWLQLKRR-GREMFEVTGLHDVDQGWMRAIRKHA 141
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BLAST of mRNA_P-wetherbeei_contig5830.1.1 vs. uniprot
Match: CHID1_PONAB (Chitinase domain-containing protein 1 n=20 Tax=Catarrhini TaxID=9526 RepID=CHID1_PONAB)

HSP 1 Score: 103 bits (257), Expect = 3.770e-24
Identity = 50/99 (50.51%), Postives = 62/99 (62.63%), Query Frame = 1 
Query:    1 PAEERGLLRHDLDPKAFQEHHNTYCGAT--DKAFAGETLGYVTPWNGAGYDFARVFAAKFDYISPCWYQLRNRDGDSAIVLTGGHDVDRDWMTAVRSAA 291
            P +ERGL+  DL  ++    H +YC A   D+ FAG+ LGYVTPWN  GYD  +VF +KF  ISP W QL+ R G     +TG HDVD+ WM AVR  A
Sbjct:   44 PVQERGLVVTDLKAESVVLEHRSYCSAKARDRHFAGDVLGYVTPWNSHGYDVTKVFGSKFTQISPVWLQLKRR-GREMFEVTGLHDVDQGWMRAVRKHA 141
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BLAST of mRNA_P-wetherbeei_contig5830.1.1 vs. uniprot
Match: A0A2K6REM8_RHIRO (Chitinase domain containing 1 n=3 Tax=Colobinae TaxID=9569 RepID=A0A2K6REM8_RHIRO)

HSP 1 Score: 102 bits (253), Expect = 4.490e-24
Identity = 48/99 (48.48%), Postives = 62/99 (62.63%), Query Frame = 1 
Query:    1 PAEERGLLRHDLDPKAFQEHHNTYCGAT--DKAFAGETLGYVTPWNGAGYDFARVFAAKFDYISPCWYQLRNRDGDSAIVLTGGHDVDRDWMTAVRSAA 291
            P ++RGL+  DL  ++    H +YC A   D+ FAG+ LGYVTPWN  GYD  +VF +KF  ISP W QL+ R G     +TG HDVD+ WM A+R  A
Sbjct:   44 PVQDRGLVVTDLKAESVVLEHRSYCSAKARDRHFAGDVLGYVTPWNSHGYDVTKVFGSKFTQISPVWLQLKRR-GREMFEVTGLHDVDQGWMRAIRKNA 141
[Close]
BLAST of mRNA_P-wetherbeei_contig5830.1.1 vs. uniprot
Match: UPI001FB08D09 (chitinase domain-containing protein 1 isoform X10 n=1 Tax=Homo sapiens TaxID=9606 RepID=UPI001FB08D09)

HSP 1 Score: 102 bits (254), Expect = 4.660e-24
Identity = 49/99 (49.49%), Postives = 62/99 (62.63%), Query Frame = 1 
Query:    1 PAEERGLLRHDLDPKAFQEHHNTYCGAT--DKAFAGETLGYVTPWNGAGYDFARVFAAKFDYISPCWYQLRNRDGDSAIVLTGGHDVDRDWMTAVRSAA 291
            P ++RGL+  DL  ++    H +YC A   D+ FAG+ LGYVTPWN  GYD  +VF +KF  ISP W QL+ R G     +TG HDVD+ WM AVR  A
Sbjct:   44 PVQDRGLVVTDLKAESVVLEHRSYCSAKARDRHFAGDVLGYVTPWNSHGYDVTKVFGSKFTQISPVWLQLKRR-GREMFEVTGLHDVDQGWMRAVRKHA 141
[Close]
BLAST of mRNA_P-wetherbeei_contig5830.1.1 vs. uniprot
Match: UPI0004D06BAF (chitinase domain-containing protein 1 isoform X1 n=1 Tax=Galeopterus variegatus TaxID=482537 RepID=UPI0004D06BAF)

HSP 1 Score: 103 bits (256), Expect = 5.700e-24
Identity = 50/99 (50.51%), Postives = 62/99 (62.63%), Query Frame = 1 
Query:    1 PAEERGLLRHDLDPKAFQEHHNTYCGAT--DKAFAGETLGYVTPWNGAGYDFARVFAAKFDYISPCWYQLRNRDGDSAIVLTGGHDVDRDWMTAVRSAA 291
            P ++RGL+  DL  +     H +YC A   D+ FAG+ LGYVTPWN  GYD A+VF +KF  ISP W QL+ R G     +TG HDVD+ WM AVR  A
Sbjct:   47 PVQDRGLVVTDLKAEDVVLEHRSYCSARAQDRHFAGDVLGYVTPWNSHGYDIAKVFGSKFTQISPVWLQLKRR-GREMFEVTGLHDVDQGWMRAVRKHA 144
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig5830.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A067BFN9_SAPPC1.450e-2553.61Uncharacterized protein n=1 Tax=Saprolegnia parasi... [more]
A0A067BWZ0_SAPPC1.820e-2553.61GH18 domain-containing protein n=1 Tax=Saprolegnia... [more]
A0A1B0GSH5_MOUSE1.180e-2448.48Chitinase domain-containing protein 1 n=1 Tax=Mus ... [more]
I3M872_ICTTR1.220e-2449.49Chitinase domain containing 1 n=4 Tax=Marmotini Ta... [more]
A0A2D4CDD7_PYTIN2.250e-2448.96GH18 domain-containing protein (Fragment) n=2 Tax=... [more]
A0A5K1VTB8_CALJA3.700e-2449.49Chitinase domain containing 1 n=1 Tax=Callithrix j... [more]
CHID1_PONAB3.770e-2450.51Chitinase domain-containing protein 1 n=20 Tax=Cat... [more]
A0A2K6REM8_RHIRO4.490e-2448.48Chitinase domain containing 1 n=3 Tax=Colobinae Ta... [more]
UPI001FB08D094.660e-2449.49chitinase domain-containing protein 1 isoform X10 ... [more]
UPI0004D06BAF5.700e-2450.51chitinase domain-containing protein 1 isoform X1 n... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig5830contigP-wetherbeei_contig5830:148..579 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog43179.ENSSTOP00000005894
Preferred nameCHID1
PFAMsGlyco_hydro_18
Model size300
Max annot lvl33208|Metazoa
KEGG koko:K17525
Hectar predicted targeting categoryother localisation
GOsGO:0000323,GO:0001817,GO:0001818,GO:0002576,GO:0003674,GO:0003824,GO:0004553,GO:0004568,GO:0005488,GO:0005575,GO:0005576,GO:0005615,GO:0005622,GO:0005623,GO:0005737,GO:0005764,GO:0005768,GO:0005770,GO:0005773,GO:0005775,GO:0005794,GO:0005802,GO:0006022,GO:0006026,GO:0006030,GO:0006032,GO:0006040,GO:0006807,GO:0006810,GO:0006887,GO:0006950,GO:0006952,GO:0006954,GO:0008061,GO:0008144,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009987,GO:0012505,GO:0016192,GO:0016787,GO:0016798,GO:0017144,GO:0030246,GO:0031347,GO:0031348,GO:0031410,GO:0031974,GO:0031982,GO:0031984,GO:0032101,GO:0032102,GO:0032940,GO:0042737,GO:0043170,GO:0043202,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044237,GO:0044248,GO:0044421,GO:0044422,GO:0044424,GO:0044431,GO:0044437,GO:0044444,GO:0044446,GO:0044464,GO:0045055,GO:0046348,GO:0046903,GO:0048519,GO:0048583,GO:0048585,GO:0050727,GO:0050728,GO:0050789,GO:0050896,GO:0051179,GO:0051234,GO:0051239,GO:0051241,GO:0065007,GO:0070013,GO:0070492,GO:0071704,GO:0080134,GO:0097367,GO:0097708,GO:0098791,GO:1900015,GO:1900016,GO:1901071,GO:1901072,GO:1901135,GO:1901136,GO:1901564,GO:1901565,GO:1901575
Exons2
Evalue6.19e-25
EggNOG OGsKOG2091@1|root,KOG2091@2759|Eukaryota,38HBY@33154|Opisthokonta,3BGA0@33208|Metazoa,3CRXI@33213|Bilateria,481IA@7711|Chordata,48Z8N@7742|Vertebrata,3J6X7@40674|Mammalia,35MX0@314146|Euarchontoglires,4PV8T@9989|Rodentia
DescriptionChitinase domain-containing protein 1
Cds size300
COG categoryG
CAZyGH18
BRITEko00000,ko04091
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186863.7870204-CDS-P-wetherbeei_contig5830:147..3081683186863.7870204-CDS-P-wetherbeei_contig5830:147..308Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5830 148..308 -
1683186863.802633-CDS-P-wetherbeei_contig5830:440..5791683186863.802633-CDS-P-wetherbeei_contig5830:440..579Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5830 441..579 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig5830.1.1prot_P-wetherbeei_contig5830.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig5830 148..579 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig5830.1.1

>prot_P-wetherbeei_contig5830.1.1 ID=prot_P-wetherbeei_contig5830.1.1|Name=mRNA_P-wetherbeei_contig5830.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=100bp
PAEERGLLRHDLDPKAFQEHHNTYCGATDKAFAGETLGYVTPWNGAGYDF
ARVFAAKFDYISPCWYQLRNRDGDSAIVLTGGHDVDRDWMTAVRSAAAFG
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mRNA from alignment at P-wetherbeei_contig5830:148..579-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig5830.1.1 ID=mRNA_P-wetherbeei_contig5830.1.1|Name=mRNA_P-wetherbeei_contig5830.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=432bp|location=Sequence derived from alignment at P-wetherbeei_contig5830:148..579- (Phaeothamnion wetherbeei SAG_119_79)
CCTGCCGAAGAACGAGGGCTGCTGAGGCACGACCTTGACCCAAAAGCTTT
CCAAGAGCATCACAACACGTACTGCGGCGCCACCGATAAGGCATTTGCGG
GCGAGACGCTGGGTTACGTAACGCCATGGAACGGCGCAGGTAGAGAACCC
CAACACTTCTTGTTACAGTATGCAGGAAGACGGTTGTGATTTTGCTCCGA
TGATATCATGAATTTCTCCTTACTTCGTTCTTGTCCAACCTCTCAAACCT
TGAACACCCGCACGTTCACAGGCTACGACTTCGCCCGCGTGTTCGCTGCC
AAGTTTGACTACATATCGCCATGCTGGTACCAACTGAGAAACCGCGACGG
GGACAGCGCTATTGTGCTGACCGGCGGCCACGACGTCGACAGAGATTGGA
TGACCGCCGTCCGATCCGCCGCCGCATTCGGC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig5830:148..579-

>mRNA_P-wetherbeei_contig5830.1.1 ID=mRNA_P-wetherbeei_contig5830.1.1|Name=mRNA_P-wetherbeei_contig5830.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=300bp|location=Sequence derived from alignment at P-wetherbeei_contig5830:148..579- (Phaeothamnion wetherbeei SAG_119_79)
CCTGCCGAAGAACGAGGGCTGCTGAGGCACGACCTTGACCCAAAAGCTTT
CCAAGAGCATCACAACACGTACTGCGGCGCCACCGATAAGGCATTTGCGG
GCGAGACGCTGGGTTACGTAACGCCATGGAACGGCGCAGGCTACGACTTC
GCCCGCGTGTTCGCTGCCAAGTTTGACTACATATCGCCATGCTGGTACCA
ACTGAGAAACCGCGACGGGGACAGCGCTATTGTGCTGACCGGCGGCCACG
ACGTCGACAGAGATTGGATGACCGCCGTCCGATCCGCCGCCGCATTCGGC
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