mRNA_P-wetherbeei_contig58282.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig58282.1.1
Unique NamemRNA_P-wetherbeei_contig58282.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig58282.1.1 vs. uniprot
Match: A0A848H698_9BURK (Tetratricopeptide repeat protein n=2 Tax=Ramlibacter agri TaxID=2728837 RepID=A0A848H698_9BURK)

HSP 1 Score: 58.2 bits (139), Expect = 4.570e-8
Identity = 36/75 (48.00%), Postives = 45/75 (60.00%), Query Frame = 1 
Query:   16 DATVHLNLGFALLEQQQFDAARLSLGEAVRLDARN----HEAHFLLARAQRATGDAQAALQSYARVLGLQPDFGE 228
            D+ + LNLGFALLEQ +F+ A   L EA+ L   +    HEAH+LLARA RA G    AL+S    L   P+F E
Sbjct:   50 DSALRLNLGFALLEQGEFEGACRRLNEALSLRRPDEDFAHEAHYLLARAHRAAGRPAEALRSCEAALEAAPEFAE 124
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BLAST of mRNA_P-wetherbeei_contig58282.1.1 vs. uniprot
Match: A0A7X2TVD8_9BACT (Tetratricopeptide repeat protein n=1 Tax=Bryobacterales bacterium TaxID=2026791 RepID=A0A7X2TVD8_9BACT)

HSP 1 Score: 49.7 bits (117), Expect = 4.520e-5
Identity = 31/72 (43.06%), Postives = 42/72 (58.33%), Query Frame = 1 
Query:    1 EAMPGDATVHLNLGFALLEQQQFDAARLSLGEAVRLDARNHEAHFLLARAQRATGDAQAALQSYARVLGLQP 216
            EA PG A   LN+G AL+++ + DAAR  + +A+ L       HF LA  Q+A+GD   ALQS  R +G  P
Sbjct:  701 EAEPGYADGWLNVGRALIQEGETDAARPFVEKALSLQPDLARGHFFLAMIQKASGDYTGALQSLNRTVGQYP 772
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig58282.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A848H698_9BURK4.570e-848.00Tetratricopeptide repeat protein n=2 Tax=Ramlibact... [more]
A0A7X2TVD8_9BACT4.520e-543.06Tetratricopeptide repeat protein n=1 Tax=Bryobacte... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig58282contigP-wetherbeei_contig58282:11..244 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog649638.Trad_2729
PFAMsANAPC3,TPR_16,TPR_19,TPR_2,TPR_4,TPR_6,TPR_8
Model size234
Max annot lvl1297|Deinococcus-Thermus
Hectar predicted targeting categoryother localisation
Exons1
Evalue0.000211
EggNOG OGsCOG0457@1|root,COG0457@2|Bacteria,1WJ9W@1297|Deinococcus-Thermus
DescriptionPFAM Tetratricopeptide repeat
Cds size228
COG categoryS
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186863.249355-UTR-P-wetherbeei_contig58282:10..161683186863.249355-UTR-P-wetherbeei_contig58282:10..16Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig58282 11..16 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186863.264034-CDS-P-wetherbeei_contig58282:16..2441683186863.264034-CDS-P-wetherbeei_contig58282:16..244Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig58282 17..244 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig58282.1.1prot_P-wetherbeei_contig58282.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig58282 17..244 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig58282.1.1

>prot_P-wetherbeei_contig58282.1.1 ID=prot_P-wetherbeei_contig58282.1.1|Name=mRNA_P-wetherbeei_contig58282.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=76bp
MPGDATVHLNLGFALLEQQQFDAARLSLGEAVRLDARNHEAHFLLARAQR
ATGDAQAALQSYARVLGLQPDFGEAA
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mRNA from alignment at P-wetherbeei_contig58282:11..244+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig58282.1.1 ID=mRNA_P-wetherbeei_contig58282.1.1|Name=mRNA_P-wetherbeei_contig58282.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=234bp|location=Sequence derived from alignment at P-wetherbeei_contig58282:11..244+ (Phaeothamnion wetherbeei SAG_119_79)
GAAGCCATGCCGGGCGATGCGACGGTGCACCTGAACCTCGGATTCGCCTT
GCTGGAGCAGCAGCAGTTCGACGCTGCCCGCCTGAGCCTGGGCGAGGCGG
TCCGGCTCGATGCGCGCAACCATGAAGCGCATTTCCTGCTGGCCCGGGCC
CAGCGCGCCACCGGGGACGCCCAGGCGGCACTGCAGTCGTATGCGCGGGT
GCTCGGCCTGCAACCGGACTTCGGCGAGGCGGCG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig58282:11..244+

>mRNA_P-wetherbeei_contig58282.1.1 ID=mRNA_P-wetherbeei_contig58282.1.1|Name=mRNA_P-wetherbeei_contig58282.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=228bp|location=Sequence derived from alignment at P-wetherbeei_contig58282:11..244+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCCGGGCGATGCGACGGTGCACCTGAACCTCGGATTCGCCTTGCTGGA
GCAGCAGCAGTTCGACGCTGCCCGCCTGAGCCTGGGCGAGGCGGTCCGGC
TCGATGCGCGCAACCATGAAGCGCATTTCCTGCTGGCCCGGGCCCAGCGC
GCCACCGGGGACGCCCAGGCGGCACTGCAGTCGTATGCGCGGGTGCTCGG
CCTGCAACCGGACTTCGGCGAGGCGGCG
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