mRNA_P-wetherbeei_contig5824.3.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig5824.3.1
Unique NamemRNA_P-wetherbeei_contig5824.3.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig5824.3.1 vs. uniprot
Match: A0A259MRV3_9PROT (4-carboxymuconolactone decarboxylase n=5 Tax=Alphaproteobacteria TaxID=28211 RepID=A0A259MRV3_9PROT)

HSP 1 Score: 257 bits (656), Expect = 3.140e-86
Identity = 126/139 (90.65%), Postives = 134/139 (96.40%), Query Frame = 1
Query:   10 AKAKAKKAKPNPRNKKLYDDGMKMRKAVLGAAYVDNSLAGAANDDFMMAFQDITTEYCWGYAWTRPGLSKKSRSMLNLAMLAALNRGPELKLHINGALNNGLTKEEIKEIFLQVAIYCGIPASLDAFKTASGVFKERGI 426
            A  KAKKAKP PRNKKLYD+GMKMRKAVLGAAYV+NSLAGAA+D+FMMAFQDITTEYCWGYAWTRPGLSKK+RSMLNLAMLAALNRGPELKLHINGALNNGLTK+EIKEIFLQVAIYCGIPASLDAFKTA  VFK+RG+
Sbjct:    6 AVTKAKKAKPAPRNKKLYDEGMKMRKAVLGAAYVENSLAGAADDEFMMAFQDITTEYCWGYAWTRPGLSKKNRSMLNLAMLAALNRGPELKLHINGALNNGLTKDEIKEIFLQVAIYCGIPASLDAFKTARDVFKDRGV 144          
BLAST of mRNA_P-wetherbeei_contig5824.3.1 vs. uniprot
Match: A0A521KWP2_9HYPH (4-carboxymuconolactone decarboxylase n=2 Tax=Alphaproteobacteria TaxID=28211 RepID=A0A521KWP2_9HYPH)

HSP 1 Score: 256 bits (655), Expect = 4.460e-86
Identity = 129/143 (90.21%), Postives = 135/143 (94.41%), Query Frame = 1
Query:   10 AKAKAKKAK----PNPRNKKLYDDGMKMRKAVLGAAYVDNSLAGAANDDFMMAFQDITTEYCWGYAWTRPGLSKKSRSMLNLAMLAALNRGPELKLHINGALNNGLTKEEIKEIFLQVAIYCGIPASLDAFKTASGVFKERGI 426
            AKAKA+KA     P PRNKKLYDDGMK+RKAVLGAAYVDNSLAGAAND+FMMAFQDITTEYCWGYAWTRPGLSKKSRSMLNLAMLAALNRGPELKLHINGALNNGL+K+EIKEIFLQVAIYCGIPASLDAFKTA  VFKERG+
Sbjct:    2 AKAKAQKAXXXXXPQPRNKKLYDDGMKVRKAVLGAAYVDNSLAGAANDEFMMAFQDITTEYCWGYAWTRPGLSKKSRSMLNLAMLAALNRGPELKLHINGALNNGLSKDEIKEIFLQVAIYCGIPASLDAFKTARDVFKERGV 144          
BLAST of mRNA_P-wetherbeei_contig5824.3.1 vs. uniprot
Match: A0A1H8UBG2_9PROT (4-carboxymuconolactone decarboxylase n=3 Tax=Alphaproteobacteria TaxID=28211 RepID=A0A1H8UBG2_9PROT)

HSP 1 Score: 253 bits (645), Expect = 1.350e-84
Identity = 126/142 (88.73%), Postives = 134/142 (94.37%), Query Frame = 1
Query:    1 MAAAKAKAKKAKPNPRNKKLYDDGMKMRKAVLGAAYVDNSLAGAANDDFMMAFQDITTEYCWGYAWTRPGLSKKSRSMLNLAMLAALNRGPELKLHINGALNNGLTKEEIKEIFLQVAIYCGIPASLDAFKTASGVFKERGI 426
            MA AKA A+KAKPNPRNKKLYDDGMK+RKAVLGA+YVDNSLA AA DDFMM+FQDITTEY WGY WTRPGL KK+RSMLNLAMLAALNRGPELKLH+NGALNNGL+KEEIKEIFLQVAIYCGIPASLDAFK ASGVFKERG+
Sbjct:    1 MAKAKA-ARKAKPNPRNKKLYDDGMKVRKAVLGASYVDNSLANAAMDDFMMSFQDITTEYAWGYVWTRPGLPKKTRSMLNLAMLAALNRGPELKLHVNGALNNGLSKEEIKEIFLQVAIYCGIPASLDAFKIASGVFKERGV 141          
BLAST of mRNA_P-wetherbeei_contig5824.3.1 vs. uniprot
Match: A0A521LUT1_9HYPH (4-carboxymuconolactone decarboxylase n=1 Tax=Reyranella sp. TaxID=1929291 RepID=A0A521LUT1_9HYPH)

HSP 1 Score: 250 bits (638), Expect = 1.420e-83
Identity = 122/139 (87.77%), Postives = 131/139 (94.24%), Query Frame = 1
Query:   10 AKAKAKKAKPNPRNKKLYDDGMKMRKAVLGAAYVDNSLAGAANDDFMMAFQDITTEYCWGYAWTRPGLSKKSRSMLNLAMLAALNRGPELKLHINGALNNGLTKEEIKEIFLQVAIYCGIPASLDAFKTASGVFKERGI 426
            AKAKAKKAKPNPRNKKLYDDGMK+RKAVLG+AYVDNS+A A  DDFMM+FQD+TTEYCWGY W+RPGLSKK+RSMLNLAMLAALNRGPELKLH+NGAL NGLTKEEIKEIFLQVAIYCGIPA LDAFKTA  VFKERG+
Sbjct:    2 AKAKAKKAKPNPRNKKLYDDGMKLRKAVLGSAYVDNSMANA--DDFMMSFQDVTTEYCWGYVWSRPGLSKKTRSMLNLAMLAALNRGPELKLHVNGALTNGLTKEEIKEIFLQVAIYCGIPAGLDAFKTARDVFKERGV 138          
BLAST of mRNA_P-wetherbeei_contig5824.3.1 vs. uniprot
Match: A0A521QGM2_9HYPH (4-carboxymuconolactone decarboxylase n=1 Tax=Reyranella sp. TaxID=1929291 RepID=A0A521QGM2_9HYPH)

HSP 1 Score: 246 bits (627), Expect = 9.790e-82
Identity = 120/138 (86.96%), Postives = 129/138 (93.48%), Query Frame = 1
Query:   13 KAKAKKAKPNPRNKKLYDDGMKMRKAVLGAAYVDNSLAGAANDDFMMAFQDITTEYCWGYAWTRPGLSKKSRSMLNLAMLAALNRGPELKLHINGALNNGLTKEEIKEIFLQVAIYCGIPASLDAFKTASGVFKERGI 426
            K+K  KAKPNPRNKKLYD+GMK+RKAVLGA YVDNS+AGA  DDFMM+FQD+TTEYCWGY WTRPGL KK+RSMLNLAMLAALNRGPELKLHINGALNNGLTK+EIKEIFLQVAIYCGIPASLDAFKTA  VFKERG+
Sbjct:   14 KSKXTKAKPNPRNKKLYDEGMKVRKAVLGAGYVDNSMAGA--DDFMMSFQDVTTEYCWGYVWTRPGLPKKARSMLNLAMLAALNRGPELKLHINGALNNGLTKDEIKEIFLQVAIYCGIPASLDAFKTARDVFKERGV 149          
BLAST of mRNA_P-wetherbeei_contig5824.3.1 vs. uniprot
Match: A0A537N7I2_9PROT (4-carboxymuconolactone decarboxylase n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A537N7I2_9PROT)

HSP 1 Score: 240 bits (613), Expect = 9.230e-80
Identity = 116/139 (83.45%), Postives = 127/139 (91.37%), Query Frame = 1
Query:   10 AKAKAKKAKPNPRNKKLYDDGMKMRKAVLGAAYVDNSLAGAANDDFMMAFQDITTEYCWGYAWTRPGLSKKSRSMLNLAMLAALNRGPELKLHINGALNNGLTKEEIKEIFLQVAIYCGIPASLDAFKTASGVFKERGI 426
            AKA A KAKPNPRNKKLYD+GMKMRKAVLGA+YVD S+A A  DDFMM+FQD+ TEYCWGY WTRPGL+KK+RSMLNLAMLA LNRGPELKLH+NGALNNGL+KEEIKE+FLQVAIYCGIPA LDAFKTA  VFKERG+
Sbjct:    2 AKAAANKAKPNPRNKKLYDEGMKMRKAVLGASYVDTSMASA--DDFMMSFQDVATEYCWGYVWTRPGLNKKTRSMLNLAMLATLNRGPELKLHVNGALNNGLSKEEIKEVFLQVAIYCGIPAGLDAFKTARDVFKERGV 138          
BLAST of mRNA_P-wetherbeei_contig5824.3.1 vs. uniprot
Match: A0A1T4PTM5_9HYPH (4-carboxymuconolactone decarboxylase n=2 Tax=Alphaproteobacteria TaxID=28211 RepID=A0A1T4PTM5_9HYPH)

HSP 1 Score: 240 bits (613), Expect = 1.050e-79
Identity = 121/144 (84.03%), Postives = 132/144 (91.67%), Query Frame = 1
Query:    1 MAAAKAK--AKKAKPNPRNKKLYDDGMKMRKAVLGAAYVDNSLAGAANDDFMMAFQDITTEYCWGYAWTRPGLSKKSRSMLNLAMLAALNRGPELKLHINGALNNGLTKEEIKEIFLQVAIYCGIPASLDAFKTASGVFKERGI 426
            MA AKAK  AKK+KPNPRN+KLYD+GMK+RKAVLG+AYVDNS+A A  DDFMMAFQD+TTEYCWGY WTRPGL KK+RSMLNLAMLAALNRGPELKLHINGAL NGL+K+EIKEIFLQVAIYCGIPASLDAFK A  VFKERG+
Sbjct:    1 MAKAKAKTAAKKSKPNPRNRKLYDEGMKVRKAVLGSAYVDNSVASA--DDFMMAFQDVTTEYCWGYVWTRPGLPKKTRSMLNLAMLAALNRGPELKLHINGALTNGLSKDEIKEIFLQVAIYCGIPASLDAFKIARDVFKERGL 142          
BLAST of mRNA_P-wetherbeei_contig5824.3.1 vs. uniprot
Match: A0A5C8PMW7_9HYPH (4-carboxymuconolactone decarboxylase n=2 Tax=Hyphomicrobiales TaxID=356 RepID=A0A5C8PMW7_9HYPH)

HSP 1 Score: 209 bits (531), Expect = 3.200e-67
Identity = 106/143 (74.13%), Postives = 119/143 (83.22%), Query Frame = 1
Query:    1 MAAAKAKAK-KAKPNPRNKKLYDDGMKMRKAVLGAAYVDNSLAGAANDDFMMAFQDITTEYCWGYAWTRPGLSKKSRSMLNLAMLAALNRGPELKLHINGALNNGLTKEEIKEIFLQVAIYCGIPASLDAFKTASGVFKERGI 426
            MA +K K + K KP P N K++  G+++RKAVLG  YV+NSLA A  DDFMMAFQ+ITTEYCWGY W R GL KK+RSMLNLAMLAALNRGPELKLHINGAL NG+TKEE+KEIFLQV IYCGIPA LDAFKTA  VFKERG+
Sbjct:    1 MAKSKVKPQSKPKPKPANPKVFKKGLEIRKAVLGKEYVENSLANA--DDFMMAFQEITTEYCWGYVWGRDGLPKKTRSMLNLAMLAALNRGPELKLHINGALTNGVTKEEMKEIFLQVGIYCGIPACLDAFKTAKDVFKERGV 141          
BLAST of mRNA_P-wetherbeei_contig5824.3.1 vs. uniprot
Match: A0A380W4D8_AFIFE (4-carboxymuconolactone decarboxylase n=1 Tax=Afipia felis TaxID=1035 RepID=A0A380W4D8_AFIFE)

HSP 1 Score: 192 bits (488), Expect = 9.950e-61
Identity = 94/123 (76.42%), Postives = 105/123 (85.37%), Query Frame = 1
Query:   58 LYDDGMKMRKAVLGAAYVDNSLAGAANDDFMMAFQDITTEYCWGYAWTRPGLSKKSRSMLNLAMLAALNRGPELKLHINGALNNGLTKEEIKEIFLQVAIYCGIPASLDAFKTASGVFKERGI 426
            L+  G++ RK V GAA VD  LAGA  D+FMMAFQD+TTEYCWGY W+RPGLSKK+RSMLNLAMLAALNRGPEL LHI GAL NG++KEEIKEI LQV IYCG+PASLDAFK AS VFKERG+
Sbjct:   17 LFKKGLQTRKEVQGAASVDKVLAGA--DEFMMAFQDLTTEYCWGYVWSRPGLSKKTRSMLNLAMLAALNRGPELSLHIAGALTNGVSKEEIKEILLQVGIYCGVPASLDAFKRASDVFKERGV 137          
BLAST of mRNA_P-wetherbeei_contig5824.3.1 vs. uniprot
Match: D4XGY4_9BURK (Putative 4-carboxymuconolactone decarboxylase n=37 Tax=Alcaligenaceae TaxID=506 RepID=D4XGY4_9BURK)

HSP 1 Score: 179 bits (453), Expect = 4.710e-55
Identity = 86/122 (70.49%), Postives = 100/122 (81.97%), Query Frame = 1
Query:   58 LYDDGMKMRKAVLGAAYVDNSLAGAANDDFMMAFQDITTEYCWGYAWTRPGLSKKSRSMLNLAMLAALNRGPELKLHINGALNNGLTKEEIKEIFLQVAIYCGIPASLDAFKTASGVFKERG 423
            L+D+G+K+R+ VLGA YVD SLA A  +DFMMAFQ ITTE+CWGYAW RPGL KK+RSMLNLAML ALNR  E+KLH+ GALNNG+T EEIKEI LQ  +YCGIPA LDAFK A+ V +E G
Sbjct:   36 LFDEGLKLRREVLGAEYVDGSLARA--NDFMMAFQHITTEWCWGYAWGRPGLEKKTRSMLNLAMLTALNRPAEIKLHVKGALNNGVTVEEIKEILLQATVYCGIPAGLDAFKVANQVLEEEG 155          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig5824.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A259MRV3_9PROT3.140e-8690.654-carboxymuconolactone decarboxylase n=5 Tax=Alpha... [more]
A0A521KWP2_9HYPH4.460e-8690.214-carboxymuconolactone decarboxylase n=2 Tax=Alpha... [more]
A0A1H8UBG2_9PROT1.350e-8488.734-carboxymuconolactone decarboxylase n=3 Tax=Alpha... [more]
A0A521LUT1_9HYPH1.420e-8387.774-carboxymuconolactone decarboxylase n=1 Tax=Reyra... [more]
A0A521QGM2_9HYPH9.790e-8286.964-carboxymuconolactone decarboxylase n=1 Tax=Reyra... [more]
A0A537N7I2_9PROT9.230e-8083.454-carboxymuconolactone decarboxylase n=1 Tax=Alpha... [more]
A0A1T4PTM5_9HYPH1.050e-7984.034-carboxymuconolactone decarboxylase n=2 Tax=Alpha... [more]
A0A5C8PMW7_9HYPH3.200e-6774.134-carboxymuconolactone decarboxylase n=2 Tax=Hypho... [more]
A0A380W4D8_AFIFE9.950e-6176.424-carboxymuconolactone decarboxylase n=1 Tax=Afipi... [more]
D4XGY4_9BURK4.710e-5570.49Putative 4-carboxymuconolactone decarboxylase n=37... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig5824contigP-wetherbeei_contig5824:2114..2542 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog1205680.CAKO01000040_gene723
PFAMsCMD
Model size429
Max annot lvl204441|Rhodospirillales
Hectar predicted targeting categoryother localisation
Exons1
Evalue7.73e-82
EggNOG OGsCOG0599@1|root,COG0599@2|Bacteria,1RJU6@1224|Proteobacteria,2U5JQ@28211|Alphaproteobacteria,2JSN6@204441|Rhodospirillales
DescriptionCarboxymuconolactone decarboxylase family
Cds size429
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186862.8938472-CDS-P-wetherbeei_contig5824:2113..25421683186862.8938472-CDS-P-wetherbeei_contig5824:2113..2542Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5824 2114..2542 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig5824.3.1prot_P-wetherbeei_contig5824.3.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig5824 2114..2542 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig5824.3.1

>prot_P-wetherbeei_contig5824.3.1 ID=prot_P-wetherbeei_contig5824.3.1|Name=mRNA_P-wetherbeei_contig5824.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=143bp
MAAAKAKAKKAKPNPRNKKLYDDGMKMRKAVLGAAYVDNSLAGAANDDFM
MAFQDITTEYCWGYAWTRPGLSKKSRSMLNLAMLAALNRGPELKLHINGA
LNNGLTKEEIKEIFLQVAIYCGIPASLDAFKTASGVFKERGI*
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mRNA from alignment at P-wetherbeei_contig5824:2114..2542+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig5824.3.1 ID=mRNA_P-wetherbeei_contig5824.3.1|Name=mRNA_P-wetherbeei_contig5824.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=429bp|location=Sequence derived from alignment at P-wetherbeei_contig5824:2114..2542+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGCTGCGGCCAAAGCTAAAGCGAAGAAAGCCAAACCCAACCCGCGCAA CAAGAAGCTGTACGACGACGGCATGAAGATGCGCAAAGCCGTGCTTGGTG CGGCTTACGTCGACAACTCGCTGGCCGGCGCCGCCAACGACGACTTCATG ATGGCGTTCCAGGACATCACGACCGAGTATTGCTGGGGCTATGCCTGGAC GCGGCCGGGCCTCTCGAAGAAGTCGCGCTCGATGCTGAACCTCGCGATGC TGGCGGCGCTGAACCGTGGCCCCGAGCTCAAGCTCCATATCAACGGTGCG CTGAACAACGGTCTGACCAAGGAAGAGATCAAGGAAATCTTCCTGCAGGT CGCGATCTATTGCGGCATTCCGGCCAGCCTCGACGCCTTCAAGACGGCGA GCGGCGTGTTCAAGGAACGCGGCATCTAA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig5824:2114..2542+

>mRNA_P-wetherbeei_contig5824.3.1 ID=mRNA_P-wetherbeei_contig5824.3.1|Name=mRNA_P-wetherbeei_contig5824.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=429bp|location=Sequence derived from alignment at P-wetherbeei_contig5824:2114..2542+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGCTGCGGCCAAAGCTAAAGCGAAGAAAGCCAAACCCAACCCGCGCAA
CAAGAAGCTGTACGACGACGGCATGAAGATGCGCAAAGCCGTGCTTGGTG
CGGCTTACGTCGACAACTCGCTGGCCGGCGCCGCCAACGACGACTTCATG
ATGGCGTTCCAGGACATCACGACCGAGTATTGCTGGGGCTATGCCTGGAC
GCGGCCGGGCCTCTCGAAGAAGTCGCGCTCGATGCTGAACCTCGCGATGC
TGGCGGCGCTGAACCGTGGCCCCGAGCTCAAGCTCCATATCAACGGTGCG
CTGAACAACGGTCTGACCAAGGAAGAGATCAAGGAAATCTTCCTGCAGGT
CGCGATCTATTGCGGCATTCCGGCCAGCCTCGACGCCTTCAAGACGGCGA
GCGGCGTGTTCAAGGAACGCGGCATCTAA
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