mRNA_P-wetherbeei_contig58229.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig58229.1.1
Unique NamemRNA_P-wetherbeei_contig58229.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
[Close]
BLAST of mRNA_P-wetherbeei_contig58229.1.1 vs. uniprot
Match: UPI001F2BD431 (hypothetical protein n=1 Tax=Bradyrhizobium sp. G127 TaxID=2904800 RepID=UPI001F2BD431)

HSP 1 Score: 53.1 bits (126), Expect = 4.330e-8
Identity = 30/49 (61.22%), Postives = 38/49 (77.55%), Query Frame = 1 
Query:    1 RLPLVRLRERRRELVLSLQDPSLALTRERIAEIADLQQAINAIEAVIAE 147
            RLPL+ +RERRRELVL LQ    A++ ++I +IA +QQAI AIE VIAE
Sbjct:   20 RLPLIYMRERRRELVLELQTAGPAVSMQKIRDIAAVQQAIKAIETVIAE 68
[Close]
BLAST of mRNA_P-wetherbeei_contig58229.1.1 vs. uniprot
Match: K8P115_9BRAD (Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 TaxID=883078 RepID=K8P115_9BRAD)

HSP 1 Score: 51.2 bits (121), Expect = 2.440e-7
Identity = 30/49 (61.22%), Postives = 37/49 (75.51%), Query Frame = 1 
Query:    1 RLPLVRLRERRRELVLSLQDPSLALTRERIAEIADLQQAINAIEAVIAE 147
            RLPLV LRERRRELV+ +   + AL++  I EIA +QQ I A+EAVIAE
Sbjct:   19 RLPLVLLRERRRELVMQMGSGAPALSKALIQEIAAIQQTIKAVEAVIAE 67
[Close]
BLAST of mRNA_P-wetherbeei_contig58229.1.1 vs. uniprot
Match: A0A4U6BPZ0_9BRAD (Uncharacterized protein n=4 Tax=Bradyrhizobiaceae TaxID=41294 RepID=A0A4U6BPZ0_9BRAD)

HSP 1 Score: 48.9 bits (115), Expect = 2.000e-6
Identity = 28/49 (57.14%), Postives = 37/49 (75.51%), Query Frame = 1 
Query:    1 RLPLVRLRERRRELVLSLQDPSLALTRERIAEIADLQQAINAIEAVIAE 147
            RLPLV LRERRRELV+ +   + ++++  I EIA +QQ I A+EAVIAE
Sbjct:   19 RLPLVLLRERRRELVMQMGSGAPSISKALIQEIAAVQQTIKAVEAVIAE 67
[Close]
BLAST of mRNA_P-wetherbeei_contig58229.1.1 vs. uniprot
Match: UPI001BA52232 (hypothetical protein n=1 Tax=Bradyrhizobium manausense TaxID=989370 RepID=UPI001BA52232)

HSP 1 Score: 49.3 bits (116), Expect = 2.310e-6
Identity = 26/48 (54.17%), Postives = 40/48 (83.33%), Query Frame = 1 
Query:    4 LPLVRLRERRRELVLSLQDPSLALTRERIAEIADLQQAINAIEAVIAE 147
            LPLV+L+ERRRE+V++LQ+   A++ + + +IAD+QQAI+A E VIA+
Sbjct:    9 LPLVQLKERRREMVVALQNRVGAISDDELRQIADIQQAISAFEDVIAD 56
[Close]
BLAST of mRNA_P-wetherbeei_contig58229.1.1 vs. uniprot
Match: F7QPM5_9BRAD (Uncharacterized protein n=3 Tax=Bradyrhizobiaceae TaxID=41294 RepID=F7QPM5_9BRAD)

HSP 1 Score: 47.4 bits (111), Expect = 8.680e-6
Identity = 29/49 (59.18%), Postives = 35/49 (71.43%), Query Frame = 1 
Query:    1 RLPLVRLRERRRELVLSLQDPSLALTRERIAEIADLQQAINAIEAVIAE 147
            RLPLV LRERRRELV+ ++     L+   I EIA +QQ I A+EAVIAE
Sbjct:   22 RLPLVLLRERRRELVMEMRARGPKLSTVLIHEIAAIQQTIKAVEAVIAE 70
[Close]
BLAST of mRNA_P-wetherbeei_contig58229.1.1 vs. uniprot
Match: A0A1V4HU58_NITVU (Uncharacterized protein n=2 Tax=Nitrobacter vulgaris TaxID=29421 RepID=A0A1V4HU58_NITVU)

HSP 1 Score: 46.6 bits (109), Expect = 1.790e-5
Identity = 25/47 (53.19%), Postives = 38/47 (80.85%), Query Frame = 1 
Query:    1 RLPLVRLRERRRELVLSLQDPSLALTRERIAEIADLQQAINAIEAVI 141
            +LPLV+L+ERRR+L++ L      L++++IAEIA +Q AI+AIEAV+
Sbjct:    9 KLPLVQLKERRRDLIVGLMGHQGPLSKQQIAEIAAIQTAISAIEAVL 55
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig58229.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
UPI001F2BD4314.330e-861.22hypothetical protein n=1 Tax=Bradyrhizobium sp. G1... [more]
K8P115_9BRAD2.440e-761.22Uncharacterized protein n=1 Tax=Afipia broomeae AT... [more]
A0A4U6BPZ0_9BRAD2.000e-657.14Uncharacterized protein n=4 Tax=Bradyrhizobiaceae ... [more]
UPI001BA522322.310e-654.17hypothetical protein n=1 Tax=Bradyrhizobium manaus... [more]
F7QPM5_9BRAD8.680e-659.18Uncharacterized protein n=3 Tax=Bradyrhizobiaceae ... [more]
A0A1V4HU58_NITVU1.790e-553.19Uncharacterized protein n=2 Tax=Nitrobacter vulgar... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig58229contigP-wetherbeei_contig58229:279..428 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog1038859.AXAU01000001_gene3604
Model size150
Max annot lvl28211|Alphaproteobacteria
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Evalue8.69e-05
EggNOG OGs29E9N@1|root,3017Q@2|Bacteria,1N6GN@1224|Proteobacteria,2UD18@28211|Alphaproteobacteria,3K0S8@41294|Bradyrhizobiaceae
Cds size150
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186862.6793756-CDS-P-wetherbeei_contig58229:278..4281683186862.6793756-CDS-P-wetherbeei_contig58229:278..428Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig58229 279..428 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig58229.1.1prot_P-wetherbeei_contig58229.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig58229 279..428 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig58229.1.1

>prot_P-wetherbeei_contig58229.1.1 ID=prot_P-wetherbeei_contig58229.1.1|Name=mRNA_P-wetherbeei_contig58229.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=50bp
RLPLVRLRERRRELVLSLQDPSLALTRERIAEIADLQQAINAIEAVIAE*
back to top

mRNA from alignment at P-wetherbeei_contig58229:279..428-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig58229.1.1 ID=mRNA_P-wetherbeei_contig58229.1.1|Name=mRNA_P-wetherbeei_contig58229.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=150bp|location=Sequence derived from alignment at P-wetherbeei_contig58229:279..428- (Phaeothamnion wetherbeei SAG_119_79)
CGCCTCCCGCTCGTTCGATTGCGCGAACGCCGCCGTGAACTCGTCCTGTC
GCTGCAAGACCCGTCGCTTGCGCTCACGCGCGAACGCATCGCGGAAATCG
CGGACCTTCAGCAGGCGATCAACGCAATCGAGGCTGTGATCGCAGAGTAA
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig58229:279..428-

>mRNA_P-wetherbeei_contig58229.1.1 ID=mRNA_P-wetherbeei_contig58229.1.1|Name=mRNA_P-wetherbeei_contig58229.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=150bp|location=Sequence derived from alignment at P-wetherbeei_contig58229:279..428- (Phaeothamnion wetherbeei SAG_119_79)
CGCCTCCCGCTCGTTCGATTGCGCGAACGCCGCCGTGAACTCGTCCTGTC
GCTGCAAGACCCGTCGCTTGCGCTCACGCGCGAACGCATCGCGGAAATCG
CGGACCTTCAGCAGGCGATCAACGCAATCGAGGCTGTGATCGCAGAGTAA
back to top