mRNA_P-wetherbeei_contig5818.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig5818.2.1
Unique NamemRNA_P-wetherbeei_contig5818.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig5818.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig5818contigP-wetherbeei_contig5818:1765..3684 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size1776
Hectar predicted targeting categoryother localisation
Exons2
Cds size1773
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186862.0740907-CDS-P-wetherbeei_contig5818:1765..29331683186862.0740907-CDS-P-wetherbeei_contig5818:1765..2933Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5818 1766..2933 -
1683186862.0841875-CDS-P-wetherbeei_contig5818:3079..36841683186862.0841875-CDS-P-wetherbeei_contig5818:3079..3684Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5818 3080..3684 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig5818.2.1prot_P-wetherbeei_contig5818.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig5818 1766..3684 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig5818.2.1

>prot_P-wetherbeei_contig5818.2.1 ID=prot_P-wetherbeei_contig5818.2.1|Name=mRNA_P-wetherbeei_contig5818.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=591bp
QSDTCPADTWQHGGEGVPGAKQPSKRKQYTEQRRKGHRPNSLVNRWELFP
SSLTVLSNSALSRASSTSVSKLEQLFGLPAVCQGCERQMRRAKNKVAAET
PGRTHVEAFRYEGIGANDANSVSSVATEELRYDDVSNISSATPAATRKAS
RKAKKGGGGAVCAAAKASEAASTDGAVDTDGANKGSRFIPAATASAATAS
EASRGAKRKRSTGIPRLHDAAATGLAAALAPAVKRTPDNTDADDEPNSER
QGLPAAEEAPAAMSPPAKKAAAAKVTVAEPGGKSAAHSAHVAARSSLTDR
GVSKRPRGGSSERSSKVPRVEGTVDKTVATSAAAAAPAAEPPVAAATRQP
PAPRAPGEAAAATAGTAKTAAPAGAAAAKPQHNTGPAASACAAGGGGRGS
DRQARLPSGPPAAYPNDARFALQGQPPTLAALIAQVAKAEADAVTQRCGD
DPRRAPAVRAVAAAADNLVAAATAAAAAEQKRGGGAGSNSGGGAAAATAA
APGSMDGIMVGGIRWEEAQEQLEHLRGLRDLFRQEEMEWKQQQQQQGPAA
STAALPSSVAAAPTAGAAVSGGAGVVHPIAAMSPSPLPPPL
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mRNA from alignment at P-wetherbeei_contig5818:1765..3684-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig5818.2.1 ID=mRNA_P-wetherbeei_contig5818.2.1|Name=mRNA_P-wetherbeei_contig5818.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1920bp|location=Sequence derived from alignment at P-wetherbeei_contig5818:1765..3684- (Phaeothamnion wetherbeei SAG_119_79)
CAGTCTGACACCTGCCCTGCCGATACGTGGCAGCACGGAGGAGAGGGTGT
CCCCGGGGCTAAACAACCTTCAAAACGAAAACAATACACAGAGCAAAGGA
GAAAGGGACATCGTCCGAATAGCCTGGTGAACAGATGGGAATTATTCCCG
TCATCGCTGACGGTCTTGTCTAACTCGGCACTCTCCAGGGCATCGAGCAC
CTCAGTTTCAAAACTTGAGCAACTTTTTGGCTTACCCGCGGTTTGCCAAG
GCTGCGAAAGGCAAATGCGTCGCGCAAAGAACAAGGTTGCCGCGGAAACT
CCTGGCCGCACGCACGTCGAGGCATTTCGATACGAAGGCATCGGCGCCAA
CGACGCAAACTCCGTCAGTTCAGTTGCTACGGAAGAGCTCCGTTACGACG
ACGTAAGCAACATCTCCTCGGCGACGCCAGCCGCAACGAGGAAAGCTTCC
CGCAAGGCGAAGAAAGGCGGTGGAGGCGCCGTTTGCGCGGCCGCAAAAGC
GTCGGAAGCTGCGTCTACAGATGGGGCGGTCGATACTGATGGTGCTAATA
AAGGCAGCCGATTCATCCCAGCGGCGACGGCCTCGGCGGCGACGGCCTCA
GAAGCGTAAGTAGCTAGCGTCGTCATCCTCTAAGTTATAAACGCTGTCAA
CGCCCCCCCATTTTGTCATACAGAGCCAGCCTTGTATACTGACCTGTTGG
GTGCCATGCGAACCCTTTCCTCTTGCCTCCTGCTTCCCCTTTTGTCACCA
GCTCACGCGGTGCCAAGCGAAAGCGATCAACGGGCATTCCTCGCCTTCAC
GATGCGGCGGCGACGGGGCTGGCGGCGGCGCTAGCTCCGGCGGTTAAAAG
AACACCAGATAATACTGACGCGGATGACGAGCCAAACAGCGAACGGCAGG
GCCTCCCTGCCGCAGAAGAGGCACCCGCCGCGATGTCACCGCCTGCCAAG
AAGGCGGCCGCCGCCAAAGTGACCGTCGCTGAGCCTGGAGGGAAATCTGC
TGCCCATTCCGCGCACGTCGCCGCCCGCTCCAGCTTAACGGACCGCGGCG
TTTCGAAACGGCCGCGCGGCGGTTCAAGCGAGAGGTCGTCAAAAGTGCCG
CGCGTGGAAGGGACAGTGGACAAAACCGTCGCCACTTCCGCCGCCGCTGC
TGCTCCCGCTGCCGAACCACCAGTCGCTGCCGCTACACGGCAGCCGCCAG
CGCCTCGAGCTCCGGGAGAAGCAGCTGCTGCGACAGCTGGCACGGCCAAG
ACGGCTGCGCCGGCCGGCGCTGCCGCTGCCAAGCCCCAGCACAACACGGG
CCCGGCAGCTTCCGCCTGCGCCGCTGGCGGCGGCGGCAGGGGGAGCGACA
GACAAGCCCGCCTCCCAAGCGGCCCGCCGGCGGCCTATCCCAACGACGCG
CGCTTCGCGCTGCAGGGACAGCCCCCGACGCTCGCCGCGCTGATTGCTCA
GGTCGCCAAAGCCGAAGCTGATGCCGTGACTCAGCGCTGCGGCGATGACC
CACGGCGTGCCCCCGCAGTTCGGGCTGTTGCCGCCGCAGCGGACAATCTG
GTCGCTGCCGCTACCGCTGCCGCCGCTGCCGAGCAGAAACGCGGCGGCGG
CGCCGGCAGCAACTCTGGCGGCGGAGCGGCAGCTGCGACGGCAGCAGCAC
CGGGCAGCATGGACGGCATCATGGTCGGCGGCATCCGGTGGGAGGAGGCG
CAGGAGCAGCTGGAGCACTTACGCGGCCTGCGCGACCTCTTTCGGCAGGA
GGAGATGGAGTGGAAGCAGCAGCAGCAGCAGCAAGGCCCCGCCGCATCGA
CTGCGGCACTGCCTTCCTCTGTTGCCGCCGCGCCCACCGCCGGTGCCGCG
GTGAGCGGCGGCGCCGGCGTCGTCCACCCGATTGCCGCGATGTCGCCGTC
GCCGCTGCCGCCGCCCCTCC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig5818:1765..3684-

>mRNA_P-wetherbeei_contig5818.2.1 ID=mRNA_P-wetherbeei_contig5818.2.1|Name=mRNA_P-wetherbeei_contig5818.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1773bp|location=Sequence derived from alignment at P-wetherbeei_contig5818:1765..3684- (Phaeothamnion wetherbeei SAG_119_79)
CAGTCTGACACCTGCCCTGCCGATACGTGGCAGCACGGAGGAGAGGGTGT
CCCCGGGGCTAAACAACCTTCAAAACGAAAACAATACACAGAGCAAAGGA
GAAAGGGACATCGTCCGAATAGCCTGGTGAACAGATGGGAATTATTCCCG
TCATCGCTGACGGTCTTGTCTAACTCGGCACTCTCCAGGGCATCGAGCAC
CTCAGTTTCAAAACTTGAGCAACTTTTTGGCTTACCCGCGGTTTGCCAAG
GCTGCGAAAGGCAAATGCGTCGCGCAAAGAACAAGGTTGCCGCGGAAACT
CCTGGCCGCACGCACGTCGAGGCATTTCGATACGAAGGCATCGGCGCCAA
CGACGCAAACTCCGTCAGTTCAGTTGCTACGGAAGAGCTCCGTTACGACG
ACGTAAGCAACATCTCCTCGGCGACGCCAGCCGCAACGAGGAAAGCTTCC
CGCAAGGCGAAGAAAGGCGGTGGAGGCGCCGTTTGCGCGGCCGCAAAAGC
GTCGGAAGCTGCGTCTACAGATGGGGCGGTCGATACTGATGGTGCTAATA
AAGGCAGCCGATTCATCCCAGCGGCGACGGCCTCGGCGGCGACGGCCTCA
GAAGCCTCACGCGGTGCCAAGCGAAAGCGATCAACGGGCATTCCTCGCCT
TCACGATGCGGCGGCGACGGGGCTGGCGGCGGCGCTAGCTCCGGCGGTTA
AAAGAACACCAGATAATACTGACGCGGATGACGAGCCAAACAGCGAACGG
CAGGGCCTCCCTGCCGCAGAAGAGGCACCCGCCGCGATGTCACCGCCTGC
CAAGAAGGCGGCCGCCGCCAAAGTGACCGTCGCTGAGCCTGGAGGGAAAT
CTGCTGCCCATTCCGCGCACGTCGCCGCCCGCTCCAGCTTAACGGACCGC
GGCGTTTCGAAACGGCCGCGCGGCGGTTCAAGCGAGAGGTCGTCAAAAGT
GCCGCGCGTGGAAGGGACAGTGGACAAAACCGTCGCCACTTCCGCCGCCG
CTGCTGCTCCCGCTGCCGAACCACCAGTCGCTGCCGCTACACGGCAGCCG
CCAGCGCCTCGAGCTCCGGGAGAAGCAGCTGCTGCGACAGCTGGCACGGC
CAAGACGGCTGCGCCGGCCGGCGCTGCCGCTGCCAAGCCCCAGCACAACA
CGGGCCCGGCAGCTTCCGCCTGCGCCGCTGGCGGCGGCGGCAGGGGGAGC
GACAGACAAGCCCGCCTCCCAAGCGGCCCGCCGGCGGCCTATCCCAACGA
CGCGCGCTTCGCGCTGCAGGGACAGCCCCCGACGCTCGCCGCGCTGATTG
CTCAGGTCGCCAAAGCCGAAGCTGATGCCGTGACTCAGCGCTGCGGCGAT
GACCCACGGCGTGCCCCCGCAGTTCGGGCTGTTGCCGCCGCAGCGGACAA
TCTGGTCGCTGCCGCTACCGCTGCCGCCGCTGCCGAGCAGAAACGCGGCG
GCGGCGCCGGCAGCAACTCTGGCGGCGGAGCGGCAGCTGCGACGGCAGCA
GCACCGGGCAGCATGGACGGCATCATGGTCGGCGGCATCCGGTGGGAGGA
GGCGCAGGAGCAGCTGGAGCACTTACGCGGCCTGCGCGACCTCTTTCGGC
AGGAGGAGATGGAGTGGAAGCAGCAGCAGCAGCAGCAAGGCCCCGCCGCA
TCGACTGCGGCACTGCCTTCCTCTGTTGCCGCCGCGCCCACCGCCGGTGC
CGCGGTGAGCGGCGGCGCCGGCGTCGTCCACCCGATTGCCGCGATGTCGC
CGTCGCCGCTGCCGCCGCCCCTC
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