mRNA_P-wetherbeei_contig58149.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig58149.1.1
Unique NamemRNA_P-wetherbeei_contig58149.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig58149.1.1 vs. uniprot
Match: W7TZ53_9STRA (Lysine-specific demethylase 5d n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TZ53_9STRA)

HSP 1 Score: 87.0 bits (214), Expect = 2.650e-17
Identity = 55/133 (41.35%), Postives = 82/133 (61.65%), Query Frame = 1
Query:    1 LQSKLDAAAAWLDRVRRAIPKASKPAGSAGXXXXGPEKAGLEEVRELLGAREQTGVLLEGKEVDAVAGVLETADDWLGRVRAALEGGS-EPTLMSLSALLDEAVGIPVAMEEYRVLQVGIKARNWKVRVKAGL 396
            ++ K++ A  W+++VR+A+P+ +K   +AG       K      R LL   E  G+ ++ KE+D +AGVL+TA+ WL RVR ALE  + E  L SL ALL EA  IPV M+E+++L   I+AR W +RV+  L
Sbjct:  686 IRGKVEQAHHWVEKVRKALPRKNKTRSNAGDAG----KVDYSAARTLLS--EGAGIRVDVKELDDIAGVLDTAETWLQRVREALEESTDEAGLQSLQALLCEADDIPVEMDEHKILAAEIEARRWGLRVQPRL 812          
BLAST of mRNA_P-wetherbeei_contig58149.1.1 vs. uniprot
Match: D7FR56_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FR56_ECTSI)

HSP 1 Score: 83.6 bits (205), Expect = 4.280e-16
Identity = 45/96 (46.88%), Postives = 61/96 (63.54%), Query Frame = 1
Query:  109 EKAGLEEVRELLGAREQTGVLLEGKEVDAVAGVLETADDWLGRVRAALEGGSEPTLMSLSALLDEAVGIPVAMEEYRVLQVGIKARNWKVRVKAGL 396
            EK  L  V+ LL +   TGV ++ KE      ++E A++W+ RV+  LE G   TL +L ALL EA GIPV MEE ++L VGIK+R W++RV A L
Sbjct:  387 EKVDLSHVKGLLSSSSTTGVEMDMKEFSHTNDLIENAEEWMTRVKDMLESGEPTTLQALEALLIEAEGIPVQMEEQQLLTVGIKSRQWRIRVDATL 482          
BLAST of mRNA_P-wetherbeei_contig58149.1.1 vs. uniprot
Match: A0A7R9U4V9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U4V9_9STRA)

HSP 1 Score: 65.9 bits (159), Expect = 6.650e-10
Identity = 42/124 (33.87%), Postives = 67/124 (54.03%), Query Frame = 1
Query:    1 LQSKLDAAAAWLDRVRRAIPKASKPAGSAGXXXXGPEKAGLEEVRELLGAREQTGVLLEGKEVDAVAGVLETADDWLGRVRAALEGGSEPTLMSLSALLDEAVGIPVAMEEYRVLQVGIKARNW 372
            L+ KL  A  W+++VR+A+P       S+        K  L +V+ LL   +  GV L  KE   + G+++TA+DW+ RVR  ++ G +  L  L+ LL E   IPV ++E  +L+  I  +NW
Sbjct:  164 LEEKLRMAQEWVEKVRKAVPNRKA---SSRCDPHPVSKMDLTDVKGLLAEADTVGVEL--KETGGLRGLVDTAEDWVSRVRELIDFGGDADLDLLNELLSEGSSIPVKIDEVEILRHQILLQNW 282          
BLAST of mRNA_P-wetherbeei_contig58149.1.1 vs. uniprot
Match: A0A8K1C3S4_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1C3S4_PYTOL)

HSP 1 Score: 65.5 bits (158), Expect = 9.140e-10
Identity = 43/125 (34.40%), Postives = 68/125 (54.40%), Query Frame = 1
Query:    4 QSKLDAAAAWLDRVRRAIPK--ASKPAGSAGXXXXGPEKAGLEEVRELLGAREQTGVLLEGKEVDAVAGVLETADDWLGRVRAALEGGSEPTLMSLSALLDEAVGIPVAMEEYRVLQVGIKARNW 372
            Q+K+  A +WL +VR+ IPK   S+  G        P+K  L  +R L+          +  EV  +  +LE AD+W  +V+AA+EGG++ +L  L  L++E   +PV M+E + L+  I AR W
Sbjct:  383 QNKMMTAQSWLAKVRKCIPKRRTSRRGGPE------PKKMDLNAIRALV----DDAPCEDSAEVFEMQDLLECADEWAEKVKAAIEGGADVSLEELKTLMEEGNEMPVDMDEQKYLEAEIAAREW 497          
BLAST of mRNA_P-wetherbeei_contig58149.1.1 vs. uniprot
Match: A0A7S2R6X8_9STRA (Hypothetical protein n=1 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2R6X8_9STRA)

HSP 1 Score: 53.9 bits (128), Expect = 9.860e-6
Identity = 38/132 (28.79%), Postives = 68/132 (51.52%), Query Frame = 1
Query:    1 LQSKLDAAAAWLDRVRRAIPKASKPAGSAGXXXXGPEKAGLEEVRELLGAREQTGVLLEGKEVDAVAGVLETADDWLGRVRAALEGGSEPTLMSLSALLDEAVGIPVAMEEYRVLQVGIKARNWKVRVKAGL 396
            L   L  A   + +++  +PK  K  G+        +K  L  +R L    E   + +  +E+  +  +++  DDW  RV+ AL+   E  L +LSALLDEA GIPV M++ ++L+  ++A+   + ++  L
Sbjct:  698 LDDHLKRAQECIAKMKNVVPKKQKTRGNTEV-----KKMELATLRVL--KDEAASIGIPSQEIQDMENLIKLGDDWSIRVKTALDNVDEVDLDTLSALLDEAGGIPVLMDQEKLLKYEVQAKECVLEIEEAL 822          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig58149.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
W7TZ53_9STRA2.650e-1741.35Lysine-specific demethylase 5d n=2 Tax=Monodopsida... [more]
D7FR56_ECTSI4.280e-1646.88Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7R9U4V9_9STRA6.650e-1033.87Hypothetical protein (Fragment) n=1 Tax=Pinguiococ... [more]
A0A8K1C3S4_PYTOL9.140e-1034.40Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A7S2R6X8_9STRA9.860e-628.79Hypothetical protein n=1 Tax=labyrinthulid quahog ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig58149contigP-wetherbeei_contig58149:1..498 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7FR56
Preferred nameCTF1
PFAMsELM2,PHD,PLU-1,PRF
Model size396
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0005102,GO:0005125,GO:0005488,GO:0005515,GO:0005575,GO:0005576,GO:0007154,GO:0007165,GO:0007166,GO:0008150,GO:0009966,GO:0009987,GO:0010469,GO:0010646,GO:0023051,GO:0023052,GO:0030545,GO:0048018,GO:0048583,GO:0050789,GO:0050794,GO:0050896,GO:0051716,GO:0065007,GO:0065009,GO:0098772
Exons2
Evalue7.02e-17
EggNOG OGsKOG1633@1|root,KOG1633@2759|Eukaryota
Descriptiondemethylase
Cds size396
COG categoryO
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186861.66356-CDS-P-wetherbeei_contig58149:0..3101683186861.66356-CDS-P-wetherbeei_contig58149:0..310Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig58149 1..310 -
1683186861.677064-CDS-P-wetherbeei_contig58149:412..4981683186861.677064-CDS-P-wetherbeei_contig58149:412..498Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig58149 413..498 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig58149.1.1prot_P-wetherbeei_contig58149.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig58149 1..498 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig58149.1.1

>prot_P-wetherbeei_contig58149.1.1 ID=prot_P-wetherbeei_contig58149.1.1|Name=mRNA_P-wetherbeei_contig58149.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=132bp
LQSKLDAAAAWLDRVRRAIPKASKPAGSAGGGGGGPEKAGLEEVRELLGA
REQTGVLLEGKEVDAVAGVLETADDWLGRVRAALEGGSEPTLMSLSALLD
EAVGIPVAMEEYRVLQVGIKARNWKVRVKAGL
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mRNA from alignment at P-wetherbeei_contig58149:1..498-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig58149.1.1 ID=mRNA_P-wetherbeei_contig58149.1.1|Name=mRNA_P-wetherbeei_contig58149.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=498bp|location=Sequence derived from alignment at P-wetherbeei_contig58149:1..498- (Phaeothamnion wetherbeei SAG_119_79)
CTGCAGTCCAAGCTAGATGCCGCCGCGGCCTGGCTGGACCGCGTCCGCCG CGCCATCCCGAAGGCAAGCAAACCAGCCGGATCAGCGTCAACCCGCCGCA ACCCCGCCAAGAGCAGCAAGGCCGGCGGCAGTGGCGGCGGCGCCAGCGGC GGCAGCGGAGAGGCCAGTGGTGGCGGCGGCGGCTATAGCGGCGGCGGCGG CGGCGGGCCTGAGAAGGCGGGCCTGGAGGAAGTGCGTGAGCTGCTGGGCG CGCGCGAGCAGACGGGCGTTTTGCTAGAGGGCAAGGAGGTGGATGCGGTG GCGGGCGTGCTGGAGACGGCCGACGACTGGCTGGGGCGCGTCCGCGCGGC GCTCGAGGGCGGCTCAGAACCGACACTCATGTCGCTCTCGGCACTTCTCG ACGAAGCGGTGGGCATCCCCGTGGCCATGGAGGAGTACCGGGTGCTGCAG GTCGGCATCAAGGCCCGCAACTGGAAGGTGCGCGTCAAGGCGGGCCTC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig58149:1..498-

>mRNA_P-wetherbeei_contig58149.1.1 ID=mRNA_P-wetherbeei_contig58149.1.1|Name=mRNA_P-wetherbeei_contig58149.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=396bp|location=Sequence derived from alignment at P-wetherbeei_contig58149:1..498- (Phaeothamnion wetherbeei SAG_119_79)
CTGCAGTCCAAGCTAGATGCCGCCGCGGCCTGGCTGGACCGCGTCCGCCG
CGCCATCCCGAAGGCAAGCAAACCAGCCGGATCAGCCGGCGGCGGCGGCG
GCGGGCCTGAGAAGGCGGGCCTGGAGGAAGTGCGTGAGCTGCTGGGCGCG
CGCGAGCAGACGGGCGTTTTGCTAGAGGGCAAGGAGGTGGATGCGGTGGC
GGGCGTGCTGGAGACGGCCGACGACTGGCTGGGGCGCGTCCGCGCGGCGC
TCGAGGGCGGCTCAGAACCGACACTCATGTCGCTCTCGGCACTTCTCGAC
GAAGCGGTGGGCATCCCCGTGGCCATGGAGGAGTACCGGGTGCTGCAGGT
CGGCATCAAGGCCCGCAACTGGAAGGTGCGCGTCAAGGCGGGCCTC
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