mRNA_P-wetherbeei_contig58141.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig58141.1.1
Unique NamemRNA_P-wetherbeei_contig58141.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig58141.1.1 vs. uniprot
Match: A0A1M7EPT3_9BRAD (Uncharacterized protein n=1 Tax=Bradyrhizobium lablabi TaxID=722472 RepID=A0A1M7EPT3_9BRAD)

HSP 1 Score: 55.8 bits (133), Expect = 1.380e-9
Identity = 28/35 (80.00%), Postives = 32/35 (91.43%), Query Frame = 1 
Query:    7 NRETKKPKKDKIKTIAAAPSQKGVGNLQSEFGSGK 111
            NRE KKPKK+KIK+IAAAPSQKGVG+LQS FG+ K
Sbjct:    9 NREKKKPKKEKIKSIAAAPSQKGVGSLQSGFGNKK 43
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BLAST of mRNA_P-wetherbeei_contig58141.1.1 vs. uniprot
Match: A0A1H0Q590_9BRAD (Uncharacterized protein n=1 Tax=Afipia sp. GAS231 TaxID=1882747 RepID=A0A1H0Q590_9BRAD)

HSP 1 Score: 55.8 bits (133), Expect = 1.380e-9
Identity = 28/37 (75.68%), Postives = 32/37 (86.49%), Query Frame = 1 
Query:    1 RSNRETKKPKKDKIKTIAAAPSQKGVGNLQSEFGSGK 111
            +SNRE KKPKKDKIK IAAAPSQKGVG +QS +G+ K
Sbjct:    7 KSNREKKKPKKDKIKAIAAAPSQKGVGGVQSGYGNKK 43
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BLAST of mRNA_P-wetherbeei_contig58141.1.1 vs. uniprot
Match: Q20XG5_RHOPB (Uncharacterized protein n=2 Tax=Rhodopseudomonas TaxID=1073 RepID=Q20XG5_RHOPB)

HSP 1 Score: 53.5 bits (127), Expect = 1.210e-8
Identity = 29/38 (76.32%), Postives = 32/38 (84.21%), Query Frame = 1 
Query:    7 NRETKKPKKDKIKTIAAAPSQKGVG-NLQSEFGSGKKK 117
            NRETKKPKK+K+KTIAAAPSQKG G + Q   GSGKKK
Sbjct:    9 NRETKKPKKEKVKTIAAAPSQKGSGGSWQPTLGSGKKK 46
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BLAST of mRNA_P-wetherbeei_contig58141.1.1 vs. uniprot
Match: A0A1M7SUQ7_9BRAD (Uncharacterized protein n=1 Tax=Bradyrhizobium erythrophlei TaxID=1437360 RepID=A0A1M7SUQ7_9BRAD)

HSP 1 Score: 50.8 bits (120), Expect = 1.360e-7
Identity = 29/39 (74.36%), Postives = 31/39 (79.49%), Query Frame = 1 
Query:    1 RSNRETKKPKKDKIKTIAAAPSQKGVGNLQSEFGSGKKK 117
            R NRE KKPKK KIKTIAAAPSQK V + Q +F SGKKK
Sbjct:    7 RGNREVKKPKKTKIKTIAAAPSQKSV-SWQPDFASGKKK 44
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BLAST of mRNA_P-wetherbeei_contig58141.1.1 vs. uniprot
Match: A0A1G9X6T0_9BRAD (Uncharacterized protein n=5 Tax=root TaxID=1 RepID=A0A1G9X6T0_9BRAD)

HSP 1 Score: 50.8 bits (120), Expect = 1.360e-7
Identity = 28/37 (75.68%), Postives = 31/37 (83.78%), Query Frame = 1 
Query:    7 NRETKKPKKDKIKTIAAAPSQKGVGNLQSEFGSGKKK 117
            NRE+KKPKK+KIKTIAAAPSQK  G  Q  FG+GKKK
Sbjct:    9 NRESKKPKKEKIKTIAAAPSQKTAG-WQPTFGAGKKK 44
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BLAST of mRNA_P-wetherbeei_contig58141.1.1 vs. uniprot
Match: Q1QQ08_NITHX (Uncharacterized protein n=1 Tax=Nitrobacter hamburgensis (strain DSM 10229 / NCIMB 13809 / X14) TaxID=323097 RepID=Q1QQ08_NITHX)

HSP 1 Score: 50.4 bits (119), Expect = 1.850e-7
Identity = 26/39 (66.67%), Postives = 30/39 (76.92%), Query Frame = 1 
Query:    1 RSNRETKKPKKDKIKTIAAAPSQKGVGNLQSEFGSGKKK 117
            +SNRE+KKPKK+K K IAA PSQKG    Q  FG+GKKK
Sbjct:    3 KSNRESKKPKKEKAKIIAATPSQKGAVAWQPNFGAGKKK 41
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BLAST of mRNA_P-wetherbeei_contig58141.1.1 vs. uniprot
Match: Q6N2P6_RHOPA (Uncharacterized protein n=2 Tax=Rhodopseudomonas palustris TaxID=1076 RepID=Q6N2P6_RHOPA)

HSP 1 Score: 50.4 bits (119), Expect = 1.970e-7
Identity = 28/39 (71.79%), Postives = 31/39 (79.49%), Query Frame = 1 
Query:    1 RSNRETKKPKKDKIKTIAAAPSQKGVGNLQSEFGSGKKK 117
            +SNRE KKPKK+K+KTIAAAPSQK  G  Q  F SGKKK
Sbjct:    7 KSNREAKKPKKEKVKTIAAAPSQK-PGGWQPSFDSGKKK 44
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BLAST of mRNA_P-wetherbeei_contig58141.1.1 vs. uniprot
Match: A0A0R3DU58_9BRAD (Uncharacterized protein n=1 Tax=Bradyrhizobium manausense TaxID=989370 RepID=A0A0R3DU58_9BRAD)

HSP 1 Score: 50.1 bits (118), Expect = 5.000e-7
Identity = 28/39 (71.79%), Postives = 30/39 (76.92%), Query Frame = 1 
Query:    1 RSNRETKKPKKDKIKTIAAAPSQKGVGNLQSEFGSGKKK 117
            RSNRE KKPKKDK K IAAAPS+K   N Q +FG GKKK
Sbjct:   34 RSNREAKKPKKDKAKVIAAAPSRKDA-NWQPDFGPGKKK 71
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BLAST of mRNA_P-wetherbeei_contig58141.1.1 vs. uniprot
Match: Q07KF1_RHOP5 (Uncharacterized protein n=1 Tax=Rhodopseudomonas palustris (strain BisA53) TaxID=316055 RepID=Q07KF1_RHOP5)

HSP 1 Score: 49.3 bits (116), Expect = 5.540e-7
Identity = 27/37 (72.97%), Postives = 29/37 (78.38%), Query Frame = 1 
Query:    7 NRETKKPKKDKIKTIAAAPSQKGVGNLQSEFGSGKKK 117
            NRE KKPKKDK+KTIAAAPSQK  G  Q   G+GKKK
Sbjct:    9 NREAKKPKKDKVKTIAAAPSQKTAG-WQPTIGTGKKK 44
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BLAST of mRNA_P-wetherbeei_contig58141.1.1 vs. uniprot
Match: A0A1H8BM49_9BRAD (Uncharacterized protein n=1 Tax=Bradyrhizobium sp. OK095 TaxID=1882760 RepID=A0A1H8BM49_9BRAD)

HSP 1 Score: 49.3 bits (116), Expect = 5.540e-7
Identity = 28/39 (71.79%), Postives = 30/39 (76.92%), Query Frame = 1 
Query:    1 RSNRETKKPKKDKIKTIAAAPSQKGVGNLQSEFGSGKKK 117
            RSNRETKKPKKDKIK  AAAPS+K     Q E G+GKKK
Sbjct:    7 RSNRETKKPKKDKIKATAAAPSRKDAA-WQPEIGAGKKK 44
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig58141.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A1M7EPT3_9BRAD1.380e-980.00Uncharacterized protein n=1 Tax=Bradyrhizobium lab... [more]
A0A1H0Q590_9BRAD1.380e-975.68Uncharacterized protein n=1 Tax=Afipia sp. GAS231 ... [more]
Q20XG5_RHOPB1.210e-876.32Uncharacterized protein n=2 Tax=Rhodopseudomonas T... [more]
A0A1M7SUQ7_9BRAD1.360e-774.36Uncharacterized protein n=1 Tax=Bradyrhizobium ery... [more]
A0A1G9X6T0_9BRAD1.360e-775.68Uncharacterized protein n=5 Tax=root TaxID=1 RepID... [more]
Q1QQ08_NITHX1.850e-766.67Uncharacterized protein n=1 Tax=Nitrobacter hambur... [more]
Q6N2P6_RHOPA1.970e-771.79Uncharacterized protein n=2 Tax=Rhodopseudomonas p... [more]
A0A0R3DU58_9BRAD5.000e-771.79Uncharacterized protein n=1 Tax=Bradyrhizobium man... [more]
Q07KF1_RHOP55.540e-772.97Uncharacterized protein n=1 Tax=Rhodopseudomonas p... [more]
A0A1H8BM49_9BRAD5.540e-771.79Uncharacterized protein n=1 Tax=Bradyrhizobium sp.... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig58141contigP-wetherbeei_contig58141:3..122 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog316056.RPC_4649
Model size120
Max annot lvl28211|Alphaproteobacteria
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Evalue1.98e-09
EggNOG OGs2BUDZ@1|root,32PPY@2|Bacteria,1MYIA@1224|Proteobacteria,2UAHZ@28211|Alphaproteobacteria,3JZMW@41294|Bradyrhizobiaceae
Cds size120
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186861.5829856-CDS-P-wetherbeei_contig58141:2..1221683186861.5829856-CDS-P-wetherbeei_contig58141:2..122Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig58141 3..122 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig58141.1.1prot_P-wetherbeei_contig58141.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig58141 3..122 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig58141.1.1

>prot_P-wetherbeei_contig58141.1.1 ID=prot_P-wetherbeei_contig58141.1.1|Name=mRNA_P-wetherbeei_contig58141.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=40bp
RSNRETKKPKKDKIKTIAAAPSQKGVGNLQSEFGSGKKK*
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mRNA from alignment at P-wetherbeei_contig58141:3..122+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig58141.1.1 ID=mRNA_P-wetherbeei_contig58141.1.1|Name=mRNA_P-wetherbeei_contig58141.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=120bp|location=Sequence derived from alignment at P-wetherbeei_contig58141:3..122+ (Phaeothamnion wetherbeei SAG_119_79)
CGCAGCAATCGGGAAACCAAGAAGCCGAAGAAGGACAAGATCAAGACCAT
CGCCGCAGCGCCGAGCCAGAAGGGCGTCGGAAACCTGCAGTCGGAGTTTG
GCTCCGGCAAAAAGAAATAA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig58141:3..122+

>mRNA_P-wetherbeei_contig58141.1.1 ID=mRNA_P-wetherbeei_contig58141.1.1|Name=mRNA_P-wetherbeei_contig58141.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=120bp|location=Sequence derived from alignment at P-wetherbeei_contig58141:3..122+ (Phaeothamnion wetherbeei SAG_119_79)
CGCAGCAATCGGGAAACCAAGAAGCCGAAGAAGGACAAGATCAAGACCAT
CGCCGCAGCGCCGAGCCAGAAGGGCGTCGGAAACCTGCAGTCGGAGTTTG
GCTCCGGCAAAAAGAAATAA
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