mRNA_P-wetherbeei_contig58112.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig58112.1.1
Unique NamemRNA_P-wetherbeei_contig58112.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig58112.1.1 vs. uniprot
Match: A0A6J4UFN2_9CHLR (Uncharacterized protein n=1 Tax=uncultured Thermomicrobiales bacterium TaxID=1645740 RepID=A0A6J4UFN2_9CHLR)

HSP 1 Score: 135 bits (341), Expect = 4.410e-36
Identity = 69/92 (75.00%), Postives = 85/92 (92.39%), Query Frame = 1
Query:    4 TILAFALVLIGLKRLPLYYTAFTVPPLIVPLFSPSSVHPLMSMPRFVLPLFPLFVMFALLIPNRRVGIALATVSSLLLILLTMQFSQWYWVA 279
            T+LA ALVLIGL++LPLY++AF +PPLIVPL +PSSV+PLMSMPRFVLPLFPLFV+ ALL+ +RR+G+ LA VSSLLLI+LTMQF+QWYWV+
Sbjct:  357 TVLAIALVLIGLRKLPLYFSAFVIPPLIVPLLTPSSVNPLMSMPRFVLPLFPLFVVVALLVKDRRLGVPLAVVSSLLLIVLTMQFAQWYWVS 448          
BLAST of mRNA_P-wetherbeei_contig58112.1.1 vs. uniprot
Match: A0A6J4V4H8_9CHLR (Predicted integral membrane protein n=1 Tax=uncultured Thermomicrobiales bacterium TaxID=1645740 RepID=A0A6J4V4H8_9CHLR)

HSP 1 Score: 134 bits (337), Expect = 1.660e-35
Identity = 68/92 (73.91%), Postives = 82/92 (89.13%), Query Frame = 1
Query:    4 TILAFALVLIGLKRLPLYYTAFTVPPLIVPLFSPSSVHPLMSMPRFVLPLFPLFVMFALLIPNRRVGIALATVSSLLLILLTMQFSQWYWVA 279
            T++AFALVL+GLK+LPLYYTAF VPPLIVPL +PSSV+PLMSMPRFVLPLFPLFVM A+L+  R++ + LA  SS LL++LTMQF+QWYWVA
Sbjct:  356 TVVAFALVLVGLKKLPLYYTAFIVPPLIVPLLTPSSVNPLMSMPRFVLPLFPLFVMIAILLRGRKLAVPLAVGSSFLLVILTMQFAQWYWVA 447          
BLAST of mRNA_P-wetherbeei_contig58112.1.1 vs. uniprot
Match: A0A7V9B0Z4_9CHLR (Uncharacterized protein n=1 Tax=Chloroflexia bacterium TaxID=2448782 RepID=A0A7V9B0Z4_9CHLR)

HSP 1 Score: 132 bits (332), Expect = 8.580e-35
Identity = 64/93 (68.82%), Postives = 83/93 (89.25%), Query Frame = 1
Query:    1 ATILAFALVLIGLKRLPLYYTAFTVPPLIVPLFSPSSVHPLMSMPRFVLPLFPLFVMFALLIPNRRVGIALATVSSLLLILLTMQFSQWYWVA 279
            ATILAFAL +IGL++LPL+Y+AF +PPL+VPLFSP +VHPLMSMPRF+LPLFPLFV+ ALL+ +RR+G+ LA +S+ LL LL+MQF+ WYWV+
Sbjct:  353 ATILAFALAIIGLRKLPLFYSAFVLPPLVVPLFSPGAVHPLMSMPRFILPLFPLFVVIALLVKDRRIGVPLAVLSAALLALLSMQFANWYWVS 445          
BLAST of mRNA_P-wetherbeei_contig58112.1.1 vs. uniprot
Match: A0A7V8VVG2_9CHLR (Uncharacterized protein n=1 Tax=Chloroflexia bacterium TaxID=2448782 RepID=A0A7V8VVG2_9CHLR)

HSP 1 Score: 127 bits (318), Expect = 1.970e-34
Identity = 61/92 (66.30%), Postives = 80/92 (86.96%), Query Frame = 1
Query:    4 TILAFALVLIGLKRLPLYYTAFTVPPLIVPLFSPSSVHPLMSMPRFVLPLFPLFVMFALLIPNRRVGIALATVSSLLLILLTMQFSQWYWVA 279
            T+ AF L+L+GL++LP +YTAF VPPLIVPL +PSSV+PLMSMPRFVLPLFPLFVM A+L+  +++ + +A  SS+LL++LTMQF+QWYWVA
Sbjct:  152 TVAAFGLILVGLRKLPFFYTAFIVPPLIVPLLTPSSVNPLMSMPRFVLPLFPLFVMLAILLRGKKLAVPVAVASSILLVILTMQFAQWYWVA 243          
BLAST of mRNA_P-wetherbeei_contig58112.1.1 vs. uniprot
Match: A0A7W0A4B7_9CHLR (Uncharacterized protein n=2 Tax=Chloroflexia bacterium TaxID=2448782 RepID=A0A7W0A4B7_9CHLR)

HSP 1 Score: 130 bits (326), Expect = 6.620e-34
Identity = 64/92 (69.57%), Postives = 81/92 (88.04%), Query Frame = 1
Query:    4 TILAFALVLIGLKRLPLYYTAFTVPPLIVPLFSPSSVHPLMSMPRFVLPLFPLFVMFALLIPNRRVGIALATVSSLLLILLTMQFSQWYWVA 279
            TI AF LVL+G++R+PLYY A  +PPLIVPLFSPSSVHPLMSMPRFVLP+FPLFV+FALL+ NR+ G+ LAT+S++ + +LTMQF+ WYWV+
Sbjct:  357 TIGAFVLVLLGIRRIPLYYFALVLPPLIVPLFSPSSVHPLMSMPRFVLPMFPLFVVFALLVTNRKAGVTLATLSAVGMAILTMQFANWYWVS 448          
BLAST of mRNA_P-wetherbeei_contig58112.1.1 vs. uniprot
Match: A0A7W0PQJ6_9CHLR (Uncharacterized protein n=1 Tax=Chloroflexia bacterium TaxID=2448782 RepID=A0A7W0PQJ6_9CHLR)

HSP 1 Score: 120 bits (301), Expect = 2.050e-31
Identity = 61/92 (66.30%), Postives = 76/92 (82.61%), Query Frame = 1
Query:    4 TILAFALVLIGLKRLPLYYTAFTVPPLIVPLFSPSSVHPLMSMPRFVLPLFPLFVMFALLIPNRRVGIALATVSSLLLILLTMQFSQWYWVA 279
            T+LA   VL+GL+ +PLYYTAF +P LIVPL +PSSV+PLMSMPRFVLPLFPLFV+ ALLI NR  G+ +   SS+LL++LTMQF+ WYWV+
Sbjct:  199 TVLAIVFVLVGLRLIPLYYTAFVIPALIVPLLTPSSVNPLMSMPRFVLPLFPLFVVAALLIRNRTTGLVMVAGSSILLVILTMQFALWYWVS 290          
BLAST of mRNA_P-wetherbeei_contig58112.1.1 vs. uniprot
Match: A0A7W1DY40_9CHLR (Uncharacterized protein n=1 Tax=Chloroflexia bacterium TaxID=2448782 RepID=A0A7W1DY40_9CHLR)

HSP 1 Score: 97.4 bits (241), Expect = 1.280e-24
Identity = 51/87 (58.62%), Postives = 68/87 (78.16%), Query Frame = 1
Query:   19 ALVLIGLKRLPLYYTAFTVPPLIVPLFSPSSVHPLMSMPRFVLPLFPLFVMFALLIPNRRVGIALATVSSLLLILLTMQFSQWYWVA 279
            AL L+GL+ LPLY TAF +P LI+PL+ PS VH LMS+PRF L LFPLFV+ AL++  R   +AL  +S+LLL++LT+QF+ WYWV+
Sbjct:    2 ALALLGLRALPLYQTAFLLPGLIIPLYQPSQVHALMSIPRFGLTLFPLFVVLALIVKGRLAAVALP-LSTLLLVILTIQFTHWYWVS 87          
BLAST of mRNA_P-wetherbeei_contig58112.1.1 vs. uniprot
Match: A0A7W0N9T0_9CHLR (Uncharacterized protein n=1 Tax=Chloroflexia bacterium TaxID=2448782 RepID=A0A7W0N9T0_9CHLR)

HSP 1 Score: 99.8 bits (247), Expect = 1.350e-22
Identity = 53/93 (56.99%), Postives = 69/93 (74.19%), Query Frame = 1
Query:    1 ATILAFALVLIGLKRLPLYYTAFTVPPLIVPLFSPSSVHPLMSMPRFVLPLFPLFVMFALLIPNRRVGIALATVSSLLLILLTMQFSQWYWVA 279
            AT+L   L + GL+ LPLY +A+ +P L++PLF PS+VHPLMSMPRF L LFPLF++ ALLI      + +A  S+LLL+LLT QFS WYWV+
Sbjct:  370 ATLLFIGLAIAGLRLLPLYQSAYLIPGLVIPLFGPSAVHPLMSMPRFGLTLFPLFIVLALLIRRPIFVVPVAIGSTLLLVLLTAQFSNWYWVS 462          
BLAST of mRNA_P-wetherbeei_contig58112.1.1 vs. uniprot
Match: A0A6J4V2W2_9CHLR (Predicted integral membrane protein n=1 Tax=uncultured Thermomicrobiales bacterium TaxID=1645740 RepID=A0A6J4V2W2_9CHLR)

HSP 1 Score: 97.1 bits (240), Expect = 1.240e-21
Identity = 52/92 (56.52%), Postives = 68/92 (73.91%), Query Frame = 1
Query:    4 TILAFALVLIGLKRLPLYYTAFTVPPLIVPLFSPSSVHPLMSMPRFVLPLFPLFVMFALLIPNRRVGIALATVSSLLLILLTMQFSQWYWVA 279
            T+L  AL ++GL+ LPLY++A+  P LI+PLF PS VH LMS+PRF L LFPLFV+ ALL+P R   +AL  +S+ LL+L T QF  WYWV+
Sbjct:  365 TLLFLALAVVGLRALPLYHSAYVFPALIIPLFQPSQVHALMSIPRFGLALFPLFVVLALLVPRRLAPLALG-LSTALLVLFTAQFVDWYWVS 455          
BLAST of mRNA_P-wetherbeei_contig58112.1.1 vs. uniprot
Match: A0A7W0TUX9_9CHLR (Uncharacterized protein n=2 Tax=Chloroflexi TaxID=200795 RepID=A0A7W0TUX9_9CHLR)

HSP 1 Score: 94.4 bits (233), Expect = 9.940e-21
Identity = 48/92 (52.17%), Postives = 70/92 (76.09%), Query Frame = 1
Query:    4 TILAFALVLIGLKRLPLYYTAFTVPPLIVPLFSPSSVHPLMSMPRFVLPLFPLFVMFALLIPNRRVGIALATVSSLLLILLTMQFSQWYWVA 279
            T+L   L ++GL+ LP + +A+ VP L++PLFSPS VH LMSMPRF L LFPLF++ A+L+  R + +A   +++ LL+LLT+QF+QWYWV+
Sbjct:  334 TLLFLGLAVVGLRVLPAWQSAYAVPGLLIPLFSPSEVHALMSMPRFGLTLFPLFIVLAVLLRWRPLAVAALALAATLLLLLTVQFAQWYWVS 425          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig58112.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6J4UFN2_9CHLR4.410e-3675.00Uncharacterized protein n=1 Tax=uncultured Thermom... [more]
A0A6J4V4H8_9CHLR1.660e-3573.91Predicted integral membrane protein n=1 Tax=uncult... [more]
A0A7V9B0Z4_9CHLR8.580e-3568.82Uncharacterized protein n=1 Tax=Chloroflexia bacte... [more]
A0A7V8VVG2_9CHLR1.970e-3466.30Uncharacterized protein n=1 Tax=Chloroflexia bacte... [more]
A0A7W0A4B7_9CHLR6.620e-3469.57Uncharacterized protein n=2 Tax=Chloroflexia bacte... [more]
A0A7W0PQJ6_9CHLR2.050e-3166.30Uncharacterized protein n=1 Tax=Chloroflexia bacte... [more]
A0A7W1DY40_9CHLR1.280e-2458.62Uncharacterized protein n=1 Tax=Chloroflexia bacte... [more]
A0A7W0N9T0_9CHLR1.350e-2256.99Uncharacterized protein n=1 Tax=Chloroflexia bacte... [more]
A0A6J4V2W2_9CHLR1.240e-2156.52Predicted integral membrane protein n=1 Tax=uncult... [more]
A0A7W0TUX9_9CHLR9.940e-2152.17Uncharacterized protein n=2 Tax=Chloroflexi TaxID=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig58112contigP-wetherbeei_contig58112:226..507 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog479434.Sthe_2373
PFAMsMannosyl_trans2
Model size282
Max annot lvl200795|Chloroflexi
Hectar predicted targeting categorysignal anchor
Exons1
Evalue1.38e-11
EggNOG OGsCOG5542@1|root,COG5542@2|Bacteria,2G72S@200795|Chloroflexi
Descriptionintegral membrane protein
Cds size282
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186861.2877495-CDS-P-wetherbeei_contig58112:225..5071683186861.2877495-CDS-P-wetherbeei_contig58112:225..507Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig58112 226..507 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig58112.1.1prot_P-wetherbeei_contig58112.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig58112 226..507 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig58112.1.1

>prot_P-wetherbeei_contig58112.1.1 ID=prot_P-wetherbeei_contig58112.1.1|Name=mRNA_P-wetherbeei_contig58112.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=94bp
ATILAFALVLIGLKRLPLYYTAFTVPPLIVPLFSPSSVHPLMSMPRFVLP
LFPLFVMFALLIPNRRVGIALATVSSLLLILLTMQFSQWYWVA*
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mRNA from alignment at P-wetherbeei_contig58112:226..507-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig58112.1.1 ID=mRNA_P-wetherbeei_contig58112.1.1|Name=mRNA_P-wetherbeei_contig58112.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=282bp|location=Sequence derived from alignment at P-wetherbeei_contig58112:226..507- (Phaeothamnion wetherbeei SAG_119_79)
GCCACCATTCTCGCCTTTGCGCTCGTGCTGATCGGCCTGAAGCGGCTCCC GCTCTACTACACCGCCTTCACGGTGCCCCCGCTGATCGTGCCGCTCTTCA GCCCCAGTTCCGTCCACCCGCTGATGAGCATGCCGCGGTTCGTGCTGCCG CTCTTCCCGCTCTTCGTGATGTTCGCCCTGCTCATCCCGAACCGGCGCGT CGGCATCGCCCTCGCCACCGTCTCCTCCCTGCTGCTGATCCTGCTCACCA TGCAGTTCTCGCAGTGGTACTGGGTCGCCTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig58112:226..507-

>mRNA_P-wetherbeei_contig58112.1.1 ID=mRNA_P-wetherbeei_contig58112.1.1|Name=mRNA_P-wetherbeei_contig58112.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=282bp|location=Sequence derived from alignment at P-wetherbeei_contig58112:226..507- (Phaeothamnion wetherbeei SAG_119_79)
GCCACCATTCTCGCCTTTGCGCTCGTGCTGATCGGCCTGAAGCGGCTCCC
GCTCTACTACACCGCCTTCACGGTGCCCCCGCTGATCGTGCCGCTCTTCA
GCCCCAGTTCCGTCCACCCGCTGATGAGCATGCCGCGGTTCGTGCTGCCG
CTCTTCCCGCTCTTCGTGATGTTCGCCCTGCTCATCCCGAACCGGCGCGT
CGGCATCGCCCTCGCCACCGTCTCCTCCCTGCTGCTGATCCTGCTCACCA
TGCAGTTCTCGCAGTGGTACTGGGTCGCCTGA
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