mRNA_P-wetherbeei_contig5808.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig5808.2.1
Unique NamemRNA_P-wetherbeei_contig5808.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig5808.2.1 vs. uniprot
Match: A0A1F3YSG9_9PROT (Uncharacterized protein n=1 Tax=Betaproteobacteria bacterium RBG_16_66_20 TaxID=1797479 RepID=A0A1F3YSG9_9PROT)

HSP 1 Score: 155 bits (393), Expect = 4.400e-46
Identity = 75/147 (51.02%), Postives = 107/147 (72.79%), Query Frame = 1 
Query:    1 MILRTMILAATFAIGGCSTLTDYGPVSKRSLTDGQGHVIGYKQMLKNDRTGEVVAQVSLFSPILGGSGDVIGYEERSRSGSIIRDLNGRKIGGHFSDSRSRGFTLVVRARGFDQALEQENVASLPRATPGVTQILASLSDRDLNRIR 441
            M+ RT+++AA+ AIGGCST+T+YG V K SL + QGHVIGYK+ML+N+RTGEV+AQ++L++P+ G  G+++GYEE++R G+IIRDLNGR IGG FSD RSRG     + +G        +   +    P + +++ASLS  DL RI+
Sbjct:    1 MLTRTLLIAASLAIGGCSTMTEYGSVRKESLKNDQGHVIGYKEMLRNERTGEVMAQIALYTPVRGTGGEIVGYEEQARDGAIIRDLNGRSIGGRFSDLRSRGTNS--KNKGLTIVFRPADAQQVAVTQPKIWELMASLSASDLRRIQ 145
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BLAST of mRNA_P-wetherbeei_contig5808.2.1 vs. uniprot
Match: A0A537A9W6_9PROT (Uncharacterized protein n=1 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A537A9W6_9PROT)

HSP 1 Score: 109 bits (273), Expect = 5.370e-28
Identity = 53/115 (46.09%), Postives = 80/115 (69.57%), Query Frame = 1 
Query:   16 MILAATFAIGGCSTLTDYGPVSKRSLTDGQGHVIGYKQMLKNDRTGEVVAQVSLFSPILGGSGDVIGYEERSRSGSIIRDLNGRKIGGHFSDSRS-RGFTLVVRARGFDQALEQE 357
            +ILA   A GGCS + +   V++  L + QGHV+GYK M+++ RTGE +AQ++LF P +G  G+++GYEER R G+++RDLNG++IGG + D RS +G  +VVR +  D+    E
Sbjct:    9 IILALGLAAGGCSVI-ETKSVAREDLKNAQGHVVGYKDMMRDSRTGEELAQIALFVPRIGERGEIVGYEERVRGGAVLRDLNGKRIGGSWHDLRSGKGLVIVVRGKQSDRVAMAE 122
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BLAST of mRNA_P-wetherbeei_contig5808.2.1 vs. uniprot
Match: A0A536XX48_9PROT (Uncharacterized protein n=1 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A536XX48_9PROT)

HSP 1 Score: 98.6 bits (244), Expect = 1.510e-23
Identity = 49/115 (42.61%), Postives = 75/115 (65.22%), Query Frame = 1 
Query:    4 ILRTMILAATFAIGGCSTLTDYGPVSKRSLTDGQGHVIGYKQMLKNDRTGEVVAQVSLFSPILGGSGDVIGYEERSRSGSIIRDLNGRKIGGHFSDSRSRGFT-----LVVRARG 333
            ++RT  +A      G  T+ +  PV++  L + QGHVIGYK ++ + R+GE +AQ++LF P LG  G++IGYEER R G+++R+LNG++IG  + D RSRG       L++  RG
Sbjct:    4 LIRTTTIAVLGLAAGACTVMETKPVAREDLKNMQGHVIGYKDLMVDSRSGEELAQLTLFVPRLGEGGEIIGYEERVRGGTVLRELNGKRIGVRWLDVRSRGTNPQSKGLLIMVRG 118
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig5808.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A1F3YSG9_9PROT4.400e-4651.02Uncharacterized protein n=1 Tax=Betaproteobacteria... [more]
A0A537A9W6_9PROT5.370e-2846.09Uncharacterized protein n=1 Tax=Betaproteobacteria... [more]
A0A536XX48_9PROT1.510e-2342.61Uncharacterized protein n=1 Tax=Betaproteobacteria... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig5808contigP-wetherbeei_contig5808:2710..3153 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size444
Hectar predicted targeting categorysignal peptide
Exons1
Cds size444
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186860.776176-CDS-P-wetherbeei_contig5808:2709..31531683186860.776176-CDS-P-wetherbeei_contig5808:2709..3153Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5808 2710..3153 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig5808.2.1prot_P-wetherbeei_contig5808.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig5808 2710..3153 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig5808.2.1

>prot_P-wetherbeei_contig5808.2.1 ID=prot_P-wetherbeei_contig5808.2.1|Name=mRNA_P-wetherbeei_contig5808.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=148bp
MILRTMILAATFAIGGCSTLTDYGPVSKRSLTDGQGHVIGYKQMLKNDRT
GEVVAQVSLFSPILGGSGDVIGYEERSRSGSIIRDLNGRKIGGHFSDSRS
RGFTLVVRARGFDQALEQENVASLPRATPGVTQILASLSDRDLNRIR*
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mRNA from alignment at P-wetherbeei_contig5808:2710..3153-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig5808.2.1 ID=mRNA_P-wetherbeei_contig5808.2.1|Name=mRNA_P-wetherbeei_contig5808.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=444bp|location=Sequence derived from alignment at P-wetherbeei_contig5808:2710..3153- (Phaeothamnion wetherbeei SAG_119_79)
ATGATTCTCAGGACAATGATTCTCGCGGCTACATTCGCGATCGGCGGTTG
CTCGACACTTACCGACTACGGCCCCGTCAGCAAGCGGTCCCTCACGGACG
GTCAGGGACACGTGATCGGCTACAAGCAGATGCTGAAGAACGACCGCACC
GGTGAAGTCGTCGCCCAGGTCTCGCTGTTCTCGCCGATCCTCGGCGGTTC
CGGCGATGTCATCGGCTACGAAGAACGCTCCCGGAGCGGTTCGATCATCC
GCGACCTGAACGGGCGCAAGATCGGCGGCCACTTCTCCGACTCCCGCAGC
AGGGGCTTTACGCTCGTGGTGCGCGCGCGGGGCTTCGACCAGGCGCTGGA
GCAGGAAAACGTCGCTTCCCTGCCGCGCGCCACGCCCGGCGTGACGCAGA
TCCTGGCGTCGCTGTCGGACCGGGACCTGAACCGCATCCGCTAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig5808:2710..3153-

>mRNA_P-wetherbeei_contig5808.2.1 ID=mRNA_P-wetherbeei_contig5808.2.1|Name=mRNA_P-wetherbeei_contig5808.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=444bp|location=Sequence derived from alignment at P-wetherbeei_contig5808:2710..3153- (Phaeothamnion wetherbeei SAG_119_79)
ATGATTCTCAGGACAATGATTCTCGCGGCTACATTCGCGATCGGCGGTTG
CTCGACACTTACCGACTACGGCCCCGTCAGCAAGCGGTCCCTCACGGACG
GTCAGGGACACGTGATCGGCTACAAGCAGATGCTGAAGAACGACCGCACC
GGTGAAGTCGTCGCCCAGGTCTCGCTGTTCTCGCCGATCCTCGGCGGTTC
CGGCGATGTCATCGGCTACGAAGAACGCTCCCGGAGCGGTTCGATCATCC
GCGACCTGAACGGGCGCAAGATCGGCGGCCACTTCTCCGACTCCCGCAGC
AGGGGCTTTACGCTCGTGGTGCGCGCGCGGGGCTTCGACCAGGCGCTGGA
GCAGGAAAACGTCGCTTCCCTGCCGCGCGCCACGCCCGGCGTGACGCAGA
TCCTGGCGTCGCTGTCGGACCGGGACCTGAACCGCATCCGCTAG
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