mRNA_P-wetherbeei_contig5806.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig5806.1.1
Unique NamemRNA_P-wetherbeei_contig5806.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig5806.1.1 vs. uniprot
Match: D7G918_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G918_ECTSI)

HSP 1 Score: 147 bits (372), Expect = 6.320e-34
Identity = 95/253 (37.55%), Postives = 124/253 (49.01%), Query Frame = 1 
Query:  757 LEAHPWPDRATRRYDTPIADYELPAQQAAQLRAYDLD---IIVASPFRRCLQTAGAVARALGRDEVVVDLAFGERMDKVRQDTAAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSECGFSYLTQDEMQVALGPGVRLARVVGTAPHLSEGAADGKRRYIAALRKLAAGELQRRSVLVVGHGDMLDAAAEAFCRSVVFEAAFCAWAV--IDPGHGAMVDGYGLQCLPL 1500
            L A PWPDRA R YD+PI D +LPA+QA  L    +    +I+ SPFRRCLQTAG VAR LG   V V L  GERMDKVR++ A  A                                                         FSYL + +M+ ALG GV+L  +VG  P   E   + K+R+I  +  +   +L+   VLVV HGD L AA E+    +VFEA +CAWA+  +D   G + + YG+Q +PL
Sbjct:  593 LAAVPWPDRALRPYDSPIVDTDLPARQAKALGRLGMGSQTVIICSPFRRCLQTAGVVARTLGVASVTVHLQVGERMDKVRKEIAELALDSEERSDGTLATKETVP--------------------------------------AFSYLAEADMRAALGAGVQLEGIVGEQPPEEESGIEAKQRFIVTIANVREEQLRDSPVLVVAHGDTLGAAGESLASQIVFEADYCAWALFNLDTHCGFVTESYGIQTIPL 807
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BLAST of mRNA_P-wetherbeei_contig5806.1.1 vs. uniprot
Match: A0A6H5KJH9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJH9_9PHAE)

HSP 1 Score: 132 bits (331), Expect = 1.030e-28
Identity = 87/224 (38.84%), Postives = 108/224 (48.21%), Query Frame = 1 
Query:  757 LEAHPWPDRATRRYDTPIADYELPAQQAAQLRAYDLD---IIVASPFRRCLQTAGAVARALGRDEVVVDLAFGERMDKVRQDTAAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSECGFSYLTQDEMQVALGPGVRLARVVGTAPHLSEGAADGKRRYIAALRKLAAGELQRRSVLVVGHGDMLDAAAEAFCRSVVFE 1419
            L A PWPDRA R YD PI D +LPA+QA  L    +    +IV SPFRRCLQTAG VAR LG   V V L  GERMDKVR++ A  A                                                         FSYL + +M+ ALG GV+L R++G  P   E   + K+R+IA + K+   +L+   VLVV HGD LDAA E+    +VFE
Sbjct:  590 LAAVPWPDRALRPYDPPIVDTDLPARQAKALGRLGMGSQTVIVCSPFRRCLQTAGVVARTLGVASVTVHLQVGERMDKVRKEIAELALDSEERSDGTLATKEAVP--------------------------------------AFSYLEEADMRAALGAGVQLERIIGEQPPEEESGIEAKQRFIATIAKVREEQLRDSPVLVVAHGDTLDAAGESLASQIVFE 775
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BLAST of mRNA_P-wetherbeei_contig5806.1.1 vs. uniprot
Match: A0A835YJL4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YJL4_9STRA)

HSP 1 Score: 69.3 bits (168), Expect = 1.180e-8
Identity = 67/227 (29.52%), Postives = 79/227 (34.80%), Query Frame = 1 
Query:  772 WPDRATRRYDTPIADYELPAQQAAQLR------------AYDLDI----------------------------IVASPFRRCLQTAGAVARALGRDEVVVDLAFGERMDKVRQDTAAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSECGFSYLTQDEMQVALGPGVRLARVVGTAPHLSEGAADGKRRYIAALRKLAAGE 1332
            W DRA R YDTPI D    A+ A  +             A D  +                            IV+SPFRRCLQTAG VAR  G   V V L  GERMDKVRQ+                                                              F+YLT +EM  ALG GV L  V+G  P L+E A   K RY   L ++  G+
Sbjct:  395 WTDRAARPYDTPIVDDGRAARAALAVLDSGALEGAWYSGASDATVWEMAAAGAPIGXXXXXXXXXXXXXXXLCIVSSPFRRCLQTAGHVARVFGCGVVHVHLGVGERMDKVRQECGPGTLLVDPAEEAQRPDASASDAPPPAASSLR--------------------------RVAFAYLTPEEMGDALGEGVALGTVLGERPPLTESAMQAKLRYSHVLARMCRGK 595
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig5806.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7G918_ECTSI6.320e-3437.55Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KJH9_9PHAE1.030e-2838.84Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835YJL4_9STRA1.180e-829.52Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig5806contigP-wetherbeei_contig5806:2..1668 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1667
Hectar predicted targeting categoryother localisation
Exons1
Ec32 ortholog descriptionHistidine phosphatase superfamily, clade-1
Ec32 orthologEc-15_002240.1
Cds size1467
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186860.5023217-UTR-P-wetherbeei_contig5806:1..551683186860.5023217-UTR-P-wetherbeei_contig5806:1..55Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig5806 2..55 +
1683186860.5188746-UTR-P-wetherbeei_contig5806:1522..16681683186860.5188746-UTR-P-wetherbeei_contig5806:1522..1668Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig5806 1523..1668 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186860.510884-CDS-P-wetherbeei_contig5806:55..15221683186860.510884-CDS-P-wetherbeei_contig5806:55..1522Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5806 56..1522 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig5806.1.1prot_P-wetherbeei_contig5806.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig5806 56..1522 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig5806.1.1

>prot_P-wetherbeei_contig5806.1.1 ID=prot_P-wetherbeei_contig5806.1.1|Name=mRNA_P-wetherbeei_contig5806.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=489bp
MSNPIQQPNDIEKLAADVHRIISEWVMRFVWGASTTNAAQGVVSNNIDVP
DNQDTGAPDGDDDANARSGVGVILLPAPEPATPAAEDPLEELDSSTPAEE
EQLTPKAAAASTAAATPASSAAAAALPYLLCVMRHSVRLDEVLEAEEANA
ASAPRTNDAFGAGGSSRSRYGKKSRTSGSARALKAGVGSPGSTCSTSSTG
SGGSGSFTGAYTAAAPASSSASADAPCCPAVAALLEAHPWPDRATRRYDT
PIADYELPAQQAAQLRAYDLDIIVASPFRRCLQTAGAVARALGRDEVVVD
LAFGERMDKVRQDTAAAATKAAANAAAADAAAGSDNTGGGSSNSRSGGAE
NGGSSSGSSNGKTTNGKDTDGSECGFSYLTQDEMQVALGPGVRLARVVGT
APHLSEGAADGKRRYIAALRKLAAGELQRRSVLVVGHGDMLDAAAEAFCR
SVVFEAAFCAWAVIDPGHGAMVDGYGLQCLPLDEEDDA*
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mRNA from alignment at P-wetherbeei_contig5806:2..1668+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig5806.1.1 ID=mRNA_P-wetherbeei_contig5806.1.1|Name=mRNA_P-wetherbeei_contig5806.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1667bp|location=Sequence derived from alignment at P-wetherbeei_contig5806:2..1668+ (Phaeothamnion wetherbeei SAG_119_79)
TTCCCTAAGCTACAGGAAAAGGAAACGACATCTTTCGCTGAGCAGCCGAT
TTCTATGAGTAATCCCATTCAGCAGCCAAACGACATCGAAAAACTAGCCG
CAGATGTCCACCGGATTATCTCCGAGTGGGTAATGCGGTTTGTTTGGGGC
GCGAGCACCACAAACGCAGCGCAAGGTGTTGTCTCAAATAACATAGACGT
CCCAGACAATCAAGACACTGGAGCGCCTGACGGCGACGACGACGCGAATG
CGAGGAGCGGCGTAGGCGTCATTCTGCTTCCGGCGCCGGAACCGGCGACT
CCGGCGGCGGAGGACCCTCTCGAAGAGTTGGACAGTTCAACGCCCGCCGA
GGAGGAGCAGCTCACACCAAAAGCCGCGGCGGCTTCGACTGCCGCTGCGA
CGCCTGCGTCTTCAGCGGCCGCCGCAGCGCTGCCCTACCTGCTTTGCGTC
ATGCGCCACTCTGTGCGCCTGGACGAGGTGCTCGAGGCGGAGGAGGCCAA
CGCCGCATCCGCCCCTCGAACAAACGACGCTTTTGGCGCCGGTGGCTCCT
CGAGGAGTCGCTACGGCAAAAAGTCGCGGACGTCGGGCAGCGCCAGGGCG
CTGAAGGCCGGTGTCGGCAGCCCCGGCAGCACCTGCAGCACTAGCAGCAC
CGGCAGTGGCGGCAGCGGCAGCTTCACCGGCGCCTACACGGCGGCGGCTC
CTGCATCATCTTCAGCATCCGCCGATGCCCCCTGCTGCCCGGCAGTGGCG
GCGCTCCTGGAGGCGCACCCGTGGCCCGACCGTGCGACACGGCGCTACGA
CACGCCAATCGCCGACTACGAGCTGCCGGCGCAGCAGGCGGCGCAGCTCC
GCGCCTACGACCTCGACATCATCGTCGCGTCGCCGTTCCGCCGCTGCCTG
CAGACGGCGGGCGCCGTGGCGCGGGCACTTGGCCGCGACGAGGTGGTGGT
CGACCTTGCCTTTGGCGAGCGGATGGACAAGGTGCGGCAGGATACGGCCG
CCGCCGCCACCAAGGCCGCGGCGAACGCGGCCGCGGCGGACGCGGCAGCG
GGCAGCGACAACACCGGCGGCGGCAGCAGCAACAGCAGGAGCGGCGGCGC
GGAGAATGGAGGCAGCAGCAGCGGCAGCAGCAATGGCAAAACCACCAACG
GCAAGGACACCGATGGCAGCGAGTGTGGGTTCAGCTACCTGACCCAGGAC
GAGATGCAGGTGGCGCTGGGCCCCGGCGTGCGCCTCGCCCGCGTCGTCGG
CACAGCGCCGCACCTCTCCGAGGGCGCCGCCGACGGCAAGCGCCGCTACA
TCGCGGCACTGCGCAAGTTGGCCGCCGGGGAGCTCCAGCGGCGCAGCGTG
CTGGTGGTGGGGCACGGCGACATGCTGGACGCTGCCGCCGAGGCGTTCTG
CCGCTCCGTGGTATTTGAGGCAGCGTTCTGCGCGTGGGCAGTGATCGACC
CAGGCCACGGCGCCATGGTGGACGGCTACGGACTGCAGTGCCTGCCACTG
GATGAGGAGGACGACGCATGAAGATTGTTTCGGGGCAGCTGCTGTATGGA
TGGGTGGGCTGTGGGAGTGGTCGATTTGATTGCTGGATAGAGGTGCAACC
TCTTTTATCTTTTTACAAACGAAGTGTGCATCACTGCATTACCATAAATG
AGCTATCCCTTTTCTTG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig5806:2..1668+

>mRNA_P-wetherbeei_contig5806.1.1 ID=mRNA_P-wetherbeei_contig5806.1.1|Name=mRNA_P-wetherbeei_contig5806.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1467bp|location=Sequence derived from alignment at P-wetherbeei_contig5806:2..1668+ (Phaeothamnion wetherbeei SAG_119_79)
ATGAGTAATCCCATTCAGCAGCCAAACGACATCGAAAAACTAGCCGCAGA
TGTCCACCGGATTATCTCCGAGTGGGTAATGCGGTTTGTTTGGGGCGCGA
GCACCACAAACGCAGCGCAAGGTGTTGTCTCAAATAACATAGACGTCCCA
GACAATCAAGACACTGGAGCGCCTGACGGCGACGACGACGCGAATGCGAG
GAGCGGCGTAGGCGTCATTCTGCTTCCGGCGCCGGAACCGGCGACTCCGG
CGGCGGAGGACCCTCTCGAAGAGTTGGACAGTTCAACGCCCGCCGAGGAG
GAGCAGCTCACACCAAAAGCCGCGGCGGCTTCGACTGCCGCTGCGACGCC
TGCGTCTTCAGCGGCCGCCGCAGCGCTGCCCTACCTGCTTTGCGTCATGC
GCCACTCTGTGCGCCTGGACGAGGTGCTCGAGGCGGAGGAGGCCAACGCC
GCATCCGCCCCTCGAACAAACGACGCTTTTGGCGCCGGTGGCTCCTCGAG
GAGTCGCTACGGCAAAAAGTCGCGGACGTCGGGCAGCGCCAGGGCGCTGA
AGGCCGGTGTCGGCAGCCCCGGCAGCACCTGCAGCACTAGCAGCACCGGC
AGTGGCGGCAGCGGCAGCTTCACCGGCGCCTACACGGCGGCGGCTCCTGC
ATCATCTTCAGCATCCGCCGATGCCCCCTGCTGCCCGGCAGTGGCGGCGC
TCCTGGAGGCGCACCCGTGGCCCGACCGTGCGACACGGCGCTACGACACG
CCAATCGCCGACTACGAGCTGCCGGCGCAGCAGGCGGCGCAGCTCCGCGC
CTACGACCTCGACATCATCGTCGCGTCGCCGTTCCGCCGCTGCCTGCAGA
CGGCGGGCGCCGTGGCGCGGGCACTTGGCCGCGACGAGGTGGTGGTCGAC
CTTGCCTTTGGCGAGCGGATGGACAAGGTGCGGCAGGATACGGCCGCCGC
CGCCACCAAGGCCGCGGCGAACGCGGCCGCGGCGGACGCGGCAGCGGGCA
GCGACAACACCGGCGGCGGCAGCAGCAACAGCAGGAGCGGCGGCGCGGAG
AATGGAGGCAGCAGCAGCGGCAGCAGCAATGGCAAAACCACCAACGGCAA
GGACACCGATGGCAGCGAGTGTGGGTTCAGCTACCTGACCCAGGACGAGA
TGCAGGTGGCGCTGGGCCCCGGCGTGCGCCTCGCCCGCGTCGTCGGCACA
GCGCCGCACCTCTCCGAGGGCGCCGCCGACGGCAAGCGCCGCTACATCGC
GGCACTGCGCAAGTTGGCCGCCGGGGAGCTCCAGCGGCGCAGCGTGCTGG
TGGTGGGGCACGGCGACATGCTGGACGCTGCCGCCGAGGCGTTCTGCCGC
TCCGTGGTATTTGAGGCAGCGTTCTGCGCGTGGGCAGTGATCGACCCAGG
CCACGGCGCCATGGTGGACGGCTACGGACTGCAGTGCCTGCCACTGGATG
AGGAGGACGACGCATGA
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