mRNA_P-wetherbeei_contig58055.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig58055.1.1
Unique NamemRNA_P-wetherbeei_contig58055.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig58055.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig58055contigP-wetherbeei_contig58055:106..426 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog1038859.AXAU01000004_gene4619
PFAMsDUF3551
Model size321
Max annot lvl28211|Alphaproteobacteria
Hectar predicted targeting categorysignal peptide
Exons1
Evalue0.000192
EggNOG OGs2AITW@1|root,319AY@2|Bacteria,1N4RI@1224|Proteobacteria,2UG88@28211|Alphaproteobacteria,3K111@41294|Bradyrhizobiaceae
DescriptionProtein of unknown function (DUF3551)
Cds size321
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186860.4474413-CDS-P-wetherbeei_contig58055:105..4261683186860.4474413-CDS-P-wetherbeei_contig58055:105..426Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig58055 106..426 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig58055.1.1prot_P-wetherbeei_contig58055.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig58055 106..426 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig58055.1.1

>prot_P-wetherbeei_contig58055.1.1 ID=prot_P-wetherbeei_contig58055.1.1|Name=mRNA_P-wetherbeei_contig58055.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=107bp
MRKSIIALGLLGVVLTLASVSAQAAPRGPAQFFDDRGGFRGYAWCLQQGL
EVFDCNYFNRGQCQVSASTRGVWCVQNPFAVEQAQRAEQAAAAGLVKRKK
VRQQVY*
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mRNA from alignment at P-wetherbeei_contig58055:106..426-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig58055.1.1 ID=mRNA_P-wetherbeei_contig58055.1.1|Name=mRNA_P-wetherbeei_contig58055.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=321bp|location=Sequence derived from alignment at P-wetherbeei_contig58055:106..426- (Phaeothamnion wetherbeei SAG_119_79)
ATGCGTAAGTCAATCATCGCCCTCGGCCTGCTGGGAGTCGTCCTCACCCT
GGCAAGCGTGTCCGCGCAGGCCGCGCCGCGCGGTCCGGCGCAGTTTTTCG
ACGACCGCGGCGGCTTCCGTGGCTATGCGTGGTGTCTGCAGCAGGGCCTC
GAGGTCTTCGACTGCAACTACTTCAATCGTGGGCAATGCCAGGTGTCGGC
GTCGACCCGGGGCGTCTGGTGCGTCCAGAATCCCTTCGCCGTCGAACAGG
CGCAGCGAGCCGAACAGGCCGCGGCCGCCGGACTCGTGAAGCGGAAGAAA
GTACGGCAGCAGGTTTACTAA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig58055:106..426-

>mRNA_P-wetherbeei_contig58055.1.1 ID=mRNA_P-wetherbeei_contig58055.1.1|Name=mRNA_P-wetherbeei_contig58055.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=321bp|location=Sequence derived from alignment at P-wetherbeei_contig58055:106..426- (Phaeothamnion wetherbeei SAG_119_79)
ATGCGTAAGTCAATCATCGCCCTCGGCCTGCTGGGAGTCGTCCTCACCCT
GGCAAGCGTGTCCGCGCAGGCCGCGCCGCGCGGTCCGGCGCAGTTTTTCG
ACGACCGCGGCGGCTTCCGTGGCTATGCGTGGTGTCTGCAGCAGGGCCTC
GAGGTCTTCGACTGCAACTACTTCAATCGTGGGCAATGCCAGGTGTCGGC
GTCGACCCGGGGCGTCTGGTGCGTCCAGAATCCCTTCGCCGTCGAACAGG
CGCAGCGAGCCGAACAGGCCGCGGCCGCCGGACTCGTGAAGCGGAAGAAA
GTACGGCAGCAGGTTTACTAA
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