mRNA_P-wetherbeei_contig58029.3.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig58029.3.1
Unique NamemRNA_P-wetherbeei_contig58029.3.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig58029.3.1 vs. uniprot
Match: I3D5P0_9ARCH (Uncharacterized protein n=1 Tax=Candidatus Nitrosopumilus salaria BD31 TaxID=859350 RepID=I3D5P0_9ARCH)

HSP 1 Score: 216 bits (551), Expect = 3.220e-70
Identity = 104/115 (90.43%), Postives = 106/115 (92.17%), Query Frame = 1
Query:    1 GAKLPRRYELLGGISLLSPAYLLSVERWPFHSEPPDHYDLLSHLLDLSVSQSSILMPLHYQYDVRPYLGYLRTPPLLFGRRPPQSNCLPYTVPDPDKGPRLEPQHYQAGISTSPP 345
            GAKLPRRYELLGGISLLSP YLLSVERWPFH+EPPDHYDLLSHLLDLSVSQSS LMPLHYQYD RPYLGYLRTPPLLFGRRPPQSNC PYTVPDPD GPRLEPQ +Q GIS S P
Sbjct:   65 GAKLPRRYELLGGISLLSPEYLLSVERWPFHTEPPDHYDLLSHLLDLSVSQSSNLMPLHYQYDFRPYLGYLRTPPLLFGRRPPQSNCPPYTVPDPDYGPRLEPQQHQGGISRSTP 179          
BLAST of mRNA_P-wetherbeei_contig58029.3.1 vs. uniprot
Match: A0A388PTV7_9PROT (Uncharacterized protein n=1 Tax=Methylophilaceae bacterium TaxID=2030816 RepID=A0A388PTV7_9PROT)

HSP 1 Score: 207 bits (526), Expect = 6.160e-67
Identity = 99/111 (89.19%), Postives = 102/111 (91.89%), Query Frame = 1
Query:    1 GAKLPRRYELLGGISLLSPAYLLSVERWPFHSEPPDHYDLLSHLLDLSVSQSSILMPLHYQYDVRPYLGYLRTPPLLFGRRPPQSNCLPYTVPDPDKGPRLEPQHYQAGIS 333
            GAKLPRRYELLGGISLLSP YLLSVERWPFH+EPPDHYDLLSHLLDLSVSQSS LMPLHYQYD RPYLGYLRTPPLLFGRRPPQSNC PYTVP+P  G RLEPQ +Q GIS
Sbjct:    6 GAKLPRRYELLGGISLLSPEYLLSVERWPFHTEPPDHYDLLSHLLDLSVSQSSNLMPLHYQYDFRPYLGYLRTPPLLFGRRPPQSNCPPYTVPNPVSGSRLEPQQHQGGIS 116          
BLAST of mRNA_P-wetherbeei_contig58029.3.1 vs. uniprot
Match: A0A8H2LVE7_BURPE (Cell wall-associated hydrolase n=3 Tax=Proteobacteria TaxID=1224 RepID=A0A8H2LVE7_BURPE)

HSP 1 Score: 199 bits (506), Expect = 1.310e-62
Identity = 99/116 (85.34%), Postives = 102/116 (87.93%), Query Frame = 1
Query:    1 GAKLPRRYELLGGISLLSPAYLLSVERWPFHSEPPDHYDLLSHLLDLSVSQSSILMPLHYQYDVRPYLGYLRTPPLLFGRRPPQSNCLPYTVPDPDKGPRLEPQHYQAGIS-TSPP 345
            GAK  RRYELLGGISLLSP YLLSVERWPFH+EPPDHYDLLSHLLDLSVSQ S LMPLHYQ+D RPYL YLRTPPL FGRRPPQSNCLP TVPDPD GPRLEPQ  Q GIS T+PP
Sbjct:   86 GAKHRRRYELLGGISLLSPEYLLSVERWPFHTEPPDHYDLLSHLLDLSVSQLSTLMPLHYQHDFRPYLAYLRTPPLRFGRRPPQSNCLPCTVPDPDHGPRLEPQTNQGGISRTAPP 201          
BLAST of mRNA_P-wetherbeei_contig58029.3.1 vs. uniprot
Match: A0A6B2E5S5_9DIPT (Putative cell wall-associated hydrolase (Fragment) n=1 Tax=Phlebotomus kandelakii TaxID=1109342 RepID=A0A6B2E5S5_9DIPT)

HSP 1 Score: 188 bits (478), Expect = 3.680e-59
Identity = 94/111 (84.68%), Postives = 95/111 (85.59%), Query Frame = 1
Query:    1 GAKLPRRYELLGGISLLSPAYLLSVERWPFHSEPPDHYDLLSHLLDLSVSQSSILMPLHYQYDVRPYLGYLRTPPLLFGRRPPQSNCLPYTVPDPDKGPRLEPQHYQAGIS 333
            GAK  RR ELLGGISLLSP YLLSVERWPFH+EPPDHY LLSHLLDLSVSQSS LMPLHYQYDVRPYL YLR PPLLF RRPPQSNC P TVPDPD G RLEPQ  Q GIS
Sbjct:   61 GAKHRRRCELLGGISLLSPEYLLSVERWPFHTEPPDHYVLLSHLLDLSVSQSSTLMPLHYQYDVRPYLAYLRAPPLLFRRRPPQSNCPPCTVPDPDNGSRLEPQTDQGGIS 171          
BLAST of mRNA_P-wetherbeei_contig58029.3.1 vs. uniprot
Match: A0A510LIN6_NEIGO (Cell wall-associated hydrolase n=3 Tax=Neisseria TaxID=482 RepID=A0A510LIN6_NEIGO)

HSP 1 Score: 184 bits (466), Expect = 8.890e-57
Identity = 92/115 (80.00%), Postives = 96/115 (83.48%), Query Frame = 1
Query:    1 GAKLPRRYELLGGISLLSPAYLLSVERWPFHSEPPDHYDLLSHLLDLSVSQSSILMPLHYQYDVRPYLGYLRTPPLLFGRRPPQSNCLPYTVPDPDKGPRLEPQHYQAGISTSPP 345
            GAKL RRYELLGGISLLSP YLLSVERWPFH+EPPDHY LLSHL DLSVSQ S L+PLHYQ D RP LG LRTPPL FGRRPPQSNCLP TVPDPD G  LEPQ +Q GIS + P
Sbjct:   86 GAKLRRRYELLGGISLLSPEYLLSVERWPFHTEPPDHYVLLSHLPDLSVSQLSYLLPLHYQSDFRPDLGNLRTPPLRFGRRPPQSNCLPCTVPDPDDGSGLEPQRHQGGISRTTP 200          
BLAST of mRNA_P-wetherbeei_contig58029.3.1 vs. uniprot
Match: A0A0J7YMY6_BETVV (Uncharacterized protein (Fragment) n=1 Tax=Beta vulgaris subsp. vulgaris TaxID=3555 RepID=A0A0J7YMY6_BETVV)

HSP 1 Score: 179 bits (454), Expect = 2.120e-55
Identity = 87/96 (90.62%), Postives = 89/96 (92.71%), Query Frame = 1
Query:    1 GAKLPRRYELLGGISLLSPAYLLSVERWPFHSEPPDHYDLLSHLLDLSVSQSSILMPLHYQYDVRPYLGYLRTPPLLFGRRPPQSNCLPYTVPDPD 288
            GAKL RRYELLGGISLLSP YLLSVERWPFHSEPPDHY LLSHLLDLSVSQSS+L+PLHYQYDVRPYLG LRTPPL FGRRPPQSNC PYTVPD D
Sbjct:   77 GAKLRRRYELLGGISLLSPEYLLSVERWPFHSEPPDHYVLLSHLLDLSVSQSSLLLPLHYQYDVRPYLGDLRTPPLPFGRRPPQSNCPPYTVPDLD 172          
BLAST of mRNA_P-wetherbeei_contig58029.3.1 vs. uniprot
Match: A0A645H9E7_9ZZZZ (Uncharacterized protein n=1 Tax=bioreactor metagenome TaxID=1076179 RepID=A0A645H9E7_9ZZZZ)

HSP 1 Score: 176 bits (445), Expect = 1.540e-54
Identity = 85/96 (88.54%), Postives = 88/96 (91.67%), Query Frame = 1
Query:    1 GAKLPRRYELLGGISLLSPAYLLSVERWPFHSEPPDHYDLLSHLLDLSVSQSSILMPLHYQYDVRPYLGYLRTPPLLFGRRPPQSNCLPYTVPDPD 288
            GAK  RRYELLGGISLLSP YLLSVERWPFH+EPPDHY LLSHLLDLSVSQSS+L+PLHYQYDVRPYLG LRTPPL FGRRPPQSNC P TVPDPD
Sbjct:    6 GAKHRRRYELLGGISLLSPEYLLSVERWPFHTEPPDHYVLLSHLLDLSVSQSSLLLPLHYQYDVRPYLGDLRTPPLPFGRRPPQSNCPPCTVPDPD 101          
BLAST of mRNA_P-wetherbeei_contig58029.3.1 vs. uniprot
Match: A0A0H5PZI5_9ZZZZ (Uncharacterized protein n=1 Tax=uncultured prokaryote TaxID=198431 RepID=A0A0H5PZI5_9ZZZZ)

HSP 1 Score: 172 bits (435), Expect = 6.590e-53
Identity = 88/115 (76.52%), Postives = 93/115 (80.87%), Query Frame = 1
Query:    1 GAKLPRRYELLGGISLLSPAYLLSVERWPFHSEPPDHYDLLSHLLDLSVSQSSILMPLHYQYDVRPYLGYLRTPPLLFGRRPPQSNCLPYTVPDPDKGPRLEPQHYQAGISTSPP 345
            GAK  RRYELLGGISLLSP YLLSVERWPFHS PPDHYDLLSHLL+L +SQSS L+PLHYQ+D RPYL YLRTPPL F RRPPQSNCLP TVP+      LEPQ  Q GIS S P
Sbjct:    6 GAKHRRRYELLGGISLLSPEYLLSVERWPFHSVPPDHYDLLSHLLELWLSQSSTLLPLHYQHDFRPYLAYLRTPPLPFRRRPPQSNCLPCTVPNSVHLSWLEPQTNQGGISRSTP 120          
BLAST of mRNA_P-wetherbeei_contig58029.3.1 vs. uniprot
Match: L9U5D6_9GAMM (Uncharacterized protein n=1 Tax=Halomonas titanicae BH1 TaxID=1204738 RepID=L9U5D6_9GAMM)

HSP 1 Score: 162 bits (409), Expect = 7.580e-49
Identity = 81/111 (72.97%), Postives = 85/111 (76.58%), Query Frame = 2
Query:    2 VPNSPVDMNSWEESACYPQRTFYPLSDGPSIQNHRITMTCFRTCSTCQSRSQASLCHCTISTMSDRT*DTFALLRYSLGGDRPSQTACHTRSPIPIRDPG*NRNTIRLVFQ 334
            +PN+ VD+NSW  SACYP+ TFYPLSDGPSIQNHRIT TCFRTCSTC SRSQA LC CT  TMSDR   TF LLRYSLGGDRPSQT  HT S I I D   N N  RLVFQ
Sbjct:    1 MPNTAVDVNSWAVSACYPRSTFYPLSDGPSIQNHRITRTCFRTCSTCLSRSQAPLCSCTQCTMSDRAEGTFVLLRYSLGGDRPSQTTHHTLSSIRITDLSENANDARLVFQ 111          
BLAST of mRNA_P-wetherbeei_contig58029.3.1 vs. uniprot
Match: A0A0V0HP68_SOLCH (Putative ovule protein n=1 Tax=Solanum chacoense TaxID=4108 RepID=A0A0V0HP68_SOLCH)

HSP 1 Score: 161 bits (407), Expect = 5.020e-48
Identity = 82/110 (74.55%), Postives = 85/110 (77.27%), Query Frame = 2
Query:   14 PVDMNSWEESACYPQRTFYPLSDGPSIQNHRITMTCFRTCSTCQSRSQASLCHCTISTMSDRT*DTFALLRYSLGGDRPSQTACHTRSPIPIRDPG*NRNTIRLVFQRRL 343
            PVDM     SACYPQRTFYPLSDGPSIQNHRITM+CFR CSTCQSRS A LCHCTI TMSDR   TF LLRY+LGGDRPSQTA H  SPI I D G N    R+VFQR L
Sbjct:   90 PVDMKLLGVSACYPQRTFYPLSDGPSIQNHRITMSCFRICSTCQSRSXARLCHCTIVTMSDRNXRTFELLRYALGGDRPSQTAYHALSPIQIMDLGXNLKHTRVVFQRWL 199          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig58029.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
I3D5P0_9ARCH3.220e-7090.43Uncharacterized protein n=1 Tax=Candidatus Nitroso... [more]
A0A388PTV7_9PROT6.160e-6789.19Uncharacterized protein n=1 Tax=Methylophilaceae b... [more]
A0A8H2LVE7_BURPE1.310e-6285.34Cell wall-associated hydrolase n=3 Tax=Proteobacte... [more]
A0A6B2E5S5_9DIPT3.680e-5984.68Putative cell wall-associated hydrolase (Fragment)... [more]
A0A510LIN6_NEIGO8.890e-5780.00Cell wall-associated hydrolase n=3 Tax=Neisseria T... [more]
A0A0J7YMY6_BETVV2.120e-5590.63Uncharacterized protein (Fragment) n=1 Tax=Beta vu... [more]
A0A645H9E7_9ZZZZ1.540e-5488.54Uncharacterized protein n=1 Tax=bioreactor metagen... [more]
A0A0H5PZI5_9ZZZZ6.590e-5376.52Uncharacterized protein n=1 Tax=uncultured prokary... [more]
L9U5D6_9GAMM7.580e-4972.97Uncharacterized protein n=1 Tax=Halomonas titanica... [more]
A0A0V0HP68_SOLCH5.020e-4874.55Putative ovule protein n=1 Tax=Solanum chacoense T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig58029contigP-wetherbeei_contig58029:162..506 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog6669.EFX63806
Model size345
Max annot lvl33208|Metazoa
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.27e-33
EggNOG OGs2EAXE@1|root,2SH3N@2759|Eukaryota,3ATGQ@33154|Opisthokonta,3C4FT@33208|Metazoa,3DJWQ@33213|Bilateria
Cds size345
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186860.203062-CDS-P-wetherbeei_contig58029:161..5061683186860.203062-CDS-P-wetherbeei_contig58029:161..506Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig58029 162..506 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig58029.3.1prot_P-wetherbeei_contig58029.3.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig58029 162..506 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig58029.3.1

>prot_P-wetherbeei_contig58029.3.1 ID=prot_P-wetherbeei_contig58029.3.1|Name=mRNA_P-wetherbeei_contig58029.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=115bp
GAKLPRRYELLGGISLLSPAYLLSVERWPFHSEPPDHYDLLSHLLDLSVS
QSSILMPLHYQYDVRPYLGYLRTPPLLFGRRPPQSNCLPYTVPDPDKGPR
LEPQHYQAGISTSPP
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mRNA from alignment at P-wetherbeei_contig58029:162..506-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig58029.3.1 ID=mRNA_P-wetherbeei_contig58029.3.1|Name=mRNA_P-wetherbeei_contig58029.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=345bp|location=Sequence derived from alignment at P-wetherbeei_contig58029:162..506- (Phaeothamnion wetherbeei SAG_119_79)
GGTGCCAAACTCCCCCGTCGATATGAACTCTTGGGAGGAATCAGCCTGTT ATCCCCAGCGTACCTTTTATCCGTTGAGCGATGGCCCTTCCATTCAGAAC CACCGGATCACTATGACCTGCTTTCGCACCTGCTCGACTTGTCAGTCTCG CAGTCAAGCATCCTTATGCCATTGCACTATCAGTACGATGTCCGACCGTA CCTAGGATACCTTCGCACTCCTCCGTTACTCTTTGGGAGGAGACCGCCCC AGTCAAACTGCCTGCCATACACGGTCCCCGATCCCGATAAGGGACCCAGG TTAGAACCGCAACACTATCAGGCTGGTATTTCAACGTCGCCTCCA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig58029:162..506-

>mRNA_P-wetherbeei_contig58029.3.1 ID=mRNA_P-wetherbeei_contig58029.3.1|Name=mRNA_P-wetherbeei_contig58029.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=345bp|location=Sequence derived from alignment at P-wetherbeei_contig58029:162..506- (Phaeothamnion wetherbeei SAG_119_79)
GGTGCCAAACTCCCCCGTCGATATGAACTCTTGGGAGGAATCAGCCTGTT
ATCCCCAGCGTACCTTTTATCCGTTGAGCGATGGCCCTTCCATTCAGAAC
CACCGGATCACTATGACCTGCTTTCGCACCTGCTCGACTTGTCAGTCTCG
CAGTCAAGCATCCTTATGCCATTGCACTATCAGTACGATGTCCGACCGTA
CCTAGGATACCTTCGCACTCCTCCGTTACTCTTTGGGAGGAGACCGCCCC
AGTCAAACTGCCTGCCATACACGGTCCCCGATCCCGATAAGGGACCCAGG
TTAGAACCGCAACACTATCAGGCTGGTATTTCAACGTCGCCTCCA
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